Wall clock time and date at job start Tue Mar 31 2020 07:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39831 * 125.39933 * 2 1 4 4 C 1.30238 * 110.09580 * 179.97438 * 3 2 1 5 5 C 1.45867 * 107.68725 * 359.97438 * 4 3 2 6 6 C 1.40012 * 134.15452 * 180.33317 * 5 4 3 7 7 C 1.38597 * 117.99769 * 180.16625 * 6 5 4 8 8 N 1.40015 * 120.32757 * 179.73983 * 7 6 5 9 9 C 1.39695 * 120.00111 * 149.38533 * 8 7 6 10 10 C 1.39358 * 119.95188 * 327.05391 * 9 8 7 11 11 C 1.38472 * 120.42230 * 180.27369 * 10 9 8 12 12 C 1.37692 * 120.32704 * 0.02562 * 11 10 9 13 13 C 1.40761 * 119.89685 * 359.97438 * 12 11 10 14 14 C 1.41405 * 120.20382 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99512 * 206.99167 * 14 13 12 16 16 C 1.39920 * 120.00537 * 26.99183 * 14 13 12 17 17 N 1.30834 * 120.00154 * 15.48026 * 16 14 13 18 18 Si 1.86801 * 120.00223 * 195.47943 * 16 14 13 19 19 H 1.48498 * 109.46852 * 60.00428 * 18 16 14 20 20 H 1.48502 * 109.46899 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47320 * 299.99867 * 18 16 14 22 22 C 1.38299 * 119.95369 * 147.32964 * 9 8 7 23 23 C 1.39454 * 119.34417 * 359.46853 * 7 6 5 24 24 N 1.31439 * 121.47673 * 0.27206 * 23 7 6 25 25 C 1.32732 * 121.73579 * 0.02562 * 24 23 7 26 26 H 1.08996 * 109.46985 * 270.00103 * 1 2 3 27 27 H 1.09000 * 109.46867 * 30.00478 * 1 2 3 28 28 H 1.08999 * 109.46478 * 150.00466 * 1 2 3 29 29 H 1.08004 * 126.15766 * 180.02562 * 4 3 2 30 30 H 1.07996 * 121.00499 * 359.92878 * 6 5 4 31 31 H 0.97004 * 119.99843 * 329.38544 * 8 7 6 32 32 H 1.08006 * 119.78927 * 0.27530 * 10 9 8 33 33 H 1.08001 * 119.83868 * 180.02562 * 11 10 9 34 34 H 1.07999 * 120.05103 * 179.97438 * 12 11 10 35 35 H 0.97002 * 120.00651 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.16478 * 359.70565 * 22 9 8 37 37 H 1.08001 * 119.26009 * 180.29684 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2750 1.1398 0.0000 4 6 3.5312 0.7961 0.0005 5 6 3.5919 -0.6613 0.0016 6 6 4.6361 -1.5940 0.0083 7 6 4.3061 -2.9401 0.0034 8 7 5.3116 -3.9145 0.0042 9 6 5.0865 -5.1500 0.6161 10 6 4.2705 -5.2300 1.7430 11 6 4.0453 -6.4487 2.3605 12 6 4.6261 -7.5957 1.8676 13 6 5.4527 -7.5306 0.7302 14 6 6.0520 -8.7046 0.2182 15 1 6.9794 -8.6417 -0.3319 16 6 5.4438 -9.9477 0.4241 17 7 4.1958 -10.0092 0.8123 18 14 6.4134 -11.5198 0.1450 19 1 7.5908 -11.5423 1.0496 20 1 5.5480 -12.6924 0.4304 21 1 6.8722 -11.5744 -1.2663 22 6 5.6783 -6.2912 0.1060 23 6 2.9628 -3.3145 0.0033 24 7 2.0007 -2.4189 0.0024 25 6 2.2589 -1.1170 0.0012 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3632 -0.8901 -0.5138 29 1 4.3760 1.4690 0.0011 30 1 5.6676 -1.2742 0.0133 31 1 6.1646 -3.7316 -0.4200 32 1 3.8109 -4.3356 2.1372 33 1 3.4109 -6.4999 3.2331 34 1 4.4477 -8.5439 2.3531 35 1 3.7739 -10.8710 0.9547 36 1 6.3106 -6.2306 -0.7674 37 1 2.7072 -4.3639 0.0043 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249666513.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:22 Heat of formation + Delta-G solvation = 113.640061 kcal Electronic energy + Delta-G solvation = -21757.539069 eV Core-core repulsion = 18500.342098 eV Total energy + Delta-G solvation = -3257.196971 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 294.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.48866 -40.28162 -38.86616 -36.64340 -35.14133 -34.43526 -32.24824 -31.77629 -30.77764 -28.94296 -27.35221 -27.12862 -25.09461 -23.63912 -22.63973 -22.16434 -21.71036 -19.42944 -18.85809 -17.99912 -17.71708 -17.13583 -16.81169 -16.46170 -16.38715 -15.98762 -15.12465 -14.91514 -14.68511 -14.56125 -14.34901 -14.10308 -13.86944 -13.52464 -13.39001 -13.35452 -13.04369 -12.86780 -12.69278 -12.18382 -12.10033 -12.00437 -11.68719 -11.31881 -11.03522 -10.76836 -10.51521 -9.97246 -9.37737 -9.26515 -8.60618 -7.94950 -6.33946 -0.26899 0.27254 1.00807 1.22310 1.23952 1.41365 1.49089 1.52172 1.57375 2.23049 2.46873 2.71101 2.83172 3.27612 3.39759 3.68961 3.77302 3.87309 4.03842 4.37841 4.40521 4.45294 4.51972 4.62260 4.63960 4.65849 4.95804 5.08760 5.11188 5.13987 5.27785 5.36978 5.47813 5.55122 5.79731 5.91135 5.98042 6.14768 6.22988 6.45257 6.55633 6.78171 6.82084 6.97103 6.98029 7.11912 8.37662 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.036949 B = 0.003034 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.614498 B = 9227.515638 C = 9582.476210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.411 5.411 3 N -0.258 5.258 4 C 0.093 3.907 5 C -0.203 4.203 6 C -0.048 4.048 7 C 0.103 3.897 8 N -0.675 5.675 9 C 0.200 3.800 10 C -0.267 4.267 11 C -0.084 4.084 12 C -0.205 4.205 13 C 0.105 3.895 14 C -0.499 4.499 15 H 0.078 0.922 16 C 0.036 3.964 17 N -0.826 5.826 18 Si 0.980 3.020 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.260 1.260 22 C -0.267 4.267 23 C 0.132 3.868 24 N -0.500 5.500 25 C 0.252 3.748 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.245 0.755 30 H 0.177 0.823 31 H 0.416 0.584 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.287 0.713 36 H 0.103 0.897 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.574 15.952 -1.863 16.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.205 5.205 3 N -0.070 5.070 4 C -0.106 4.106 5 C -0.214 4.214 6 C -0.080 4.080 7 C 0.001 3.999 8 N -0.301 5.301 9 C 0.104 3.896 10 C -0.289 4.289 11 C -0.103 4.103 12 C -0.225 4.225 13 C 0.102 3.898 14 C -0.529 4.529 15 H 0.096 0.904 16 C -0.179 4.179 17 N -0.452 5.452 18 Si 0.801 3.199 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.184 1.184 22 C -0.290 4.290 23 C -0.039 4.039 24 N -0.214 5.214 25 C 0.014 3.986 26 H 0.093 0.907 27 H 0.122 0.878 28 H 0.103 0.897 29 H 0.261 0.739 30 H 0.194 0.806 31 H 0.254 0.746 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.817 16.525 -1.768 16.857 hybrid contribution 1.543 -1.538 -0.165 2.185 sum -1.274 14.987 -1.933 15.165 Atomic orbital electron populations 1.21922 0.72465 1.04950 1.03726 1.48258 1.06861 0.99566 1.65812 1.76592 1.03484 1.07976 1.18973 1.25678 0.95318 0.91957 0.97620 1.20582 0.93054 0.95717 1.12035 1.20875 1.00322 0.88538 0.98302 1.18450 0.89442 0.89598 1.02414 1.41728 1.15624 1.11277 1.61455 1.17329 0.96778 0.84201 0.91292 1.20264 1.11363 0.96879 1.00421 1.20725 0.98324 0.92622 0.98634 1.21201 1.05146 0.97096 0.99080 1.17720 0.89831 0.92437 0.89791 1.19799 1.08487 0.91762 1.32823 0.90429 1.26722 0.95110 1.04044 0.92033 1.69882 1.11924 1.28833 1.34580 0.85276 0.78848 0.75850 0.79883 1.18461 1.19484 1.18413 1.20824 1.12769 0.91887 1.03514 1.22587 0.87640 0.98101 0.95560 1.66574 1.37386 0.99525 1.17935 1.19263 0.90166 0.88050 1.01138 0.90720 0.87768 0.89659 0.73932 0.80603 0.74596 0.88235 0.87467 0.88406 0.90255 0.87885 0.83204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.13 11.44 127.77 1.46 3.60 16 2 N -0.41 -10.95 4.05 -366.44 -1.48 -12.43 16 3 N -0.26 -6.16 12.40 -53.14 -0.66 -6.82 16 4 C 0.09 1.79 12.29 86.90 1.07 2.86 16 5 C -0.20 -5.17 6.37 -20.23 -0.13 -5.30 16 6 C -0.05 -1.13 10.15 22.79 0.23 -0.90 16 7 C 0.10 3.12 5.90 38.21 0.23 3.35 16 8 N -0.67 -21.37 5.46 -180.29 -0.98 -22.36 16 9 C 0.20 8.17 5.82 38.17 0.22 8.39 16 10 C -0.27 -11.36 8.04 22.60 0.18 -11.18 16 11 C -0.08 -3.87 10.01 22.20 0.22 -3.65 16 12 C -0.21 -10.64 8.67 22.76 0.20 -10.44 16 13 C 0.11 5.52 5.55 -21.31 -0.12 5.40 16 14 C -0.50 -26.29 9.05 23.46 0.21 -26.08 16 15 H 0.08 3.90 7.89 -2.91 -0.02 3.88 16 16 C 0.04 1.78 5.17 85.25 0.44 2.22 16 17 N -0.83 -43.02 10.98 21.82 0.24 -42.78 16 18 Si 0.98 37.69 29.59 68.60 2.03 39.72 16 19 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 20 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 22 C -0.27 -12.39 9.70 22.86 0.22 -12.17 16 23 C 0.13 4.56 9.22 85.04 0.78 5.34 16 24 N -0.50 -17.07 10.38 -192.38 -2.00 -19.07 16 25 C 0.25 7.71 7.97 134.05 1.07 8.78 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.24 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 31 H 0.42 10.80 8.92 -92.71 -0.83 9.98 16 32 H 0.10 3.99 6.83 -2.91 -0.02 3.97 16 33 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 34 H 0.10 5.35 6.26 -2.91 -0.02 5.33 16 35 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 36 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 37 H 0.15 5.72 6.74 -2.91 -0.02 5.70 16 Total: -1.00 -64.64 321.11 3.73 -60.92 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.29 Total: 32.59 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 6.29 Total: -29.77 kcal Atomic # 7 Polarization: -98.57 SS G_CDS: -4.88 Total: -103.46 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -64.64 3.73 -60.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249666513.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.555 kcal (2) G-P(sol) polarization free energy of solvation -64.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds