Wall clock time and date at job start Tue Mar 31 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47039 * 2 1 4 4 H 1.08997 * 109.46663 * 305.43499 * 3 2 1 5 5 C 1.50692 * 109.47235 * 185.43167 * 3 2 1 6 6 H 1.08000 * 120.00660 * 239.99896 * 5 3 2 7 7 C 1.37881 * 119.99966 * 59.72371 * 5 3 2 8 8 N 1.31518 * 119.99729 * 0.27877 * 7 5 3 9 9 Si 1.86801 * 120.00137 * 180.27159 * 7 5 3 10 10 H 1.48505 * 109.46835 * 90.00133 * 9 7 5 11 11 H 1.48498 * 109.47259 * 210.00144 * 9 7 5 12 12 H 1.48501 * 109.47235 * 330.00531 * 9 7 5 13 13 N 1.46900 * 109.47018 * 65.43347 * 3 2 1 14 14 C 1.46903 * 110.99713 * 204.63158 * 13 3 2 15 15 H 1.08995 * 109.47240 * 327.62934 * 14 13 3 16 16 C 1.50702 * 109.46895 * 207.62686 * 14 13 3 17 17 C 1.38714 * 120.78042 * 139.99936 * 16 14 13 18 18 C 1.38141 * 119.19466 * 179.97438 * 17 16 14 19 19 N 1.31916 * 120.78399 * 0.02562 * 18 17 16 20 20 C 1.31946 * 121.70285 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 119.63363 * 179.97438 * 20 19 18 22 22 C 1.38399 * 120.73202 * 359.74169 * 20 19 18 23 23 C 1.52996 * 109.47303 * 87.63200 * 14 13 3 24 24 C 1.53000 * 117.49661 * 253.08201 * 23 14 13 25 25 C 1.52998 * 117.50220 * 184.42351 * 23 14 13 26 26 H 1.08999 * 109.47359 * 300.94347 * 1 2 3 27 27 H 1.09002 * 109.47177 * 60.95211 * 1 2 3 28 28 H 1.09000 * 109.46815 * 180.94641 * 1 2 3 29 29 H 1.08995 * 109.47614 * 239.99488 * 2 1 3 30 30 H 1.09004 * 109.46765 * 119.99550 * 2 1 3 31 31 H 0.97000 * 119.99467 * 179.97438 * 8 7 5 32 32 H 1.00899 * 110.99883 * 328.58122 * 13 3 2 33 33 H 1.08001 * 120.40084 * 359.97438 * 17 16 14 34 34 H 1.07997 * 119.61431 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.42517 * 180.26455 * 22 20 19 36 36 H 1.09000 * 115.55413 * 38.74392 * 23 14 13 37 37 H 1.09001 * 117.50032 * 359.97438 * 24 23 14 38 38 H 1.09000 * 117.50220 * 145.01769 * 24 23 14 39 39 H 1.09003 * 117.50230 * 214.97572 * 25 23 14 40 40 H 1.08999 * 117.49505 * 359.96839 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9836 -0.8373 5 6 3.5409 1.4447 -0.1345 6 1 4.1518 1.8873 0.6384 7 6 4.1347 0.8765 -1.2416 8 7 3.3908 0.3375 -2.1828 9 14 5.9955 0.8724 -1.4047 10 1 6.5439 -0.3611 -0.7858 11 1 6.3665 0.9121 -2.8421 12 1 6.5555 2.0629 -0.7159 13 7 1.6603 2.0961 1.2596 14 6 1.5888 3.5542 1.0954 15 1 2.3260 3.8734 0.3588 16 6 1.8751 4.2229 2.4152 17 6 2.6480 5.3732 2.4753 18 6 2.8894 5.9594 3.7026 19 7 2.3951 5.4379 4.8089 20 6 1.6559 4.3452 4.7902 21 17 1.0330 3.7047 6.2787 22 6 1.3675 3.7066 3.5967 23 6 0.1887 3.9457 0.6185 24 6 0.0364 4.3865 -0.8386 25 6 -0.0587 5.4188 0.2876 26 1 -0.3634 0.5284 0.8814 27 1 -0.3634 0.4990 -0.8984 28 1 -0.3633 -1.0275 0.0170 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8086 -0.0618 -2.9619 32 1 0.7881 1.7284 1.6092 33 1 3.0561 5.8051 1.5735 34 1 3.4900 6.8554 3.7572 35 1 0.7584 2.8148 3.5868 36 1 -0.6334 3.3848 1.0631 37 1 0.9337 4.3980 -1.4574 38 1 -0.8860 4.1160 -1.3525 39 1 -1.0437 5.8270 0.5142 40 1 0.7759 6.1091 0.4101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:54 Heat of formation + Delta-G solvation = 45.884671 kcal Electronic energy + Delta-G solvation = -21733.554008 eV Core-core repulsion = 18574.526437 eV Total energy + Delta-G solvation = -3159.027571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.23749 -38.04253 -36.48411 -35.55819 -33.36317 -31.93780 -30.88317 -30.47089 -27.10307 -25.29589 -23.44887 -22.74208 -22.34306 -22.05775 -20.11284 -19.61051 -16.85878 -16.48799 -16.24146 -15.69231 -15.45440 -14.90381 -14.53552 -14.16774 -14.05029 -13.64627 -13.53000 -12.94843 -12.38817 -12.22848 -11.92322 -11.78761 -11.58383 -11.34450 -11.26793 -11.22339 -11.03139 -10.91119 -10.65727 -10.32381 -10.09098 -10.01563 -9.86707 -9.70216 -9.37386 -9.34918 -9.09326 -8.82372 -8.40354 -7.38550 -6.02530 -4.06852 1.11300 1.37287 1.94019 3.28704 3.35797 3.39198 3.79677 3.98141 4.39284 4.60008 4.64840 4.98663 5.03523 5.14287 5.22652 5.25223 5.27645 5.41097 5.46865 5.70414 5.73947 5.79700 5.95423 6.08594 6.10710 6.13413 6.13814 6.29697 6.36026 6.37202 6.62377 6.67312 6.79286 7.03380 7.09190 7.41966 7.71418 7.83818 7.84826 8.16763 8.31604 8.63293 9.01059 9.58558 11.02527 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.005031 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.201981 B = 5564.698250 C = 5906.225765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.010 0.990 5 C -0.496 4.496 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.674 5.674 14 C 0.157 3.843 15 H 0.100 0.900 16 C 0.013 3.987 17 C -0.167 4.167 18 C 0.112 3.888 19 N -0.492 5.492 20 C 0.171 3.829 21 Cl -0.046 7.046 22 C -0.130 4.130 23 C -0.173 4.173 24 C -0.166 4.166 25 C -0.181 4.181 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.036 0.964 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.260 0.740 32 H 0.320 0.680 33 H 0.139 0.861 34 H 0.160 0.840 35 H 0.142 0.858 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.745 8.671 7.012 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.114 3.886 4 H 0.028 0.972 5 C -0.535 4.535 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.304 5.304 14 C 0.046 3.954 15 H 0.118 0.882 16 C 0.004 3.996 17 C -0.188 4.188 18 C -0.045 4.045 19 N -0.204 5.204 20 C 0.007 3.993 21 Cl -0.017 7.017 22 C -0.151 4.151 23 C -0.193 4.193 24 C -0.203 4.203 25 C -0.219 4.219 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.139 0.861 33 H 0.156 0.844 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.949 8.890 8.003 13.359 hybrid contribution -0.030 -0.505 -1.273 1.370 sum -5.979 8.385 6.730 12.302 Atomic orbital electron populations 1.21874 0.99583 0.99538 0.99648 1.21774 0.91232 1.00327 1.03152 1.19177 0.95319 0.89979 0.84083 0.97193 1.21200 0.91217 1.36642 1.04407 0.92184 1.24925 0.97962 0.95567 0.95839 1.69865 1.34656 1.39189 1.09681 0.86594 0.85941 0.78485 0.76954 1.20752 1.21412 1.20019 1.60848 1.35517 1.00307 1.33745 1.20075 0.93534 0.90468 0.91306 0.88174 1.20424 0.91315 0.92263 0.95568 1.22119 1.00058 0.96922 0.99654 1.22500 0.96508 0.98735 0.86708 1.66908 1.10123 1.10796 1.32529 1.21559 0.97126 0.93391 0.87240 1.98380 1.84740 1.84262 1.34336 1.21590 1.02008 1.01047 0.90420 1.23126 0.99072 0.97592 0.99472 1.22977 1.03437 1.02774 0.91123 1.22894 1.02431 0.92149 1.04417 0.94731 0.93799 0.94464 0.88151 0.94104 0.93054 0.86108 0.84365 0.82270 0.84064 0.88189 0.88214 0.89154 0.89372 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.76 37.16 0.36 -2.33 16 2 C -0.13 -2.80 5.36 -26.73 -0.14 -2.95 16 3 C 0.22 5.02 1.85 -68.87 -0.13 4.90 16 4 H 0.01 0.26 7.60 -51.93 -0.39 -0.14 16 5 C -0.50 -12.89 8.49 -34.44 -0.29 -13.18 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.53 5.29 -17.82 -0.09 1.43 16 8 N -0.89 -24.31 11.28 55.43 0.63 -23.69 16 9 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 13 N -0.67 -12.79 5.50 -102.17 -0.56 -13.36 16 14 C 0.16 2.60 2.21 -68.86 -0.15 2.44 16 15 H 0.10 1.88 7.29 -51.93 -0.38 1.50 16 16 C 0.01 0.20 4.74 -104.32 -0.49 -0.29 16 17 C -0.17 -2.26 9.70 -39.44 -0.38 -2.64 16 18 C 0.11 1.46 11.18 -17.55 -0.20 1.26 16 19 N -0.49 -7.45 10.34 -10.36 -0.11 -7.56 16 20 C 0.17 2.57 7.27 -17.44 -0.13 2.45 16 21 Cl -0.05 -0.62 29.11 -51.86 -1.51 -2.13 16 22 C -0.13 -1.94 9.20 -39.40 -0.36 -2.31 16 23 C -0.17 -2.46 5.01 -90.62 -0.45 -2.91 16 24 C -0.17 -2.32 10.03 -26.69 -0.27 -2.59 16 25 C -0.18 -2.23 9.99 -26.70 -0.27 -2.50 16 26 H 0.03 0.55 6.42 -51.93 -0.33 0.22 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.10 2.54 5.93 -51.93 -0.31 2.23 16 30 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.32 5.56 5.65 -39.29 -0.22 5.34 16 33 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.14 2.02 7.48 -52.49 -0.39 1.62 16 36 H 0.10 1.39 7.96 -51.93 -0.41 0.97 16 37 H 0.10 1.53 8.08 -51.93 -0.42 1.11 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.09 1.09 8.07 -51.93 -0.42 0.67 16 LS Contribution 344.58 15.07 5.19 5.19 Total: -1.00 -27.38 344.58 -10.16 -37.54 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.78 Total: 7.35 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -3.00 Total: -19.21 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: -0.04 Total: -44.60 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.51 Total: -2.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.38 -10.16 -37.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.428 kcal (2) G-P(sol) polarization free energy of solvation -27.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds