Wall clock time and date at job start Tue Mar 31 2020 06:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47211 * 2 1 4 4 H 1.09003 * 109.47140 * 305.43285 * 3 2 1 5 5 C 1.50698 * 109.47136 * 185.43604 * 3 2 1 6 6 H 1.08005 * 120.00357 * 240.00340 * 5 3 2 7 7 C 1.37881 * 120.00118 * 59.71752 * 5 3 2 8 8 N 1.31507 * 119.99934 * 0.28412 * 7 5 3 9 9 Si 1.86801 * 119.99887 * 180.27716 * 7 5 3 10 10 H 1.48497 * 109.47229 * 90.00722 * 9 7 5 11 11 H 1.48509 * 109.46957 * 210.00079 * 9 7 5 12 12 H 1.48489 * 109.47392 * 330.00222 * 9 7 5 13 13 N 1.46901 * 109.47572 * 65.43442 * 3 2 1 14 14 C 1.46896 * 110.99823 * 204.68516 * 13 3 2 15 15 H 1.08997 * 109.47648 * 327.64809 * 14 13 3 16 16 C 1.50703 * 109.46707 * 207.64863 * 14 13 3 17 17 C 1.38229 * 120.41800 * 319.72915 * 16 14 13 18 18 N 1.31844 * 120.79701 * 179.70194 * 17 16 14 19 19 C 1.31875 * 121.74028 * 0.58263 * 18 17 16 20 20 C 1.38313 * 120.74214 * 359.70595 * 19 18 17 21 21 Cl 1.73600 * 120.43193 * 179.97438 * 20 19 18 22 22 C 1.38610 * 120.41085 * 139.99871 * 16 14 13 23 23 C 1.52998 * 109.47039 * 87.65531 * 14 13 3 24 24 C 1.53004 * 117.49678 * 253.06741 * 23 14 13 25 25 C 1.53001 * 60.00302 * 252.51363 * 24 23 14 26 26 H 1.08999 * 109.47384 * 180.91752 * 1 2 3 27 27 H 1.08999 * 109.46623 * 300.91739 * 1 2 3 28 28 H 1.08999 * 109.46869 * 60.91314 * 1 2 3 29 29 H 1.08999 * 109.46843 * 239.99352 * 2 1 3 30 30 H 1.08999 * 109.46678 * 120.00103 * 2 1 3 31 31 H 0.96999 * 120.00580 * 180.02562 * 8 7 5 32 32 H 1.00896 * 110.99576 * 328.63482 * 13 3 2 33 33 H 1.08005 * 119.60045 * 359.97308 * 17 16 14 34 34 H 1.07997 * 119.63512 * 179.72508 * 19 18 17 35 35 H 1.08004 * 120.79601 * 359.97438 * 22 16 14 36 36 H 1.09000 * 115.55453 * 38.78350 * 23 14 13 37 37 H 1.09005 * 117.49590 * 0.02562 * 24 23 14 38 38 H 1.09004 * 117.49485 * 145.02073 * 24 23 14 39 39 H 1.09001 * 117.49713 * 252.50996 * 25 24 23 40 40 H 1.08992 * 117.51426 * 107.48358 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5995 1.9836 -0.8374 5 6 3.5410 1.4445 -0.1346 6 1 4.1520 1.8871 0.6383 7 6 4.1347 0.8762 -1.2417 8 7 3.3909 0.3373 -2.1828 9 14 5.9956 0.8720 -1.4048 10 1 6.5439 -0.3615 -0.7859 11 1 6.3666 0.9116 -2.8422 12 1 6.5556 2.0624 -0.7161 13 7 1.6605 2.0961 1.2596 14 6 1.5878 3.5540 1.0950 15 1 2.3242 3.8737 0.3577 16 6 1.8748 4.2233 2.4144 17 6 1.3662 3.7016 3.5891 18 7 1.6173 4.2777 4.7480 19 6 2.3479 5.3722 4.8349 20 6 2.8856 5.9551 3.7016 21 17 3.8455 7.3962 3.8252 22 6 2.6474 5.3730 2.4645 23 6 0.1871 3.9443 0.6192 24 6 0.0332 4.3849 -0.8380 25 6 -0.0614 5.4172 0.2874 26 1 -0.3634 -1.0275 0.0165 27 1 -0.3632 0.5280 0.8817 28 1 -0.3633 0.4996 -0.8981 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8085 -0.0628 -2.9615 32 1 0.7888 1.7279 1.6096 33 1 0.7593 2.8087 3.5575 34 1 2.5286 5.8184 5.8016 35 1 3.0547 5.8053 1.5625 36 1 -0.6343 3.3834 1.0652 37 1 0.9299 4.3962 -1.4577 38 1 -0.8895 4.1136 -1.3510 39 1 -1.0464 5.8251 0.5146 40 1 0.7729 6.1080 0.4084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:27 Heat of formation + Delta-G solvation = 32.127192 kcal Electronic energy + Delta-G solvation = -21720.633355 eV Core-core repulsion = 18561.009215 eV Total energy + Delta-G solvation = -3159.624140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.41886 -39.26747 -37.59652 -37.09094 -34.58722 -33.70531 -32.76007 -31.37200 -28.70568 -26.65587 -24.77202 -24.37098 -23.53512 -23.15716 -21.45363 -21.19569 -18.32868 -18.19936 -17.64809 -16.82510 -16.76719 -16.63115 -15.98320 -15.33642 -15.27228 -14.94845 -14.69564 -14.16768 -13.97319 -13.63675 -13.50984 -13.27880 -13.04711 -12.98013 -12.75144 -12.57892 -12.51701 -12.37335 -12.10623 -11.98601 -11.61385 -11.48094 -11.39702 -11.16949 -10.90562 -10.59179 -10.44842 -10.40169 -9.77262 -8.97148 -8.04741 -6.15154 -0.01496 0.17727 1.00930 1.39023 1.41712 1.49917 2.43748 2.68886 2.89094 3.20496 3.40945 3.50593 3.76705 3.84614 3.93669 4.00070 4.10269 4.17040 4.30504 4.46970 4.56842 4.62554 4.64684 4.74615 4.77791 4.81675 4.92301 5.02409 5.16051 5.18765 5.25318 5.30946 5.34127 5.42365 5.55088 5.65997 5.79373 5.94537 6.39135 6.52696 6.87346 6.98649 7.01777 7.53510 8.97635 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.013110 B = 0.005327 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.339035 B = 5254.914695 C = 6181.570117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.233 3.767 4 H -0.015 1.015 5 C -0.508 4.508 6 H 0.044 0.956 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.943 3.057 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.275 1.275 13 N -0.676 5.676 14 C 0.171 3.829 15 H 0.064 0.936 16 C -0.088 4.088 17 C 0.117 3.883 18 N -0.484 5.484 19 C 0.098 3.902 20 C -0.087 4.087 21 Cl -0.052 7.052 22 C -0.073 4.073 23 C -0.179 4.179 24 C -0.178 4.178 25 C -0.158 4.158 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.259 0.741 32 H 0.332 0.668 33 H 0.166 0.834 34 H 0.184 0.816 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.588 11.060 8.820 15.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.125 3.875 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.062 0.938 7 C -0.183 4.183 8 N -0.556 5.556 9 Si 0.770 3.230 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.200 1.200 13 N -0.307 5.307 14 C 0.060 3.940 15 H 0.082 0.918 16 C -0.091 4.091 17 C -0.040 4.040 18 N -0.192 5.192 19 C -0.060 4.060 20 C -0.116 4.116 21 Cl -0.023 7.023 22 C -0.100 4.100 23 C -0.198 4.198 24 C -0.215 4.215 25 C -0.195 4.195 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.152 0.848 33 H 0.183 0.817 34 H 0.201 0.799 35 H 0.161 0.839 36 H 0.131 0.869 37 H 0.093 0.907 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.171 10.708 9.667 15.691 hybrid contribution 0.934 0.244 -1.863 2.098 sum -5.237 10.952 7.804 14.432 Atomic orbital electron populations 1.21734 0.96164 1.01001 1.00567 1.21604 0.94303 0.99209 1.01038 1.18846 0.93333 0.90448 0.84890 0.99702 1.21462 0.93166 1.36124 1.03910 0.93793 1.25527 1.01336 0.95604 0.95808 1.69972 1.35808 1.39798 1.09974 0.85791 0.82017 0.78274 0.76926 1.20565 1.20995 1.19987 1.60673 1.36478 1.01841 1.31729 1.19754 0.93985 0.88776 0.91512 0.91776 1.20837 0.96651 0.94450 0.97137 1.22736 0.96439 0.98222 0.86574 1.67866 1.14075 1.09056 1.28250 1.23083 0.92981 0.91571 0.98331 1.22036 1.00645 0.92945 0.95978 1.98367 1.69924 1.35663 1.98364 1.21523 0.96257 0.94702 0.97492 1.23053 0.98026 0.99333 0.99412 1.22936 1.02905 1.04445 0.91203 1.22925 1.03521 0.91073 1.02020 0.92795 0.92257 0.94298 0.91546 0.94832 0.93187 0.84790 0.81661 0.79874 0.83871 0.86853 0.90695 0.88002 0.87121 0.89016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.76 71.98 0.70 -4.07 16 2 C -0.12 -5.50 5.36 30.59 0.16 -5.33 16 3 C 0.23 10.82 1.85 44.17 0.08 10.90 16 4 H -0.01 -0.75 7.60 -2.39 -0.02 -0.77 16 5 C -0.51 -27.24 8.50 25.60 0.22 -27.02 16 6 H 0.04 2.44 7.81 -2.91 -0.02 2.42 16 7 C 0.02 0.85 5.29 84.66 0.45 1.30 16 8 N -0.92 -51.21 11.28 21.45 0.24 -50.97 16 9 Si 0.94 43.80 29.54 68.60 2.03 45.83 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 13 N -0.68 -25.56 5.48 -477.18 -2.61 -28.18 16 14 C 0.17 5.70 2.19 44.17 0.10 5.79 16 15 H 0.06 2.55 7.29 -2.39 -0.02 2.53 16 16 C -0.09 -2.63 4.72 -19.78 -0.09 -2.72 16 17 C 0.12 3.36 10.49 84.69 0.89 4.25 16 18 N -0.48 -13.57 10.36 -195.75 -2.03 -15.60 16 19 C 0.10 2.39 10.99 84.70 0.93 3.32 16 20 C -0.09 -2.17 6.34 22.42 0.14 -2.03 16 21 Cl -0.05 -1.12 28.99 -2.72 -0.08 -1.20 16 22 C -0.07 -2.02 9.53 22.49 0.21 -1.81 16 23 C -0.18 -4.94 5.01 -10.79 -0.05 -5.00 16 24 C -0.18 -4.98 10.03 30.60 0.31 -4.68 16 25 C -0.16 -3.71 9.99 30.60 0.31 -3.40 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 1.76 6.42 -2.39 -0.02 1.74 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 3.44 5.93 -2.39 -0.01 3.43 16 30 H 0.03 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.33 10.99 5.58 -89.70 -0.50 10.49 16 33 H 0.17 4.38 7.37 -2.91 -0.02 4.36 16 34 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 35 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.11 2.86 7.96 -2.39 -0.02 2.84 16 37 H 0.07 2.45 8.08 -2.38 -0.02 2.44 16 38 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.09 2.15 8.04 -2.39 -0.02 2.13 16 Total: -1.00 -58.25 344.22 2.44 -55.81 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.54 Total: 24.80 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 4.35 Total: -30.49 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -4.40 Total: -94.74 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -58.25 2.44 -55.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.940 kcal (2) G-P(sol) polarization free energy of solvation -58.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds