Wall clock time and date at job start Tue Mar 31 2020 06:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 H 1.08995 * 109.46986 * 177.50878 * 3 2 1 5 5 C 1.50694 * 109.47323 * 57.50158 * 3 2 1 6 6 H 1.08002 * 120.00049 * 240.00272 * 5 3 2 7 7 C 1.37877 * 119.99792 * 60.00538 * 5 3 2 8 8 N 1.31517 * 120.00243 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47341 * 59.99259 * 9 7 5 11 11 H 1.48496 * 109.47293 * 179.97438 * 9 7 5 12 12 H 1.48510 * 109.46850 * 299.99613 * 9 7 5 13 13 N 1.46904 * 109.47016 * 297.50251 * 3 2 1 14 14 C 1.46903 * 110.99951 * 274.60306 * 13 3 2 15 15 H 1.08996 * 109.47325 * 34.36032 * 14 13 3 16 16 C 1.50703 * 109.47088 * 154.35907 * 14 13 3 17 17 C 1.38235 * 120.41065 * 39.99518 * 16 14 13 18 18 N 1.31856 * 120.79277 * 180.02562 * 17 16 14 19 19 C 1.31875 * 121.73441 * 0.02562 * 18 17 16 20 20 C 1.38304 * 120.74848 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 120.43096 * 180.02562 * 20 19 18 22 22 C 1.38607 * 120.41245 * 220.01970 * 16 14 13 23 23 C 1.52993 * 109.46861 * 274.35600 * 14 13 3 24 24 C 1.53006 * 117.50198 * 248.62343 * 23 14 13 25 25 C 1.53005 * 117.49812 * 179.97438 * 23 14 13 26 26 H 1.09005 * 109.47158 * 174.58242 * 1 2 3 27 27 H 1.09004 * 109.47342 * 294.57708 * 1 2 3 28 28 H 1.08999 * 109.47256 * 54.57534 * 1 2 3 29 29 H 1.08996 * 109.47194 * 239.99680 * 2 1 3 30 30 H 1.09000 * 109.46792 * 119.99646 * 2 1 3 31 31 H 0.96997 * 119.99822 * 180.02562 * 8 7 5 32 32 H 1.00890 * 111.00185 * 150.64396 * 13 3 2 33 33 H 1.07997 * 119.60630 * 0.04562 * 17 16 14 34 34 H 1.08006 * 119.62301 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.79619 * 359.95946 * 22 16 14 36 36 H 1.09002 * 115.55260 * 34.33460 * 23 14 13 37 37 H 1.09001 * 117.49606 * 0.02562 * 24 23 14 38 38 H 1.08996 * 117.49806 * 145.02531 * 24 23 14 39 39 H 1.08993 * 117.49978 * 214.98216 * 25 23 14 40 40 H 1.08994 * 117.49470 * 0.02562 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4427 0.0447 5 6 1.4878 2.1705 1.1983 6 1 0.8717 3.0469 1.0610 7 6 1.7691 1.7179 2.4699 8 7 2.5189 0.6504 2.6370 9 14 1.0840 2.6200 3.9553 10 1 -0.3997 2.6190 3.8941 11 1 1.5282 1.9376 5.1971 12 1 1.5785 4.0203 3.9554 13 7 1.6002 2.1173 -1.2285 14 6 2.5353 1.8628 -2.3326 15 1 2.9413 0.8555 -2.2399 16 6 1.8085 1.9925 -3.6464 17 6 0.8741 2.9939 -3.8332 18 7 0.2334 3.1140 -4.9794 19 6 0.4539 2.2920 -5.9868 20 6 1.3743 1.2660 -5.8737 21 17 1.6585 0.1889 -7.2053 22 6 2.0683 1.1089 -4.6822 23 6 3.6769 2.8799 -2.2787 24 6 3.7460 3.9242 -3.3949 25 6 4.7626 2.7808 -3.3523 26 1 -0.3634 -1.0231 -0.0970 27 1 -0.3634 0.4274 0.9346 28 1 -0.3634 0.5957 -0.8374 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.7165 0.3318 3.5316 32 1 1.4830 3.1075 -1.0750 33 1 0.6665 3.6864 -3.0310 34 1 -0.0906 2.4215 -6.9105 35 1 2.7932 0.3171 -4.5648 36 1 3.9840 3.1894 -1.2797 37 1 2.9778 3.8868 -4.1673 38 1 4.0985 4.9210 -3.1302 39 1 5.7835 3.0258 -3.0597 40 1 4.6632 1.9912 -4.0971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255161960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:34 Heat of formation + Delta-G solvation = 49.033158 kcal Electronic energy + Delta-G solvation = -21765.594995 eV Core-core repulsion = 18606.703952 eV Total energy + Delta-G solvation = -3158.891043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.56475 -37.97191 -36.64934 -35.62259 -33.05400 -32.10728 -31.18046 -30.06578 -26.88254 -24.89287 -23.90190 -23.09318 -22.68488 -22.08150 -20.09142 -18.88148 -17.31615 -16.66634 -16.37257 -15.79314 -15.55091 -14.91889 -14.54961 -13.96427 -13.89434 -13.42559 -13.18858 -13.06039 -12.70952 -12.32278 -12.09277 -11.92632 -11.64108 -11.52181 -11.37311 -11.13545 -10.96253 -10.87937 -10.49991 -10.42479 -10.02615 -9.93120 -9.85503 -9.60584 -9.43463 -9.38795 -8.86832 -8.72755 -8.52394 -7.41335 -6.06968 -4.12449 0.98558 1.19662 1.95823 3.27766 3.33186 3.35691 3.72003 3.91389 4.36094 4.45219 4.71174 4.73669 4.86978 5.00593 5.07554 5.11533 5.25313 5.31865 5.46952 5.47417 5.72527 5.79762 5.91436 5.97608 6.05973 6.21772 6.27952 6.44949 6.47811 6.60311 6.66166 6.81338 7.18499 7.21364 7.43159 7.67402 7.72386 7.77607 7.89833 8.16637 8.28015 8.54481 8.94880 9.52572 10.98955 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.004219 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.182643 B = 6634.892263 C = 6973.122762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.218 3.782 4 H 0.006 0.994 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.673 5.673 14 C 0.156 3.844 15 H 0.089 0.911 16 C -0.083 4.083 17 C 0.127 3.873 18 N -0.471 5.471 19 C 0.097 3.903 20 C -0.088 4.088 21 Cl -0.067 7.067 22 C -0.071 4.071 23 C -0.169 4.169 24 C -0.183 4.183 25 C -0.179 4.179 26 H 0.012 0.988 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.008 0.992 30 H 0.086 0.914 31 H 0.261 0.739 32 H 0.335 0.665 33 H 0.164 0.836 34 H 0.158 0.842 35 H 0.140 0.860 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.360 1.930 -15.075 15.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.111 3.889 4 H 0.023 0.977 5 C -0.553 4.553 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.303 5.303 14 C 0.044 3.956 15 H 0.107 0.893 16 C -0.085 4.085 17 C -0.030 4.030 18 N -0.179 5.179 19 C -0.061 4.061 20 C -0.117 4.117 21 Cl -0.038 7.038 22 C -0.098 4.098 23 C -0.188 4.188 24 C -0.220 4.220 25 C -0.217 4.217 26 H 0.031 0.969 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.154 0.846 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.158 0.842 36 H 0.133 0.867 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.395 1.871 -15.289 15.408 hybrid contribution 1.101 0.100 1.117 1.572 sum 1.496 1.971 -14.172 14.387 Atomic orbital electron populations 1.21436 0.97468 0.97141 1.01582 1.21444 0.95143 0.98202 0.99267 1.19140 0.93652 0.91484 0.84580 0.97682 1.21097 1.31871 1.12066 0.90250 0.92304 1.24854 0.95015 0.94966 0.98804 1.69870 1.37374 1.23052 1.22323 0.86654 0.79532 0.79750 0.82032 1.20205 1.21387 1.20379 1.60824 1.46023 1.16218 1.07252 1.20001 0.88779 0.98266 0.88518 0.89332 1.20994 0.97107 0.94497 0.95950 1.22740 0.90437 0.95961 0.93909 1.67876 1.24066 1.25603 1.00384 1.22672 0.94977 0.90135 0.98292 1.22014 1.02131 0.96515 0.91037 1.98363 1.95567 1.63958 1.45933 1.21409 0.98451 0.99006 0.90897 1.23275 0.99105 1.00854 0.95612 1.23079 1.02537 0.94541 1.01832 1.22873 0.95159 1.01266 1.02386 0.96929 0.92856 0.93554 0.97288 0.89596 0.92875 0.84637 0.81916 0.82451 0.84192 0.86653 0.89010 0.89129 0.89069 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 9.45 37.16 0.35 -2.25 16 2 C -0.10 -2.34 5.55 -26.73 -0.15 -2.49 16 3 C 0.22 4.95 2.11 -68.87 -0.15 4.80 16 4 H 0.01 0.14 7.54 -51.93 -0.39 -0.25 16 5 C -0.51 -12.88 7.31 -34.44 -0.25 -13.14 16 6 H 0.06 1.47 7.61 -52.49 -0.40 1.07 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -24.04 11.34 55.43 0.63 -23.41 16 9 Si 0.89 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.67 -12.46 4.76 -102.18 -0.49 -12.94 16 14 C 0.16 2.45 2.40 -68.86 -0.17 2.28 16 15 H 0.09 1.50 7.02 -51.93 -0.36 1.14 16 16 C -0.08 -1.17 3.41 -104.49 -0.36 -1.52 16 17 C 0.13 1.81 8.74 -17.54 -0.15 1.66 16 18 N -0.47 -6.68 10.36 -13.22 -0.14 -6.82 16 19 C 0.10 1.21 10.99 -17.51 -0.19 1.01 16 20 C -0.09 -1.08 6.34 -39.36 -0.25 -1.33 16 21 Cl -0.07 -0.72 28.99 -51.86 -1.50 -2.23 16 22 C -0.07 -0.92 9.20 -39.25 -0.36 -1.28 16 23 C -0.17 -2.43 5.48 -90.62 -0.50 -2.93 16 24 C -0.18 -2.30 9.50 -26.70 -0.25 -2.56 16 25 C -0.18 -2.23 10.02 -26.70 -0.27 -2.50 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.05 1.26 7.35 -51.93 -0.38 0.87 16 28 H 0.05 0.98 7.52 -51.93 -0.39 0.59 16 29 H 0.01 0.18 7.44 -51.93 -0.39 -0.20 16 30 H 0.09 2.21 6.14 -51.93 -0.32 1.89 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.34 6.08 7.36 -39.30 -0.29 5.79 16 33 H 0.16 2.27 7.29 -52.49 -0.38 1.89 16 34 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 35 H 0.14 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.12 1.88 8.00 -51.93 -0.42 1.46 16 37 H 0.09 1.19 5.41 -51.93 -0.28 0.91 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.07 7.71 -51.93 -0.40 0.67 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -25.91 337.36 -9.87 -35.78 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.65 Total: 7.74 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -2.78 Total: -18.62 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.01 Total: -43.17 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -25.91 -9.87 -35.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.813 kcal (2) G-P(sol) polarization free energy of solvation -25.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds