Wall clock time and date at job start Tue Mar 31 2020 06:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47211 * 2 1 4 4 H 1.09003 * 109.47140 * 305.43285 * 3 2 1 5 5 C 1.50698 * 109.47136 * 185.43604 * 3 2 1 6 6 H 1.08005 * 120.00357 * 240.00340 * 5 3 2 7 7 C 1.37881 * 120.00118 * 59.71752 * 5 3 2 8 8 N 1.31507 * 119.99934 * 0.28412 * 7 5 3 9 9 Si 1.86801 * 119.99887 * 180.27716 * 7 5 3 10 10 H 1.48497 * 109.47229 * 90.00722 * 9 7 5 11 11 H 1.48509 * 109.46957 * 210.00079 * 9 7 5 12 12 H 1.48489 * 109.47392 * 330.00222 * 9 7 5 13 13 N 1.46901 * 109.47572 * 65.43442 * 3 2 1 14 14 C 1.46896 * 110.99823 * 204.68516 * 13 3 2 15 15 H 1.08997 * 109.47648 * 327.64809 * 14 13 3 16 16 C 1.50703 * 109.46707 * 207.64863 * 14 13 3 17 17 C 1.38229 * 120.41800 * 319.72915 * 16 14 13 18 18 N 1.31844 * 120.79701 * 179.70194 * 17 16 14 19 19 C 1.31875 * 121.74028 * 0.58263 * 18 17 16 20 20 C 1.38313 * 120.74214 * 359.70595 * 19 18 17 21 21 Cl 1.73600 * 120.43193 * 179.97438 * 20 19 18 22 22 C 1.38610 * 120.41085 * 139.99871 * 16 14 13 23 23 C 1.52998 * 109.47039 * 87.65531 * 14 13 3 24 24 C 1.53004 * 117.49678 * 253.06741 * 23 14 13 25 25 C 1.53001 * 60.00302 * 252.51363 * 24 23 14 26 26 H 1.08999 * 109.47384 * 180.91752 * 1 2 3 27 27 H 1.08999 * 109.46623 * 300.91739 * 1 2 3 28 28 H 1.08999 * 109.46869 * 60.91314 * 1 2 3 29 29 H 1.08999 * 109.46843 * 239.99352 * 2 1 3 30 30 H 1.08999 * 109.46678 * 120.00103 * 2 1 3 31 31 H 0.96999 * 120.00580 * 180.02562 * 8 7 5 32 32 H 1.00896 * 110.99576 * 328.63482 * 13 3 2 33 33 H 1.08005 * 119.60045 * 359.97308 * 17 16 14 34 34 H 1.07997 * 119.63512 * 179.72508 * 19 18 17 35 35 H 1.08004 * 120.79601 * 359.97438 * 22 16 14 36 36 H 1.09000 * 115.55453 * 38.78350 * 23 14 13 37 37 H 1.09005 * 117.49590 * 0.02562 * 24 23 14 38 38 H 1.09004 * 117.49485 * 145.02073 * 24 23 14 39 39 H 1.09001 * 117.49713 * 252.50996 * 25 24 23 40 40 H 1.08992 * 117.51426 * 107.48358 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5995 1.9836 -0.8374 5 6 3.5410 1.4445 -0.1346 6 1 4.1520 1.8871 0.6383 7 6 4.1347 0.8762 -1.2417 8 7 3.3909 0.3373 -2.1828 9 14 5.9956 0.8720 -1.4048 10 1 6.5439 -0.3615 -0.7859 11 1 6.3666 0.9116 -2.8422 12 1 6.5556 2.0624 -0.7161 13 7 1.6605 2.0961 1.2596 14 6 1.5878 3.5540 1.0950 15 1 2.3242 3.8737 0.3577 16 6 1.8748 4.2233 2.4144 17 6 1.3662 3.7016 3.5891 18 7 1.6173 4.2777 4.7480 19 6 2.3479 5.3722 4.8349 20 6 2.8856 5.9551 3.7016 21 17 3.8455 7.3962 3.8252 22 6 2.6474 5.3730 2.4645 23 6 0.1871 3.9443 0.6192 24 6 0.0332 4.3849 -0.8380 25 6 -0.0614 5.4172 0.2874 26 1 -0.3634 -1.0275 0.0165 27 1 -0.3632 0.5280 0.8817 28 1 -0.3633 0.4996 -0.8981 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8085 -0.0628 -2.9615 32 1 0.7888 1.7279 1.6096 33 1 0.7593 2.8087 3.5575 34 1 2.5286 5.8184 5.8016 35 1 3.0547 5.8053 1.5625 36 1 -0.6343 3.3834 1.0652 37 1 0.9299 4.3962 -1.4577 38 1 -0.8895 4.1136 -1.3510 39 1 -1.0464 5.8251 0.5146 40 1 0.7729 6.1080 0.4084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:28 Heat of formation + Delta-G solvation = 45.687958 kcal Electronic energy + Delta-G solvation = -21720.045316 eV Core-core repulsion = 18561.009215 eV Total energy + Delta-G solvation = -3159.036101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.27343 -37.98785 -36.58227 -35.54472 -33.14428 -32.08007 -31.41599 -30.02791 -26.98381 -25.15529 -23.55392 -22.80089 -22.33787 -22.04962 -20.07775 -19.58154 -17.11736 -16.56852 -16.23566 -15.66650 -15.47247 -14.93203 -14.52675 -14.08737 -13.93874 -13.58023 -13.08400 -12.96723 -12.54560 -12.21706 -12.14295 -11.98789 -11.82247 -11.40226 -11.32525 -11.18812 -10.97447 -10.89842 -10.64820 -10.30664 -10.08773 -10.00318 -9.82541 -9.69520 -9.49506 -9.26596 -9.12476 -8.65794 -8.39343 -7.37196 -6.01430 -4.05638 1.08820 1.30896 2.04712 3.29579 3.36579 3.40365 3.81221 4.00232 4.40477 4.54420 4.69881 4.83737 4.98257 5.10446 5.13122 5.23179 5.28552 5.35945 5.52641 5.62988 5.78682 5.84099 5.95169 6.04125 6.11844 6.14309 6.14533 6.28808 6.35900 6.38079 6.57395 6.68298 6.80211 7.04641 7.10478 7.42749 7.72628 7.85523 7.97990 8.18732 8.32876 8.64667 9.02287 9.59738 11.03631 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.005327 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.339035 B = 5254.914695 C = 6181.570117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.010 0.990 5 C -0.496 4.496 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.674 5.674 14 C 0.163 3.837 15 H 0.097 0.903 16 C -0.077 4.077 17 C 0.122 3.878 18 N -0.472 5.472 19 C 0.095 3.905 20 C -0.087 4.087 21 Cl -0.068 7.068 22 C -0.067 4.067 23 C -0.172 4.172 24 C -0.167 4.167 25 C -0.181 4.181 26 H 0.036 0.964 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.259 0.741 32 H 0.320 0.680 33 H 0.160 0.840 34 H 0.157 0.843 35 H 0.140 0.860 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.882 10.035 7.407 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.115 3.885 4 H 0.028 0.972 5 C -0.534 4.534 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.305 5.305 14 C 0.051 3.949 15 H 0.115 0.885 16 C -0.080 4.080 17 C -0.035 4.035 18 N -0.180 5.180 19 C -0.062 4.062 20 C -0.116 4.116 21 Cl -0.040 7.040 22 C -0.093 4.093 23 C -0.192 4.192 24 C -0.203 4.203 25 C -0.219 4.219 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.139 0.861 33 H 0.177 0.823 34 H 0.175 0.825 35 H 0.158 0.842 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.458 9.672 8.244 13.831 hybrid contribution 0.667 0.482 -1.469 1.684 sum -4.791 10.154 6.775 13.113 Atomic orbital electron populations 1.21874 0.99571 0.99529 0.99663 1.21773 0.91239 1.00324 1.03151 1.19172 0.95293 0.89968 0.84107 0.97187 1.21204 0.91244 1.36593 1.04393 0.92199 1.24919 0.97932 0.95593 0.95845 1.69857 1.34645 1.39194 1.09704 0.86603 0.85997 0.78480 0.76961 1.20751 1.21415 1.20020 1.60847 1.35461 1.00375 1.33780 1.19970 0.93339 0.90292 0.91323 0.88502 1.21001 0.95422 0.93764 0.97811 1.22645 0.96258 0.97943 0.86661 1.67820 1.13415 1.08347 1.28456 1.22627 0.94133 0.92250 0.97233 1.22015 1.00728 0.92481 0.96393 1.98359 1.70440 1.36738 1.98424 1.21413 0.96455 0.94759 0.96718 1.23151 0.99181 0.97486 0.99397 1.22966 1.03410 1.02791 0.91179 1.22871 1.02358 0.92194 1.04507 0.94477 0.94699 0.93807 0.88171 0.94094 0.93059 0.86146 0.82307 0.82538 0.84174 0.88146 0.88261 0.89166 0.89378 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.76 37.16 0.36 -2.32 16 2 C -0.13 -2.80 5.36 -26.73 -0.14 -2.94 16 3 C 0.22 5.03 1.85 -68.87 -0.13 4.91 16 4 H 0.01 0.26 7.60 -51.93 -0.39 -0.14 16 5 C -0.50 -12.94 8.50 -34.44 -0.29 -13.24 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.54 5.29 -17.82 -0.09 1.44 16 8 N -0.89 -24.42 11.28 55.43 0.63 -23.80 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.67 -12.73 5.48 -102.18 -0.56 -13.29 16 14 C 0.16 2.69 2.19 -68.87 -0.15 2.54 16 15 H 0.10 1.85 7.29 -51.93 -0.38 1.47 16 16 C -0.08 -1.18 4.72 -104.49 -0.49 -1.67 16 17 C 0.12 1.83 10.49 -17.55 -0.18 1.65 16 18 N -0.47 -7.06 10.36 -13.22 -0.14 -7.20 16 19 C 0.10 1.27 10.99 -17.51 -0.19 1.08 16 20 C -0.09 -1.17 6.34 -39.35 -0.25 -1.42 16 21 Cl -0.07 -0.81 28.99 -51.86 -1.50 -2.31 16 22 C -0.07 -0.95 9.53 -39.24 -0.37 -1.33 16 23 C -0.17 -2.46 5.01 -90.61 -0.45 -2.92 16 24 C -0.17 -2.35 10.03 -26.73 -0.27 -2.62 16 25 C -0.18 -2.28 9.99 -26.73 -0.27 -2.55 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.55 6.42 -51.93 -0.33 0.22 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.10 2.54 5.93 -51.93 -0.31 2.23 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.32 5.45 5.58 -39.29 -0.22 5.23 16 33 H 0.16 2.22 7.37 -52.48 -0.39 1.84 16 34 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.14 1.87 8.06 -52.48 -0.42 1.45 16 36 H 0.10 1.37 7.96 -51.93 -0.41 0.96 16 37 H 0.10 1.55 8.08 -51.93 -0.42 1.13 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.13 8.04 -51.93 -0.42 0.71 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -26.91 344.22 -10.11 -37.02 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.77 Total: 7.75 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: -2.93 Total: -19.38 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.07 Total: -44.29 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -26.91 -10.11 -37.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.712 kcal (2) G-P(sol) polarization free energy of solvation -26.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds