Wall clock time and date at job start Tue Mar 31 2020 06:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 H 1.08995 * 109.46986 * 177.50878 * 3 2 1 5 5 C 1.50694 * 109.47323 * 57.50158 * 3 2 1 6 6 H 1.08002 * 120.00049 * 240.00272 * 5 3 2 7 7 C 1.37877 * 119.99792 * 60.00538 * 5 3 2 8 8 N 1.31517 * 120.00243 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99999 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47341 * 59.99259 * 9 7 5 11 11 H 1.48496 * 109.47293 * 179.97438 * 9 7 5 12 12 H 1.48510 * 109.46850 * 299.99613 * 9 7 5 13 13 N 1.46904 * 109.47016 * 297.50251 * 3 2 1 14 14 C 1.46903 * 110.99951 * 274.60306 * 13 3 2 15 15 H 1.08996 * 109.47325 * 34.36032 * 14 13 3 16 16 C 1.50703 * 109.47088 * 154.35907 * 14 13 3 17 17 C 1.38235 * 120.41065 * 39.99518 * 16 14 13 18 18 N 1.31856 * 120.79277 * 180.02562 * 17 16 14 19 19 C 1.31875 * 121.73441 * 0.02562 * 18 17 16 20 20 C 1.38304 * 120.74848 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 120.43096 * 180.02562 * 20 19 18 22 22 C 1.38607 * 120.41245 * 220.01970 * 16 14 13 23 23 C 1.52993 * 109.46861 * 274.35600 * 14 13 3 24 24 C 1.53006 * 117.50198 * 248.62343 * 23 14 13 25 25 C 1.53005 * 117.49812 * 179.97438 * 23 14 13 26 26 H 1.09005 * 109.47158 * 174.58242 * 1 2 3 27 27 H 1.09004 * 109.47342 * 294.57708 * 1 2 3 28 28 H 1.08999 * 109.47256 * 54.57534 * 1 2 3 29 29 H 1.08996 * 109.47194 * 239.99680 * 2 1 3 30 30 H 1.09000 * 109.46792 * 119.99646 * 2 1 3 31 31 H 0.96997 * 119.99822 * 180.02562 * 8 7 5 32 32 H 1.00890 * 111.00185 * 150.64396 * 13 3 2 33 33 H 1.07997 * 119.60630 * 0.04562 * 17 16 14 34 34 H 1.08006 * 119.62301 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.79619 * 359.95946 * 22 16 14 36 36 H 1.09002 * 115.55260 * 34.33460 * 23 14 13 37 37 H 1.09001 * 117.49606 * 0.02562 * 24 23 14 38 38 H 1.08996 * 117.49806 * 145.02531 * 24 23 14 39 39 H 1.08993 * 117.49978 * 214.98216 * 25 23 14 40 40 H 1.08994 * 117.49470 * 0.02562 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4427 0.0447 5 6 1.4878 2.1705 1.1983 6 1 0.8717 3.0469 1.0610 7 6 1.7691 1.7179 2.4699 8 7 2.5189 0.6504 2.6370 9 14 1.0840 2.6200 3.9553 10 1 -0.3997 2.6190 3.8941 11 1 1.5282 1.9376 5.1971 12 1 1.5785 4.0203 3.9554 13 7 1.6002 2.1173 -1.2285 14 6 2.5353 1.8628 -2.3326 15 1 2.9413 0.8555 -2.2399 16 6 1.8085 1.9925 -3.6464 17 6 0.8741 2.9939 -3.8332 18 7 0.2334 3.1140 -4.9794 19 6 0.4539 2.2920 -5.9868 20 6 1.3743 1.2660 -5.8737 21 17 1.6585 0.1889 -7.2053 22 6 2.0683 1.1089 -4.6822 23 6 3.6769 2.8799 -2.2787 24 6 3.7460 3.9242 -3.3949 25 6 4.7626 2.7808 -3.3523 26 1 -0.3634 -1.0231 -0.0970 27 1 -0.3634 0.4274 0.9346 28 1 -0.3634 0.5957 -0.8374 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.7165 0.3318 3.5316 32 1 1.4830 3.1075 -1.0750 33 1 0.6665 3.6864 -3.0310 34 1 -0.0906 2.4215 -6.9105 35 1 2.7932 0.3171 -4.5648 36 1 3.9840 3.1894 -1.2797 37 1 2.9778 3.8868 -4.1673 38 1 4.0985 4.9210 -3.1302 39 1 5.7835 3.0258 -3.0597 40 1 4.6632 1.9912 -4.0971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255161960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:33 Heat of formation + Delta-G solvation = 36.419611 kcal Electronic energy + Delta-G solvation = -21766.141960 eV Core-core repulsion = 18606.703952 eV Total energy + Delta-G solvation = -3159.438007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.64612 -39.18664 -37.58757 -37.20233 -34.50179 -33.46419 -32.63824 -31.47529 -28.54230 -26.41911 -25.26400 -24.58865 -23.78482 -23.09958 -21.52841 -20.44390 -18.67170 -17.95932 -17.59491 -17.02597 -16.75628 -16.68343 -15.77851 -15.49304 -15.04666 -14.84800 -14.68715 -14.21787 -14.16041 -13.83959 -13.45363 -13.25127 -13.01772 -12.77590 -12.62935 -12.61915 -12.39438 -12.35578 -12.15273 -12.06148 -11.63890 -11.33237 -11.28534 -11.04190 -10.76591 -10.66032 -10.51986 -10.44709 -9.76735 -8.98771 -8.06135 -6.16577 -0.04171 0.15478 1.00913 1.44547 1.46388 1.52346 2.44918 2.67114 2.83283 3.23810 3.44606 3.53315 3.75467 3.76845 3.89026 3.96825 4.03515 4.17302 4.24626 4.39895 4.66114 4.71639 4.73397 4.77401 4.82372 4.91470 4.97180 5.00898 5.16501 5.22639 5.27436 5.33481 5.43726 5.53423 5.59928 5.75165 5.83975 5.92332 6.31297 6.50765 6.79944 6.88132 7.06613 7.51838 8.98685 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.021236 B = 0.004219 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.182643 B = 6634.892263 C = 6973.122762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.229 3.771 4 H -0.025 1.025 5 C -0.520 4.520 6 H 0.058 0.942 7 C 0.021 3.979 8 N -0.915 5.915 9 Si 0.947 3.053 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.669 5.669 14 C 0.165 3.835 15 H 0.073 0.927 16 C -0.089 4.089 17 C 0.120 3.880 18 N -0.485 5.485 19 C 0.099 3.901 20 C -0.087 4.087 21 Cl -0.050 7.050 22 C -0.071 4.071 23 C -0.186 4.186 24 C -0.167 4.167 25 C -0.166 4.166 26 H 0.029 0.971 27 H 0.031 0.969 28 H 0.052 0.948 29 H 0.020 0.980 30 H 0.056 0.944 31 H 0.259 0.741 32 H 0.337 0.663 33 H 0.160 0.840 34 H 0.183 0.817 35 H 0.151 0.849 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.953 2.342 -16.888 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.121 3.879 4 H -0.008 1.008 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.178 4.178 8 N -0.554 5.554 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.198 1.198 13 N -0.298 5.298 14 C 0.053 3.947 15 H 0.091 0.909 16 C -0.092 4.092 17 C -0.036 4.036 18 N -0.193 5.193 19 C -0.059 4.059 20 C -0.115 4.115 21 Cl -0.021 7.021 22 C -0.098 4.098 23 C -0.206 4.206 24 C -0.204 4.204 25 C -0.204 4.204 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.155 0.845 33 H 0.178 0.822 34 H 0.200 0.800 35 H 0.168 0.832 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.014 2.297 -17.119 17.273 hybrid contribution 1.244 -0.058 1.558 1.995 sum 1.230 2.239 -15.561 15.769 Atomic orbital electron populations 1.21291 0.96375 0.98147 1.00551 1.21322 0.95966 0.98074 0.98295 1.18835 0.91586 0.91689 0.85802 1.00774 1.21397 1.31258 1.11943 0.91222 0.92408 1.25520 0.95436 0.95644 1.01229 1.70003 1.38636 1.24318 1.22492 0.85781 0.78849 0.78848 0.79137 1.19989 1.21548 1.19787 1.60698 1.46891 1.16017 1.06233 1.19843 0.88819 0.97743 0.88283 0.90922 1.20727 0.97632 0.95411 0.95380 1.22700 0.90672 0.96083 0.94188 1.67901 1.24399 1.26377 1.00651 1.23105 0.94671 0.89449 0.98627 1.22026 1.01656 0.96635 0.91220 1.98374 1.95453 1.63351 1.44940 1.21541 0.98595 0.98792 0.90875 1.23005 1.00176 1.02172 0.95279 1.23073 1.02302 0.94751 1.00296 1.22960 0.95197 1.01266 1.00969 0.95195 0.95018 0.92945 0.96178 0.92562 0.93191 0.84467 0.82247 0.79967 0.83170 0.89079 0.88968 0.88147 0.88033 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.61 9.45 71.98 0.68 -3.93 16 2 C -0.10 -4.55 5.55 30.59 0.17 -4.38 16 3 C 0.23 10.63 2.11 44.17 0.09 10.72 16 4 H -0.03 -1.31 7.54 -2.39 -0.02 -1.33 16 5 C -0.52 -26.45 7.31 25.60 0.19 -26.26 16 6 H 0.06 2.90 7.61 -2.91 -0.02 2.87 16 7 C 0.02 1.11 5.30 84.65 0.45 1.56 16 8 N -0.91 -50.74 11.34 21.45 0.24 -50.50 16 9 Si 0.95 42.25 29.54 68.60 2.03 44.28 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 N -0.67 -24.99 4.76 -477.17 -2.27 -27.26 16 14 C 0.16 5.15 2.40 44.17 0.11 5.26 16 15 H 0.07 2.49 7.02 -2.39 -0.02 2.47 16 16 C -0.09 -2.41 3.41 -19.78 -0.07 -2.47 16 17 C 0.12 3.30 8.74 84.69 0.74 4.04 16 18 N -0.48 -12.87 10.36 -195.74 -2.03 -14.89 16 19 C 0.10 2.21 10.99 84.70 0.93 3.15 16 20 C -0.09 -1.91 6.34 22.41 0.14 -1.77 16 21 Cl -0.05 -0.95 28.99 -2.72 -0.08 -1.03 16 22 C -0.07 -1.72 9.20 22.49 0.21 -1.51 16 23 C -0.19 -5.37 5.48 -10.79 -0.06 -5.43 16 24 C -0.17 -3.98 9.50 30.62 0.29 -3.69 16 25 C -0.17 -3.90 10.02 30.62 0.31 -3.59 16 26 H 0.03 1.15 8.14 -2.38 -0.02 1.14 16 27 H 0.03 1.48 7.35 -2.38 -0.02 1.46 16 28 H 0.05 2.18 7.52 -2.39 -0.02 2.16 16 29 H 0.02 0.86 7.44 -2.39 -0.02 0.84 16 30 H 0.06 2.97 6.14 -2.39 -0.01 2.96 16 31 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 32 H 0.34 12.38 7.36 -89.70 -0.66 11.72 16 33 H 0.16 4.37 7.29 -2.91 -0.02 4.35 16 34 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 35 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.09 3.08 8.00 -2.39 -0.02 3.06 16 37 H 0.09 2.23 5.41 -2.39 -0.01 2.22 16 38 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.10 2.14 7.71 -2.39 -0.02 2.12 16 Total: -1.00 -55.10 337.36 2.46 -52.65 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.39 Total: 25.08 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 4.18 Total: -28.31 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -4.06 Total: -92.66 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -55.10 2.46 -52.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255161960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.066 kcal (2) G-P(sol) polarization free energy of solvation -55.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds