Wall clock time and date at job start Tue Mar 31 2020 06:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47295 * 2 1 4 4 H 1.08994 * 109.47259 * 306.34932 * 3 2 1 5 5 C 1.50694 * 109.47323 * 186.34438 * 3 2 1 6 6 H 1.08006 * 120.00700 * 245.13157 * 5 3 2 7 7 C 1.37881 * 119.99576 * 65.12982 * 5 3 2 8 8 N 1.31520 * 119.99776 * 193.34857 * 7 5 3 9 9 Si 1.86797 * 120.00323 * 13.35338 * 7 5 3 10 10 H 1.48500 * 109.47164 * 93.98017 * 9 7 5 11 11 H 1.48493 * 109.47160 * 213.98286 * 9 7 5 12 12 H 1.48497 * 109.46937 * 333.98559 * 9 7 5 13 13 N 1.46902 * 109.46810 * 66.34976 * 3 2 1 14 14 C 1.46905 * 110.99896 * 201.22604 * 13 3 2 15 15 H 1.09002 * 109.46848 * 328.51940 * 14 13 3 16 16 C 1.50695 * 109.46937 * 208.51736 * 14 13 3 17 17 C 1.38650 * 120.80032 * 333.13603 * 16 14 13 18 18 C 1.38186 * 119.18294 * 179.97438 * 17 16 14 19 19 N 1.31877 * 120.79397 * 0.02562 * 18 17 16 20 20 C 1.31848 * 121.73922 * 359.95450 * 19 18 17 21 21 C 1.38351 * 120.74515 * 0.04603 * 20 19 18 22 22 Cl 1.73598 * 120.43586 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.47075 * 88.51614 * 14 13 3 24 24 C 1.53002 * 117.49461 * 134.32273 * 23 14 13 25 25 C 1.53001 * 117.49533 * 65.66598 * 23 14 13 26 26 H 1.09005 * 109.46942 * 304.48077 * 1 2 3 27 27 H 1.09002 * 109.47581 * 64.48031 * 1 2 3 28 28 H 1.09002 * 109.47425 * 184.48669 * 1 2 3 29 29 H 1.09002 * 109.46828 * 240.00423 * 2 1 3 30 30 H 1.08999 * 109.47188 * 120.00235 * 2 1 3 31 31 H 0.97001 * 119.99791 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00008 * 325.17859 * 13 3 2 33 33 H 1.08006 * 120.40419 * 359.69936 * 17 16 14 34 34 H 1.07999 * 119.60358 * 179.97438 * 18 17 16 35 35 H 1.07994 * 119.63189 * 180.02562 * 20 19 18 36 36 H 1.08995 * 115.54926 * 279.99468 * 23 14 13 37 37 H 1.09000 * 117.49938 * 359.97438 * 24 23 14 38 38 H 1.08999 * 117.49876 * 145.02601 * 24 23 14 39 39 H 1.09008 * 117.49471 * 214.97655 * 25 23 14 40 40 H 1.08997 * 117.50582 * 359.97138 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5869 1.9881 -0.8276 5 6 3.5387 1.4454 -0.1570 6 1 4.1651 1.8082 0.6446 7 6 4.1104 0.9848 -1.3241 8 7 5.4016 0.7388 -1.3713 9 14 3.0513 0.7102 -2.8381 10 1 3.0851 1.9242 -3.6926 11 1 3.5744 -0.4492 -3.6044 12 1 1.6526 0.4374 -2.4208 13 7 1.6794 2.0893 1.2687 14 6 1.6843 3.5521 1.1339 15 1 2.4347 3.8468 0.4002 16 6 2.0103 4.1782 2.4653 17 6 1.7174 3.5201 3.6500 18 6 2.0314 4.1249 4.8522 19 7 2.6021 5.3134 4.8812 20 6 2.8958 5.9690 3.7756 21 6 2.6111 5.4268 2.5350 22 17 3.0006 6.2974 1.0845 23 6 0.3051 4.0263 0.6713 24 6 -0.3068 5.2291 1.3923 25 6 -0.8694 3.8257 1.6312 26 1 -0.3633 0.5818 0.8472 27 1 -0.3634 0.4427 -0.9274 28 1 -0.3634 -1.0245 0.0804 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.8039 0.4151 -2.1925 32 1 0.7855 1.7598 1.6013 33 1 1.2457 2.5486 3.6335 34 1 1.8059 3.6185 5.7791 35 1 3.3634 6.9404 3.8391 36 1 0.1063 3.9244 -0.3955 37 1 0.2730 5.6823 2.1964 38 1 -0.9085 5.9183 0.7999 39 1 -1.8410 3.5922 1.1957 40 1 -0.6597 3.3555 2.5919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:07 Heat of formation + Delta-G solvation = 57.797659 kcal Electronic energy + Delta-G solvation = -22240.385868 eV Core-core repulsion = 19081.874883 eV Total energy + Delta-G solvation = -3158.510985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48616 -38.13822 -36.39222 -35.78147 -33.02113 -32.05214 -30.90722 -30.76123 -27.45701 -25.71952 -23.41887 -22.82885 -22.46721 -22.10830 -20.03951 -19.46704 -16.85075 -16.77098 -16.51923 -16.06806 -15.76785 -14.86524 -14.50947 -14.18385 -13.97061 -13.75560 -13.60133 -12.99955 -12.58723 -12.40220 -12.11952 -11.89006 -11.76024 -11.67807 -11.46703 -11.37042 -10.98346 -10.90158 -10.65260 -10.33871 -10.23074 -10.08076 -10.04842 -9.55693 -9.38760 -9.28284 -9.15535 -8.76241 -8.52971 -7.52860 -6.08460 -4.02583 1.08749 1.33904 2.25860 3.24122 3.33782 3.36117 3.81156 3.88408 4.39773 4.51689 4.55159 4.82154 4.88010 5.00533 5.04864 5.12951 5.20502 5.37678 5.45288 5.61494 5.67632 5.77982 5.78330 5.84113 5.94007 5.99248 6.06200 6.13645 6.17437 6.29072 6.47403 6.48721 6.61148 6.66699 6.70258 6.90951 7.17598 7.71390 7.84694 7.95203 8.14012 8.69522 9.07027 9.56853 11.04787 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.006108 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.559642 B = 4582.722233 C = 5038.093511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C 0.197 3.803 4 H -0.002 1.002 5 C -0.503 4.503 6 H 0.079 0.921 7 C 0.073 3.927 8 N -0.893 5.893 9 Si 0.857 3.143 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.252 1.252 13 N -0.663 5.663 14 C 0.151 3.849 15 H 0.114 0.886 16 C 0.003 3.997 17 C -0.137 4.137 18 C 0.092 3.908 19 N -0.480 5.480 20 C 0.104 3.896 21 C -0.087 4.087 22 Cl -0.052 7.052 23 C -0.169 4.169 24 C -0.175 4.175 25 C -0.180 4.180 26 H 0.047 0.953 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.262 0.738 32 H 0.322 0.678 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.652 7.668 7.243 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.165 4.165 3 C 0.088 3.912 4 H 0.015 0.985 5 C -0.541 4.541 6 H 0.097 0.903 7 C -0.129 4.129 8 N -0.530 5.530 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.177 1.177 13 N -0.292 5.292 14 C 0.040 3.960 15 H 0.132 0.868 16 C -0.006 4.006 17 C -0.157 4.157 18 C -0.064 4.064 19 N -0.190 5.190 20 C -0.054 4.054 21 C -0.117 4.117 22 Cl -0.024 7.024 23 C -0.189 4.189 24 C -0.213 4.213 25 C -0.218 4.218 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.163 0.837 34 H 0.175 0.825 35 H 0.176 0.824 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.609 7.978 8.049 15.523 hybrid contribution -1.323 -0.418 -2.502 2.860 sum -11.932 7.560 5.547 15.175 Atomic orbital electron populations 1.21918 0.98563 1.00290 1.00513 1.22085 0.92457 0.99914 1.02087 1.19519 0.96736 0.89626 0.85288 0.98484 1.20951 0.89086 1.42103 1.01973 0.90324 1.24905 0.94676 0.94807 0.98489 1.69958 1.11023 1.44749 1.27310 0.87315 0.82324 0.77923 0.84063 1.20894 1.21384 1.17655 1.60659 1.34176 1.01774 1.32641 1.20055 0.94542 0.89485 0.91914 0.86833 1.20292 0.92218 0.90885 0.97210 1.22005 1.00943 1.01230 0.91509 1.22801 0.94423 0.91125 0.98077 1.67747 1.12141 1.08941 1.30141 1.22633 0.97062 0.99781 0.85895 1.21983 1.04669 0.95500 0.89517 1.98376 1.92633 1.75142 1.36205 1.23046 0.94464 1.03028 0.98395 1.23008 1.03854 0.91063 1.03391 1.22940 0.97627 1.00053 1.01137 0.93421 0.93792 0.93791 0.92063 0.91826 0.92777 0.85873 0.83723 0.82531 0.82394 0.87450 0.88900 0.89149 0.89021 0.88727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.82 37.15 0.36 -2.13 16 2 C -0.13 -2.56 4.76 -26.73 -0.13 -2.69 16 3 C 0.20 4.28 1.41 -68.87 -0.10 4.18 16 4 H 0.00 -0.05 6.49 -51.93 -0.34 -0.39 16 5 C -0.50 -13.56 8.75 -34.44 -0.30 -13.86 16 6 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 7 C 0.07 2.05 5.35 -17.82 -0.10 1.95 16 8 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 9 Si 0.86 20.57 25.74 -169.99 -4.38 16.19 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.25 -5.60 5.41 56.52 0.31 -5.29 16 13 N -0.66 -12.18 5.08 -102.17 -0.52 -12.70 16 14 C 0.15 2.57 2.06 -68.86 -0.14 2.42 16 15 H 0.11 2.31 6.48 -51.93 -0.34 1.97 16 16 C 0.00 0.05 3.39 -104.28 -0.35 -0.30 16 17 C -0.14 -1.90 8.24 -39.45 -0.33 -2.23 16 18 C 0.09 1.19 11.18 -17.55 -0.20 0.99 16 19 N -0.48 -6.83 10.36 -13.23 -0.14 -6.96 16 20 C 0.10 1.44 10.99 -17.50 -0.19 1.25 16 21 C -0.09 -1.30 4.90 -39.35 -0.19 -1.50 16 22 Cl -0.05 -0.77 27.54 -51.86 -1.43 -2.20 16 23 C -0.17 -2.43 5.77 -90.62 -0.52 -2.95 16 24 C -0.18 -2.19 9.66 -26.69 -0.26 -2.44 16 25 C -0.18 -2.16 9.28 -26.69 -0.25 -2.41 16 26 H 0.05 0.68 6.35 -51.93 -0.33 0.35 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.33 4.89 -51.93 -0.25 1.08 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.32 5.16 5.28 -39.29 -0.21 4.95 16 33 H 0.15 1.86 7.06 -52.48 -0.37 1.49 16 34 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.16 1.81 8.06 -52.49 -0.42 1.38 16 36 H 0.11 1.61 8.14 -51.93 -0.42 1.18 16 37 H 0.09 1.22 5.59 -51.93 -0.29 0.93 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 40 H 0.09 1.10 6.79 -51.93 -0.35 0.75 16 LS Contribution 328.13 15.07 4.94 4.94 Total: -1.00 -29.45 328.13 -8.94 -38.40 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.51 Total: 8.11 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -2.69 Total: -19.71 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.12 Total: -45.73 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.38 Total: 16.19 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.43 Total: -2.20 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.45 -8.94 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.194 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds