Wall clock time and date at job start Tue Mar 31 2020 06:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47201 * 2 1 4 4 H 1.09002 * 109.46943 * 55.07863 * 3 2 1 5 5 C 1.50695 * 109.47213 * 175.08195 * 3 2 1 6 6 H 1.08003 * 119.99950 * 119.72226 * 5 3 2 7 7 C 1.37876 * 120.00123 * 299.99566 * 5 3 2 8 8 N 1.31513 * 119.99887 * 179.72299 * 7 5 3 9 9 Si 1.86799 * 119.99849 * 359.72902 * 7 5 3 10 10 H 1.48501 * 109.47271 * 89.99874 * 9 7 5 11 11 H 1.48497 * 109.47038 * 209.99691 * 9 7 5 12 12 H 1.48506 * 109.47123 * 329.99414 * 9 7 5 13 13 N 1.46902 * 109.46928 * 295.08272 * 3 2 1 14 14 C 1.46905 * 111.00208 * 152.50876 * 13 3 2 15 15 H 1.09002 * 109.46927 * 37.36417 * 14 13 3 16 16 C 1.50702 * 109.47075 * 157.36068 * 14 13 3 17 17 C 1.38650 * 120.79120 * 31.98240 * 16 14 13 18 18 C 1.38192 * 119.17372 * 179.72405 * 17 16 14 19 19 N 1.31887 * 120.79507 * 0.55935 * 18 17 16 20 20 C 1.31851 * 121.73315 * 359.71346 * 19 18 17 21 21 C 1.38345 * 120.74734 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.43070 * 179.97438 * 21 20 19 23 23 C 1.52991 * 109.47093 * 277.36817 * 14 13 3 24 24 C 1.53006 * 117.49483 * 244.35017 * 23 14 13 25 25 C 1.53006 * 117.49915 * 175.69602 * 23 14 13 26 26 H 1.09002 * 109.47171 * 305.83137 * 1 2 3 27 27 H 1.08998 * 109.46778 * 65.83137 * 1 2 3 28 28 H 1.09005 * 109.47258 * 185.82793 * 1 2 3 29 29 H 1.08991 * 109.47443 * 239.99522 * 2 1 3 30 30 H 1.09007 * 109.47148 * 119.99539 * 2 1 3 31 31 H 0.97005 * 119.99861 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00119 * 28.55629 * 13 3 2 33 33 H 1.08000 * 120.41375 * 359.97403 * 17 16 14 34 34 H 1.08001 * 119.60460 * 180.27255 * 18 17 16 35 35 H 1.07997 * 119.62049 * 179.97438 * 20 19 18 36 36 H 1.08994 * 115.55537 * 30.02378 * 23 14 13 37 37 H 1.08997 * 117.49859 * 0.02562 * 24 23 14 38 38 H 1.09007 * 117.49631 * 145.02201 * 24 23 14 39 39 H 1.09000 * 117.49996 * 214.97710 * 25 23 14 40 40 H 1.09000 * 117.49642 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9811 0.8426 5 6 3.5420 1.4442 0.1218 6 1 4.1465 1.8852 -0.6571 7 6 4.1449 0.8779 1.2249 8 7 5.4560 0.8746 1.3285 9 14 3.0995 0.1152 2.5720 10 1 2.8717 -1.3206 2.2687 11 1 3.8018 0.2405 3.8744 12 1 1.7939 0.8193 2.6439 13 7 1.6497 2.0998 -1.2544 14 6 1.5136 3.5507 -1.0684 15 1 2.2847 3.9030 -0.3832 16 6 1.6677 4.2442 -2.3974 17 6 1.2543 3.6309 -3.5702 18 6 1.4062 4.2997 -4.7699 19 7 1.9468 5.5020 -4.8089 20 6 2.3566 6.1140 -3.7153 21 6 2.2322 5.5090 -2.4774 22 17 2.7751 6.3220 -1.0428 23 6 0.1334 3.8631 -0.4870 24 6 -0.8277 4.6829 -1.3503 25 6 -0.1675 5.3188 -0.1243 26 1 -0.3633 0.6016 0.8332 27 1 -0.3633 0.4207 -0.9376 28 1 -0.3634 -1.0224 0.1044 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 5.8801 0.4758 2.1044 32 1 0.7988 1.7011 -1.6221 33 1 0.8153 2.6445 -3.5459 34 1 1.0825 3.8304 -5.6871 35 1 2.7949 7.0984 -3.7868 36 1 -0.2964 3.0874 0.1468 37 1 -0.4768 4.9993 -2.3325 38 1 -1.8898 4.4467 -1.2841 39 1 -0.7955 5.5007 0.7478 40 1 0.6181 6.0538 -0.2996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:10 Heat of formation + Delta-G solvation = 62.058369 kcal Electronic energy + Delta-G solvation = -22200.725216 eV Core-core repulsion = 19042.398988 eV Total energy + Delta-G solvation = -3158.326227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.50494 -38.10941 -36.50224 -35.90729 -33.16995 -32.05650 -30.93648 -30.83330 -27.54081 -25.54374 -23.43842 -22.87995 -22.46088 -22.16704 -20.19321 -19.66338 -16.87074 -16.73011 -16.55219 -16.14163 -15.78373 -14.87509 -14.66170 -14.28667 -13.92078 -13.78843 -13.61205 -13.02459 -12.59725 -12.53100 -12.32532 -12.14908 -11.82826 -11.75641 -11.50821 -11.27593 -11.02581 -10.85616 -10.63518 -10.41892 -10.33066 -10.04874 -9.88877 -9.53446 -9.42948 -9.28172 -9.19198 -8.81452 -8.55517 -7.56184 -6.06276 -4.03743 1.03727 1.28438 2.18030 3.22313 3.32307 3.35434 3.76508 3.87330 4.37424 4.47515 4.55991 4.78222 4.90621 4.98591 5.07358 5.10690 5.21263 5.28587 5.41632 5.60539 5.67520 5.70681 5.73884 5.75853 5.87297 5.97440 6.02126 6.05432 6.21100 6.27860 6.40545 6.44163 6.53957 6.61424 6.63819 6.74102 7.08326 7.66302 7.81245 7.90301 8.12476 8.68954 9.06505 9.55967 11.07067 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.005830 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.737787 B = 4801.617582 C = 5119.506532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.137 4.137 3 C 0.191 3.809 4 H 0.007 0.993 5 C -0.497 4.497 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.898 5.898 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.268 1.268 13 N -0.661 5.661 14 C 0.151 3.849 15 H 0.112 0.888 16 C 0.006 3.994 17 C -0.137 4.137 18 C 0.093 3.907 19 N -0.480 5.480 20 C 0.108 3.892 21 C -0.091 4.091 22 Cl -0.049 7.049 23 C -0.173 4.173 24 C -0.183 4.183 25 C -0.184 4.184 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.263 0.737 32 H 0.322 0.678 33 H 0.144 0.856 34 H 0.158 0.842 35 H 0.160 0.840 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.291 7.680 -6.820 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.175 4.175 3 C 0.083 3.917 4 H 0.024 0.976 5 C -0.536 4.536 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.537 5.537 9 Si 0.710 3.290 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.193 1.193 13 N -0.291 5.291 14 C 0.040 3.960 15 H 0.130 0.870 16 C -0.003 4.003 17 C -0.157 4.157 18 C -0.063 4.063 19 N -0.189 5.189 20 C -0.050 4.050 21 C -0.120 4.120 22 Cl -0.020 7.020 23 C -0.193 4.193 24 C -0.220 4.220 25 C -0.222 4.222 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.141 0.859 33 H 0.162 0.838 34 H 0.176 0.824 35 H 0.177 0.823 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.328 8.119 -7.619 15.884 hybrid contribution -1.301 -0.954 2.333 2.836 sum -12.629 7.165 -5.287 15.453 Atomic orbital electron populations 1.21931 0.98180 1.00675 1.00688 1.22148 0.92928 1.00409 1.02013 1.19650 0.96961 0.89111 0.85967 0.97583 1.21006 0.88866 1.37549 1.06133 0.90106 1.24944 0.94714 0.95948 0.97694 1.69884 1.08509 1.45548 1.29750 0.86984 0.80679 0.79770 0.81550 1.20605 1.22456 1.19286 1.60635 1.36773 1.00086 1.31588 1.20141 0.94808 0.90098 0.90975 0.86993 1.20245 0.91742 0.91107 0.97254 1.21979 1.00683 1.01346 0.91700 1.22813 0.94949 0.90602 0.97925 1.67769 1.10689 1.10409 1.30062 1.22645 0.96626 0.99812 0.85933 1.21993 1.04567 0.95648 0.89819 1.98368 1.87949 1.78178 1.37485 1.23193 0.97337 0.95281 1.03470 1.23050 0.97969 1.05091 0.95855 1.23201 1.03861 0.96409 0.98724 0.93585 0.93129 0.93539 0.91244 0.92669 0.92705 0.85901 0.83820 0.82429 0.82300 0.87343 0.89028 0.89278 0.89198 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.64 37.16 0.36 -2.13 16 2 C -0.14 -2.76 5.01 -26.73 -0.13 -2.90 16 3 C 0.19 4.20 1.38 -68.87 -0.10 4.11 16 4 H 0.01 0.15 6.39 -51.93 -0.33 -0.18 16 5 C -0.50 -13.56 9.20 -34.44 -0.32 -13.88 16 6 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 7 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 8 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 9 Si 0.88 21.42 24.42 -169.99 -4.15 17.26 16 10 H -0.28 -6.62 6.82 56.52 0.39 -6.23 16 11 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.27 -6.20 6.53 56.52 0.37 -5.83 16 13 N -0.66 -12.25 5.37 -102.17 -0.55 -12.80 16 14 C 0.15 2.57 2.09 -68.87 -0.14 2.43 16 15 H 0.11 2.27 6.54 -51.93 -0.34 1.93 16 16 C 0.01 0.09 3.07 -104.29 -0.32 -0.23 16 17 C -0.14 -1.85 8.62 -39.45 -0.34 -2.19 16 18 C 0.09 1.16 11.18 -17.55 -0.20 0.97 16 19 N -0.48 -6.63 10.36 -13.22 -0.14 -6.77 16 20 C 0.11 1.46 10.99 -17.50 -0.19 1.26 16 21 C -0.09 -1.34 6.05 -39.36 -0.24 -1.58 16 22 Cl -0.05 -0.71 24.77 -51.86 -1.28 -2.00 16 23 C -0.17 -2.53 5.41 -90.62 -0.49 -3.02 16 24 C -0.18 -2.28 9.62 -26.69 -0.26 -2.53 16 25 C -0.18 -2.45 10.03 -26.69 -0.27 -2.72 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.69 6.63 -51.93 -0.34 0.35 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.06 1.22 3.23 -51.93 -0.17 1.05 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.32 5.16 5.62 -39.29 -0.22 4.94 16 33 H 0.14 1.76 7.08 -52.49 -0.37 1.39 16 34 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.11 1.64 7.85 -51.93 -0.41 1.23 16 37 H 0.09 1.18 5.89 -51.93 -0.31 0.87 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.42 4.96 -51.93 -0.26 1.16 16 LS Contribution 324.46 15.07 4.89 4.89 Total: -1.00 -29.85 324.46 -8.50 -38.36 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -5.31 Total: 8.10 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -2.73 Total: -20.57 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.09 Total: -46.04 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.15 Total: 17.26 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.28 Total: -2.00 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.85 -8.50 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.414 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds