Wall clock time and date at job start Tue Mar 31 2020 06:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47201 * 2 1 4 4 H 1.09002 * 109.46943 * 55.07863 * 3 2 1 5 5 C 1.50695 * 109.47213 * 175.08195 * 3 2 1 6 6 H 1.08003 * 119.99950 * 119.72226 * 5 3 2 7 7 C 1.37876 * 120.00123 * 299.99566 * 5 3 2 8 8 N 1.31513 * 119.99887 * 179.72299 * 7 5 3 9 9 Si 1.86799 * 119.99849 * 359.72902 * 7 5 3 10 10 H 1.48501 * 109.47271 * 89.99874 * 9 7 5 11 11 H 1.48497 * 109.47038 * 209.99691 * 9 7 5 12 12 H 1.48506 * 109.47123 * 329.99414 * 9 7 5 13 13 N 1.46902 * 109.46928 * 295.08272 * 3 2 1 14 14 C 1.46905 * 111.00208 * 152.50876 * 13 3 2 15 15 H 1.09002 * 109.46927 * 37.36417 * 14 13 3 16 16 C 1.50702 * 109.47075 * 157.36068 * 14 13 3 17 17 C 1.38650 * 120.79120 * 31.98240 * 16 14 13 18 18 C 1.38192 * 119.17372 * 179.72405 * 17 16 14 19 19 N 1.31887 * 120.79507 * 0.55935 * 18 17 16 20 20 C 1.31851 * 121.73315 * 359.71346 * 19 18 17 21 21 C 1.38345 * 120.74734 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 120.43070 * 179.97438 * 21 20 19 23 23 C 1.52991 * 109.47093 * 277.36817 * 14 13 3 24 24 C 1.53006 * 117.49483 * 244.35017 * 23 14 13 25 25 C 1.53006 * 117.49915 * 175.69602 * 23 14 13 26 26 H 1.09002 * 109.47171 * 305.83137 * 1 2 3 27 27 H 1.08998 * 109.46778 * 65.83137 * 1 2 3 28 28 H 1.09005 * 109.47258 * 185.82793 * 1 2 3 29 29 H 1.08991 * 109.47443 * 239.99522 * 2 1 3 30 30 H 1.09007 * 109.47148 * 119.99539 * 2 1 3 31 31 H 0.97005 * 119.99861 * 180.02562 * 8 7 5 32 32 H 1.00900 * 111.00119 * 28.55629 * 13 3 2 33 33 H 1.08000 * 120.41375 * 359.97403 * 17 16 14 34 34 H 1.08001 * 119.60460 * 180.27255 * 18 17 16 35 35 H 1.07997 * 119.62049 * 179.97438 * 20 19 18 36 36 H 1.08994 * 115.55537 * 30.02378 * 23 14 13 37 37 H 1.08997 * 117.49859 * 0.02562 * 24 23 14 38 38 H 1.09007 * 117.49631 * 145.02201 * 24 23 14 39 39 H 1.09000 * 117.49996 * 214.97710 * 25 23 14 40 40 H 1.09000 * 117.49642 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9811 0.8426 5 6 3.5420 1.4442 0.1218 6 1 4.1465 1.8852 -0.6571 7 6 4.1449 0.8779 1.2249 8 7 5.4560 0.8746 1.3285 9 14 3.0995 0.1152 2.5720 10 1 2.8717 -1.3206 2.2687 11 1 3.8018 0.2405 3.8744 12 1 1.7939 0.8193 2.6439 13 7 1.6497 2.0998 -1.2544 14 6 1.5136 3.5507 -1.0684 15 1 2.2847 3.9030 -0.3832 16 6 1.6677 4.2442 -2.3974 17 6 1.2543 3.6309 -3.5702 18 6 1.4062 4.2997 -4.7699 19 7 1.9468 5.5020 -4.8089 20 6 2.3566 6.1140 -3.7153 21 6 2.2322 5.5090 -2.4774 22 17 2.7751 6.3220 -1.0428 23 6 0.1334 3.8631 -0.4870 24 6 -0.8277 4.6829 -1.3503 25 6 -0.1675 5.3188 -0.1243 26 1 -0.3633 0.6016 0.8332 27 1 -0.3633 0.4207 -0.9376 28 1 -0.3634 -1.0224 0.1044 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 5.8801 0.4758 2.1044 32 1 0.7988 1.7011 -1.6221 33 1 0.8153 2.6445 -3.5459 34 1 1.0825 3.8304 -5.6871 35 1 2.7949 7.0984 -3.7868 36 1 -0.2964 3.0874 0.1468 37 1 -0.4768 4.9993 -2.3325 38 1 -1.8898 4.4467 -1.2841 39 1 -0.7955 5.5007 0.7478 40 1 0.6181 6.0538 -0.2996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:09 Heat of formation + Delta-G solvation = 43.083808 kcal Electronic energy + Delta-G solvation = -22201.548014 eV Core-core repulsion = 19042.398988 eV Total energy + Delta-G solvation = -3159.149026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.61628 -39.35433 -37.67906 -37.32540 -34.57953 -33.94570 -32.15799 -31.97041 -29.26723 -26.97633 -24.62487 -24.19491 -23.82383 -23.19314 -21.76152 -20.99962 -18.78423 -18.03899 -17.74033 -17.27963 -16.84251 -16.66774 -16.02543 -15.54287 -15.43478 -14.83977 -14.82611 -14.66015 -14.12116 -13.98094 -13.66275 -13.39576 -13.31007 -12.93637 -12.71257 -12.63801 -12.48525 -12.32230 -12.14686 -11.95628 -11.78815 -11.48917 -11.23603 -11.14750 -10.99122 -10.68089 -10.51682 -10.35957 -9.90252 -9.09913 -8.25854 -6.27153 -0.02372 0.17609 1.06109 1.27932 1.33592 1.43085 2.31589 2.69918 2.78414 3.07135 3.32369 3.51156 3.63925 3.79167 3.88855 4.00295 4.04478 4.12315 4.27391 4.33240 4.38610 4.44490 4.53621 4.68509 4.74703 4.77729 4.84033 4.94036 4.98912 5.08640 5.11763 5.18785 5.19681 5.24273 5.30159 5.46272 5.58750 5.73442 6.05200 6.46122 6.79671 6.85833 6.93367 7.37011 8.91706 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.005830 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.737787 B = 4801.617582 C = 5119.506532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.201 3.799 4 H -0.001 1.001 5 C -0.495 4.495 6 H 0.029 0.971 7 C 0.008 3.992 8 N -0.952 5.952 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.304 1.304 12 H -0.246 1.246 13 N -0.666 5.666 14 C 0.156 3.844 15 H 0.070 0.930 16 C -0.010 4.010 17 C -0.140 4.140 18 C 0.100 3.900 19 N -0.490 5.490 20 C 0.108 3.892 21 C -0.105 4.105 22 Cl -0.057 7.057 23 C -0.186 4.186 24 C -0.157 4.157 25 C -0.189 4.189 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.263 0.737 32 H 0.341 0.659 33 H 0.158 0.842 34 H 0.194 0.806 35 H 0.179 0.821 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.663 7.282 -7.677 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.092 3.908 4 H 0.017 0.983 5 C -0.534 4.534 6 H 0.047 0.953 7 C -0.189 4.189 8 N -0.594 5.594 9 Si 0.773 3.227 10 H -0.191 1.191 11 H -0.232 1.232 12 H -0.170 1.170 13 N -0.297 5.297 14 C 0.045 3.955 15 H 0.088 0.912 16 C -0.019 4.019 17 C -0.160 4.160 18 C -0.056 4.056 19 N -0.200 5.200 20 C -0.050 4.050 21 C -0.134 4.134 22 Cl -0.029 7.029 23 C -0.206 4.206 24 C -0.194 4.194 25 C -0.226 4.226 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.175 0.825 34 H 0.210 0.790 35 H 0.196 0.804 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.122 0.878 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.738 7.734 -8.503 18.691 hybrid contribution -0.176 -0.747 2.463 2.580 sum -14.914 6.988 -6.040 17.542 Atomic orbital electron populations 1.21856 0.94185 1.02442 1.02139 1.22025 0.96460 0.98034 1.00965 1.19349 0.93245 0.90952 0.87283 0.98299 1.21290 0.91766 1.35919 1.04432 0.95271 1.25797 0.95776 0.96821 1.00472 1.70061 1.10754 1.47667 1.30872 0.85907 0.79539 0.79634 0.77630 1.19104 1.23172 1.17010 1.60409 1.38198 1.01140 1.29993 1.19910 0.95181 0.88926 0.91443 0.91183 1.20216 0.93065 0.91559 0.97095 1.22163 1.00621 1.01855 0.91342 1.23361 0.93421 0.89947 0.98832 1.67866 1.11061 1.11107 1.29928 1.22955 0.96113 1.00521 0.85372 1.22116 1.05305 0.95892 0.90084 1.98360 1.88134 1.78281 1.38076 1.22992 0.96531 0.96086 1.04952 1.23058 0.98509 1.02694 0.95113 1.23278 1.04085 0.95246 1.00022 0.93303 0.90819 0.91386 0.91689 0.94403 0.92829 0.83853 0.82478 0.78965 0.80420 0.87460 0.89305 0.87015 0.87823 0.88524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 9.64 71.98 0.69 -3.43 16 2 C -0.14 -5.26 5.01 30.59 0.15 -5.10 16 3 C 0.20 8.78 1.38 44.17 0.06 8.84 16 4 H 0.00 -0.02 6.39 -2.39 -0.02 -0.04 16 5 C -0.50 -28.10 9.20 25.60 0.24 -27.87 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 7 C 0.01 0.45 5.45 84.65 0.46 0.91 16 8 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 9 Si 0.95 44.68 24.42 68.60 1.68 46.36 16 10 H -0.26 -11.84 6.82 99.48 0.68 -11.16 16 11 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 12 H -0.25 -10.65 6.53 99.48 0.65 -10.00 16 13 N -0.67 -24.32 5.37 -477.16 -2.56 -26.88 16 14 C 0.16 5.31 2.09 44.17 0.09 5.40 16 15 H 0.07 2.97 6.54 -2.39 -0.02 2.95 16 16 C -0.01 -0.31 3.07 -19.65 -0.06 -0.37 16 17 C -0.14 -3.49 8.62 22.36 0.19 -3.30 16 18 C 0.10 2.24 11.18 84.67 0.95 3.18 16 19 N -0.49 -12.56 10.36 -195.74 -2.03 -14.59 16 20 C 0.11 2.80 10.99 84.72 0.93 3.73 16 21 C -0.10 -3.06 6.05 22.41 0.14 -2.93 16 22 Cl -0.06 -1.72 24.77 -2.72 -0.07 -1.79 16 23 C -0.19 -5.14 5.41 -10.79 -0.06 -5.20 16 24 C -0.16 -3.48 9.62 30.62 0.29 -3.18 16 25 C -0.19 -4.73 10.03 30.62 0.31 -4.42 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.69 6.63 -2.39 -0.02 1.68 16 28 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.04 1.58 3.23 -2.38 -0.01 1.58 16 31 H 0.26 15.68 8.31 -92.70 -0.77 14.91 16 32 H 0.34 10.14 5.62 -89.69 -0.50 9.63 16 33 H 0.16 3.42 7.08 -2.91 -0.02 3.40 16 34 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.18 3.75 8.06 -2.91 -0.02 3.72 16 36 H 0.11 3.00 7.85 -2.39 -0.02 2.98 16 37 H 0.09 2.05 5.89 -2.39 -0.01 2.04 16 38 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.10 2.58 4.96 -2.39 -0.01 2.57 16 Total: -1.00 -68.12 324.46 2.18 -65.94 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.47 Total: 24.79 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 4.39 Total: -33.74 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -4.29 Total: -101.56 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.68 Total: 46.36 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -0.07 Total: -1.79 kcal Total: -68.12 2.18 -65.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.021 kcal (2) G-P(sol) polarization free energy of solvation -68.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds