Wall clock time and date at job start Tue Mar 31 2020 06:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47295 * 2 1 4 4 H 1.08994 * 109.47259 * 306.34932 * 3 2 1 5 5 C 1.50694 * 109.47323 * 186.34438 * 3 2 1 6 6 H 1.08006 * 120.00700 * 245.13157 * 5 3 2 7 7 C 1.37881 * 119.99576 * 65.12982 * 5 3 2 8 8 N 1.31520 * 119.99776 * 193.34857 * 7 5 3 9 9 Si 1.86797 * 120.00323 * 13.35338 * 7 5 3 10 10 H 1.48500 * 109.47164 * 93.98017 * 9 7 5 11 11 H 1.48493 * 109.47160 * 213.98286 * 9 7 5 12 12 H 1.48497 * 109.46937 * 333.98559 * 9 7 5 13 13 N 1.46902 * 109.46810 * 66.34976 * 3 2 1 14 14 C 1.46905 * 110.99896 * 201.22604 * 13 3 2 15 15 H 1.09002 * 109.46848 * 328.51940 * 14 13 3 16 16 C 1.50695 * 109.46937 * 208.51736 * 14 13 3 17 17 C 1.38650 * 120.80032 * 333.13603 * 16 14 13 18 18 C 1.38186 * 119.18294 * 179.97438 * 17 16 14 19 19 N 1.31877 * 120.79397 * 0.02562 * 18 17 16 20 20 C 1.31848 * 121.73922 * 359.95450 * 19 18 17 21 21 C 1.38351 * 120.74515 * 0.04603 * 20 19 18 22 22 Cl 1.73598 * 120.43586 * 179.97438 * 21 20 19 23 23 C 1.53002 * 109.47075 * 88.51614 * 14 13 3 24 24 C 1.53002 * 117.49461 * 134.32273 * 23 14 13 25 25 C 1.53001 * 117.49533 * 65.66598 * 23 14 13 26 26 H 1.09005 * 109.46942 * 304.48077 * 1 2 3 27 27 H 1.09002 * 109.47581 * 64.48031 * 1 2 3 28 28 H 1.09002 * 109.47425 * 184.48669 * 1 2 3 29 29 H 1.09002 * 109.46828 * 240.00423 * 2 1 3 30 30 H 1.08999 * 109.47188 * 120.00235 * 2 1 3 31 31 H 0.97001 * 119.99791 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00008 * 325.17859 * 13 3 2 33 33 H 1.08006 * 120.40419 * 359.69936 * 17 16 14 34 34 H 1.07999 * 119.60358 * 179.97438 * 18 17 16 35 35 H 1.07994 * 119.63189 * 180.02562 * 20 19 18 36 36 H 1.08995 * 115.54926 * 279.99468 * 23 14 13 37 37 H 1.09000 * 117.49938 * 359.97438 * 24 23 14 38 38 H 1.08999 * 117.49876 * 145.02601 * 24 23 14 39 39 H 1.09008 * 117.49471 * 214.97655 * 25 23 14 40 40 H 1.08997 * 117.50582 * 359.97138 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5869 1.9881 -0.8276 5 6 3.5387 1.4454 -0.1570 6 1 4.1651 1.8082 0.6446 7 6 4.1104 0.9848 -1.3241 8 7 5.4016 0.7388 -1.3713 9 14 3.0513 0.7102 -2.8381 10 1 3.0851 1.9242 -3.6926 11 1 3.5744 -0.4492 -3.6044 12 1 1.6526 0.4374 -2.4208 13 7 1.6794 2.0893 1.2687 14 6 1.6843 3.5521 1.1339 15 1 2.4347 3.8468 0.4002 16 6 2.0103 4.1782 2.4653 17 6 1.7174 3.5201 3.6500 18 6 2.0314 4.1249 4.8522 19 7 2.6021 5.3134 4.8812 20 6 2.8958 5.9690 3.7756 21 6 2.6111 5.4268 2.5350 22 17 3.0006 6.2974 1.0845 23 6 0.3051 4.0263 0.6713 24 6 -0.3068 5.2291 1.3923 25 6 -0.8694 3.8257 1.6312 26 1 -0.3633 0.5818 0.8472 27 1 -0.3634 0.4427 -0.9274 28 1 -0.3634 -1.0245 0.0804 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.8039 0.4151 -2.1925 32 1 0.7855 1.7598 1.6013 33 1 1.2457 2.5486 3.6335 34 1 1.8059 3.6185 5.7791 35 1 3.3634 6.9404 3.8391 36 1 0.1063 3.9244 -0.3955 37 1 0.2730 5.6823 2.1964 38 1 -0.9085 5.9183 0.7999 39 1 -1.8410 3.5922 1.1957 40 1 -0.6597 3.3555 2.5919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161831.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:06 Heat of formation + Delta-G solvation = 39.741291 kcal Electronic energy + Delta-G solvation = -22241.168851 eV Core-core repulsion = 19081.874883 eV Total energy + Delta-G solvation = -3159.293968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.61744 -39.36447 -37.56501 -37.23836 -34.44384 -33.90073 -32.12006 -31.95671 -29.18107 -27.13692 -24.67017 -24.12545 -23.82148 -23.08787 -21.57714 -20.82229 -18.81539 -18.02373 -17.71552 -17.19798 -16.86190 -16.57664 -15.86086 -15.62843 -15.37391 -14.82708 -14.81152 -14.68386 -14.14152 -13.82875 -13.53430 -13.26054 -13.00175 -12.90154 -12.73193 -12.66944 -12.36987 -12.30862 -12.15645 -12.07906 -11.72401 -11.39738 -11.25801 -11.17628 -10.98560 -10.66919 -10.49651 -10.39091 -9.87155 -9.06617 -8.25910 -6.23354 -0.00372 0.20295 1.11316 1.31584 1.35980 1.44505 2.35452 2.71967 2.84607 3.07940 3.28246 3.52555 3.71440 3.78454 3.91395 4.00853 4.04456 4.21835 4.32698 4.40666 4.45555 4.51915 4.54657 4.71432 4.76843 4.82453 4.92472 4.97333 5.00739 5.14762 5.20420 5.20831 5.23014 5.25078 5.37737 5.52991 5.60386 5.82396 6.09020 6.46650 6.82612 6.87433 6.97453 7.40055 8.91587 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.006108 C = 0.005556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.559642 B = 4582.722233 C = 5038.093511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.205 3.795 4 H -0.005 1.005 5 C -0.498 4.498 6 H 0.027 0.973 7 C 0.014 3.986 8 N -0.947 5.947 9 Si 0.921 3.079 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.219 1.219 13 N -0.666 5.666 14 C 0.157 3.843 15 H 0.071 0.929 16 C -0.012 4.012 17 C -0.141 4.141 18 C 0.098 3.902 19 N -0.491 5.491 20 C 0.104 3.896 21 C -0.100 4.100 22 Cl -0.060 7.060 23 C -0.188 4.188 24 C -0.167 4.167 25 C -0.159 4.159 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.262 0.738 32 H 0.340 0.660 33 H 0.156 0.844 34 H 0.191 0.809 35 H 0.178 0.822 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.982 7.517 8.105 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.096 3.904 4 H 0.012 0.988 5 C -0.537 4.537 6 H 0.045 0.955 7 C -0.183 4.183 8 N -0.588 5.588 9 Si 0.746 3.254 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.142 1.142 13 N -0.298 5.298 14 C 0.046 3.954 15 H 0.089 0.911 16 C -0.021 4.021 17 C -0.161 4.161 18 C -0.058 4.058 19 N -0.200 5.200 20 C -0.053 4.053 21 C -0.129 4.129 22 Cl -0.031 7.031 23 C -0.208 4.208 24 C -0.205 4.205 25 C -0.196 4.196 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.161 0.839 33 H 0.174 0.826 34 H 0.208 0.792 35 H 0.195 0.805 36 H 0.118 0.882 37 H 0.104 0.896 38 H 0.122 0.878 39 H 0.130 0.870 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.979 7.841 8.935 18.350 hybrid contribution -0.201 -0.311 -2.629 2.655 sum -14.179 7.530 6.306 17.249 Atomic orbital electron populations 1.21830 0.94695 1.02267 1.01588 1.21961 0.95857 0.97772 1.00976 1.19264 0.93090 0.91294 0.86797 0.98755 1.21204 0.91788 1.40415 1.00258 0.95500 1.25737 0.95817 0.94948 1.01843 1.70120 1.13345 1.47147 1.28182 0.86277 0.82200 0.77412 0.79561 1.21136 1.21549 1.14167 1.60454 1.35498 1.02858 1.30957 1.19813 0.95160 0.88500 0.91928 0.91071 1.20278 0.93293 0.91423 0.97096 1.22168 1.01107 1.01573 0.91247 1.23335 0.92880 0.90578 0.99027 1.67841 1.12554 1.09590 1.30062 1.22949 0.96529 1.00478 0.85377 1.22091 1.05398 0.95698 0.89750 1.98368 1.92750 1.75239 1.36752 1.22820 0.93886 1.05575 0.98473 1.23006 1.03369 0.91335 1.02752 1.23051 0.97103 0.99061 1.00420 0.91406 0.93513 0.91565 0.93806 0.92512 0.92920 0.83949 0.82593 0.79178 0.80492 0.88246 0.89641 0.87823 0.87002 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.13 9.82 71.98 0.71 -3.42 16 2 C -0.13 -4.91 4.76 30.59 0.15 -4.76 16 3 C 0.20 8.84 1.41 44.17 0.06 8.91 16 4 H -0.01 -0.22 6.49 -2.39 -0.02 -0.24 16 5 C -0.50 -27.89 8.75 25.60 0.22 -27.67 16 6 H 0.03 1.74 8.06 -2.91 -0.02 1.71 16 7 C 0.01 0.78 5.35 84.65 0.45 1.23 16 8 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 9 Si 0.92 43.06 25.74 68.60 1.77 44.83 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.22 -8.99 5.41 99.48 0.54 -8.45 16 13 N -0.67 -24.04 5.08 -477.16 -2.42 -26.46 16 14 C 0.16 5.31 2.06 44.17 0.09 5.40 16 15 H 0.07 3.02 6.48 -2.39 -0.02 3.01 16 16 C -0.01 -0.36 3.39 -19.65 -0.07 -0.42 16 17 C -0.14 -3.68 8.24 22.36 0.18 -3.49 16 18 C 0.10 2.30 11.18 84.67 0.95 3.25 16 19 N -0.49 -13.06 10.36 -195.76 -2.03 -15.09 16 20 C 0.10 2.77 10.99 84.72 0.93 3.70 16 21 C -0.10 -2.97 4.90 22.42 0.11 -2.86 16 22 Cl -0.06 -1.81 27.54 -2.72 -0.07 -1.88 16 23 C -0.19 -5.10 5.77 -10.79 -0.06 -5.16 16 24 C -0.17 -3.80 9.66 30.62 0.30 -3.51 16 25 C -0.16 -3.28 9.28 30.62 0.28 -2.99 16 26 H 0.07 1.63 6.35 -2.38 -0.02 1.62 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.82 4.89 -2.39 -0.01 1.81 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 32 H 0.34 10.06 5.28 -89.69 -0.47 9.59 16 33 H 0.16 3.63 7.06 -2.91 -0.02 3.61 16 34 H 0.19 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.18 3.86 8.06 -2.91 -0.02 3.83 16 36 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 37 H 0.09 2.11 5.59 -2.39 -0.01 2.10 16 38 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.10 1.97 6.79 -2.39 -0.02 1.95 16 Total: -1.00 -67.22 328.13 2.26 -64.96 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.41 Total: 24.75 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 4.31 Total: -31.81 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -4.15 Total: -100.84 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.77 Total: 44.83 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.07 Total: -1.88 kcal Total: -67.22 2.26 -64.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161831.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.699 kcal (2) G-P(sol) polarization free energy of solvation -67.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds