Wall clock time and date at job start Tue Mar 31 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47039 * 2 1 4 4 H 1.08997 * 109.46663 * 305.43499 * 3 2 1 5 5 C 1.50692 * 109.47235 * 185.43167 * 3 2 1 6 6 H 1.08000 * 120.00660 * 239.99896 * 5 3 2 7 7 C 1.37881 * 119.99966 * 59.72371 * 5 3 2 8 8 N 1.31518 * 119.99729 * 0.27877 * 7 5 3 9 9 Si 1.86801 * 120.00137 * 180.27159 * 7 5 3 10 10 H 1.48505 * 109.46835 * 90.00133 * 9 7 5 11 11 H 1.48498 * 109.47259 * 210.00144 * 9 7 5 12 12 H 1.48501 * 109.47235 * 330.00531 * 9 7 5 13 13 N 1.46900 * 109.47018 * 65.43347 * 3 2 1 14 14 C 1.46903 * 110.99713 * 204.63158 * 13 3 2 15 15 H 1.08995 * 109.47240 * 327.62934 * 14 13 3 16 16 C 1.50702 * 109.46895 * 207.62686 * 14 13 3 17 17 C 1.38714 * 120.78042 * 139.99936 * 16 14 13 18 18 C 1.38141 * 119.19466 * 179.97438 * 17 16 14 19 19 N 1.31916 * 120.78399 * 0.02562 * 18 17 16 20 20 C 1.31946 * 121.70285 * 359.97438 * 19 18 17 21 21 Cl 1.73601 * 119.63363 * 179.97438 * 20 19 18 22 22 C 1.38399 * 120.73202 * 359.74169 * 20 19 18 23 23 C 1.52996 * 109.47303 * 87.63200 * 14 13 3 24 24 C 1.53000 * 117.49661 * 253.08201 * 23 14 13 25 25 C 1.52998 * 117.50220 * 184.42351 * 23 14 13 26 26 H 1.08999 * 109.47359 * 300.94347 * 1 2 3 27 27 H 1.09002 * 109.47177 * 60.95211 * 1 2 3 28 28 H 1.09000 * 109.46815 * 180.94641 * 1 2 3 29 29 H 1.08995 * 109.47614 * 239.99488 * 2 1 3 30 30 H 1.09004 * 109.46765 * 119.99550 * 2 1 3 31 31 H 0.97000 * 119.99467 * 179.97438 * 8 7 5 32 32 H 1.00899 * 110.99883 * 328.58122 * 13 3 2 33 33 H 1.08001 * 120.40084 * 359.97438 * 17 16 14 34 34 H 1.07997 * 119.61431 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.42517 * 180.26455 * 22 20 19 36 36 H 1.09000 * 115.55413 * 38.74392 * 23 14 13 37 37 H 1.09001 * 117.50032 * 359.97438 * 24 23 14 38 38 H 1.09000 * 117.50220 * 145.01769 * 24 23 14 39 39 H 1.09003 * 117.50230 * 214.97572 * 25 23 14 40 40 H 1.08999 * 117.49505 * 359.96839 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9836 -0.8373 5 6 3.5409 1.4447 -0.1345 6 1 4.1518 1.8873 0.6384 7 6 4.1347 0.8765 -1.2416 8 7 3.3908 0.3375 -2.1828 9 14 5.9955 0.8724 -1.4047 10 1 6.5439 -0.3611 -0.7858 11 1 6.3665 0.9121 -2.8421 12 1 6.5555 2.0629 -0.7159 13 7 1.6603 2.0961 1.2596 14 6 1.5888 3.5542 1.0954 15 1 2.3260 3.8734 0.3588 16 6 1.8751 4.2229 2.4152 17 6 2.6480 5.3732 2.4753 18 6 2.8894 5.9594 3.7026 19 7 2.3951 5.4379 4.8089 20 6 1.6559 4.3452 4.7902 21 17 1.0330 3.7047 6.2787 22 6 1.3675 3.7066 3.5967 23 6 0.1887 3.9457 0.6185 24 6 0.0364 4.3865 -0.8386 25 6 -0.0587 5.4188 0.2876 26 1 -0.3634 0.5284 0.8814 27 1 -0.3634 0.4990 -0.8984 28 1 -0.3633 -1.0275 0.0170 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8086 -0.0618 -2.9619 32 1 0.7881 1.7284 1.6092 33 1 3.0561 5.8051 1.5735 34 1 3.4900 6.8554 3.7572 35 1 0.7584 2.8148 3.5868 36 1 -0.6334 3.3848 1.0631 37 1 0.9337 4.3980 -1.4574 38 1 -0.8860 4.1160 -1.3525 39 1 -1.0437 5.8270 0.5142 40 1 0.7759 6.1091 0.4101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:54 Heat of formation + Delta-G solvation = 31.798236 kcal Electronic energy + Delta-G solvation = -21734.164841 eV Core-core repulsion = 18574.526437 eV Total energy + Delta-G solvation = -3159.638405 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.37083 -39.31184 -37.57416 -37.08950 -34.74066 -33.72743 -32.04736 -31.84883 -28.80922 -26.81538 -24.73449 -24.24585 -23.50959 -23.14620 -21.46121 -21.22685 -18.32862 -17.96564 -17.60068 -16.87585 -16.70485 -16.54420 -15.94634 -15.42269 -15.33445 -14.93399 -14.77788 -14.68425 -13.89288 -13.58372 -13.44048 -13.06924 -12.95281 -12.74933 -12.67130 -12.53155 -12.42178 -12.36042 -12.22087 -11.98507 -11.63798 -11.50440 -11.40618 -11.13721 -10.93148 -10.53287 -10.47313 -10.39596 -9.90248 -8.98264 -8.04376 -6.15006 0.01524 0.24500 0.84659 1.40286 1.43168 1.51249 2.44521 2.69498 2.88885 3.20862 3.38822 3.57860 3.84191 3.88858 4.06632 4.10848 4.14045 4.25198 4.32199 4.49940 4.54029 4.61037 4.66907 4.74255 4.78393 4.82337 4.94657 5.02604 5.17291 5.20186 5.26334 5.31008 5.39632 5.42173 5.58725 5.65555 5.79388 5.93185 6.39127 6.52446 6.75659 6.97431 6.99925 7.53758 8.98101 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.013601 B = 0.005031 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.201981 B = 5564.698250 C = 5906.225765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.233 3.767 4 H -0.014 1.014 5 C -0.508 4.508 6 H 0.045 0.955 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.945 3.055 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.677 5.677 14 C 0.165 3.835 15 H 0.072 0.928 16 C 0.001 3.999 17 C -0.168 4.168 18 C 0.117 3.883 19 N -0.508 5.508 20 C 0.160 3.840 21 Cl -0.037 7.037 22 C -0.136 4.136 23 C -0.182 4.182 24 C -0.177 4.177 25 C -0.156 4.156 26 H 0.056 0.944 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.032 0.968 31 H 0.259 0.741 32 H 0.330 0.670 33 H 0.155 0.845 34 H 0.195 0.805 35 H 0.144 0.856 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.203 9.899 7.938 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.125 3.875 4 H 0.004 0.996 5 C -0.547 4.547 6 H 0.063 0.937 7 C -0.183 4.183 8 N -0.556 5.556 9 Si 0.772 3.228 10 H -0.207 1.207 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.308 5.308 14 C 0.054 3.946 15 H 0.090 0.910 16 C -0.008 4.008 17 C -0.188 4.188 18 C -0.039 4.039 19 N -0.220 5.220 20 C -0.003 4.003 21 Cl -0.009 7.009 22 C -0.157 4.157 23 C -0.201 4.201 24 C -0.214 4.214 25 C -0.193 4.193 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.150 0.850 33 H 0.173 0.827 34 H 0.212 0.788 35 H 0.162 0.838 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.419 10.126 8.944 14.958 hybrid contribution 0.131 -0.849 -1.534 1.758 sum -6.288 9.278 7.410 13.436 Atomic orbital electron populations 1.21731 0.96270 1.00973 1.00487 1.21609 0.94217 0.99344 1.01008 1.18853 0.93457 0.90366 0.84841 0.99623 1.21452 0.93044 1.36217 1.03947 0.93658 1.25541 1.01426 0.95536 0.95776 1.69983 1.35863 1.39797 1.09965 0.85765 0.81864 0.78301 0.76919 1.20747 1.21010 1.19743 1.60685 1.36405 1.01951 1.31754 1.19886 0.94243 0.88823 0.91621 0.90972 1.20355 0.92469 0.93185 0.94813 1.22352 0.99348 0.96359 1.00755 1.23068 0.95757 0.99280 0.85810 1.66993 1.10514 1.10984 1.33479 1.21683 0.97400 0.93624 0.87636 1.98377 1.84625 1.84179 1.33710 1.21603 1.02362 1.01269 0.90443 1.23012 0.97841 0.99658 0.99636 1.22949 1.02951 1.04436 0.91086 1.22969 1.03728 0.90930 1.01682 0.92476 0.94233 0.92801 0.91463 0.94953 0.93193 0.84993 0.82731 0.78782 0.83817 0.87380 0.90406 0.88190 0.87289 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.76 71.98 0.70 -4.12 16 2 C -0.12 -5.53 5.36 30.59 0.16 -5.36 16 3 C 0.23 10.78 1.85 44.17 0.08 10.86 16 4 H -0.01 -0.70 7.60 -2.39 -0.02 -0.72 16 5 C -0.51 -26.96 8.49 25.60 0.22 -26.75 16 6 H 0.05 2.49 7.81 -2.91 -0.02 2.46 16 7 C 0.02 0.84 5.29 84.66 0.45 1.29 16 8 N -0.92 -50.88 11.28 21.45 0.24 -50.64 16 9 Si 0.94 43.26 29.54 68.60 2.03 45.29 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.68 -25.71 5.50 -477.17 -2.62 -28.33 16 14 C 0.17 5.40 2.21 44.17 0.10 5.50 16 15 H 0.07 2.76 7.29 -2.39 -0.02 2.75 16 16 C 0.00 0.02 4.74 -19.67 -0.09 -0.07 16 17 C -0.17 -4.23 9.70 22.36 0.22 -4.01 16 18 C 0.12 2.75 11.18 84.66 0.95 3.70 16 19 N -0.51 -14.38 10.34 -186.69 -1.93 -16.31 16 20 C 0.16 4.59 7.27 84.71 0.62 5.21 16 21 Cl -0.04 -0.96 29.11 -2.72 -0.08 -1.04 16 22 C -0.14 -3.91 9.20 22.39 0.21 -3.70 16 23 C -0.18 -4.98 5.01 -10.80 -0.05 -5.04 16 24 C -0.18 -4.84 10.03 30.62 0.31 -4.53 16 25 C -0.16 -3.50 9.99 30.62 0.31 -3.20 16 26 H 0.06 1.73 6.42 -2.39 -0.02 1.72 16 27 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 3.49 5.93 -2.39 -0.01 3.47 16 30 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.26 13.85 8.31 -92.71 -0.77 13.07 16 32 H 0.33 11.22 5.65 -89.69 -0.51 10.72 16 33 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.14 3.95 7.48 -2.91 -0.02 3.93 16 36 H 0.11 2.80 7.96 -2.39 -0.02 2.78 16 37 H 0.08 2.46 8.08 -2.39 -0.02 2.44 16 38 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.10 2.11 8.07 -2.39 -0.02 2.09 16 Total: -1.00 -59.26 344.58 2.33 -56.93 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.53 Total: 24.33 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 4.16 Total: -30.23 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -4.31 Total: -95.28 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -59.26 2.33 -56.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.731 kcal (2) G-P(sol) polarization free energy of solvation -59.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds