Wall clock time and date at job start Tue Mar 31 2020 06:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47243 * 2 1 4 4 H 1.08998 * 109.47143 * 54.48613 * 3 2 1 5 5 C 1.50701 * 109.47488 * 174.48843 * 3 2 1 6 6 H 1.07998 * 120.00636 * 119.99650 * 5 3 2 7 7 C 1.37877 * 119.99555 * 300.00153 * 5 3 2 8 8 N 1.31517 * 120.00387 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99983 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47263 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47557 * 119.99832 * 9 7 5 12 12 H 1.48504 * 109.47295 * 239.99728 * 9 7 5 13 13 N 1.46905 * 109.46880 * 294.48456 * 3 2 1 14 14 C 1.46900 * 110.99841 * 153.17633 * 13 3 2 15 15 H 1.09007 * 109.47371 * 326.97055 * 14 13 3 16 16 C 1.50699 * 109.47483 * 206.97327 * 14 13 3 17 17 C 1.38610 * 120.42293 * 257.29571 * 16 14 13 18 18 C 1.38670 * 118.43971 * 179.97438 * 17 16 14 19 19 C 1.38194 * 119.18637 * 359.97438 * 18 17 16 20 20 N 1.31874 * 120.78396 * 359.97438 * 19 18 17 21 21 C 1.31981 * 121.70496 * 359.71371 * 20 19 18 22 22 Cl 1.73600 * 119.63256 * 180.28022 * 21 20 19 23 23 C 1.53002 * 109.47505 * 86.96877 * 14 13 3 24 24 C 1.52998 * 117.50151 * 253.27554 * 23 14 13 25 25 C 1.52997 * 117.49953 * 184.65003 * 23 14 13 26 26 H 1.09000 * 109.47105 * 185.94198 * 1 2 3 27 27 H 1.08995 * 109.46935 * 305.94530 * 1 2 3 28 28 H 1.09004 * 109.47037 * 65.94665 * 1 2 3 29 29 H 1.09005 * 109.47253 * 239.99823 * 2 1 3 30 30 H 1.08996 * 109.47263 * 120.00006 * 2 1 3 31 31 H 0.97000 * 120.00326 * 180.02562 * 8 7 5 32 32 H 1.00894 * 111.00227 * 29.22693 * 13 3 2 33 33 H 1.07999 * 120.78156 * 359.97405 * 17 16 14 34 34 H 1.07990 * 120.40598 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.60568 * 179.97438 * 19 18 17 36 36 H 1.09002 * 115.54753 * 38.97496 * 23 14 13 37 37 H 1.09010 * 117.49621 * 359.97438 * 24 23 14 38 38 H 1.08995 * 117.50142 * 145.01768 * 24 23 14 39 39 H 1.09007 * 117.49753 * 214.97476 * 25 23 14 40 40 H 1.08996 * 117.50109 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5983 1.9840 0.8365 5 6 3.5408 1.4447 0.1365 6 1 4.1527 1.8869 -0.6358 7 6 4.1328 0.8821 1.2473 8 7 3.3878 0.3439 2.1881 9 14 5.9931 0.8842 1.4163 10 1 6.5971 1.5448 0.2313 11 1 6.3778 1.6235 2.6454 12 1 6.4836 -0.5146 1.5062 13 7 1.6620 2.0954 -1.2605 14 6 1.5396 3.5487 -1.0845 15 1 1.1780 3.7638 -0.0789 16 6 0.5666 4.0972 -2.0961 17 6 1.0255 4.7595 -3.2240 18 6 0.0940 5.2470 -4.1282 19 6 -1.2517 5.0577 -3.8776 20 7 -1.6536 4.4217 -2.7944 21 6 -0.7958 3.9389 -1.9151 22 17 -1.3841 3.1043 -0.5112 23 6 2.9076 4.2039 -1.2853 24 6 3.6311 4.7244 -0.0418 25 6 3.0132 5.7097 -1.0360 26 1 -0.3633 -1.0221 0.1064 27 1 -0.3633 0.6032 0.8319 28 1 -0.3633 0.4189 -0.9385 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8042 -0.0516 2.9697 32 1 0.8090 1.7029 -1.6295 33 1 2.0836 4.8927 -3.3945 34 1 0.4164 5.7683 -5.0173 35 1 -1.9830 5.4350 -4.5771 36 1 3.5183 3.7818 -2.0835 37 1 3.1322 4.6005 0.9195 38 1 4.7180 4.6449 -0.0215 39 1 3.6937 6.2783 -1.6698 40 1 2.1080 6.2337 -0.7292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:37 Heat of formation + Delta-G solvation = 52.650398 kcal Electronic energy + Delta-G solvation = -22260.865143 eV Core-core repulsion = 19102.130956 eV Total energy + Delta-G solvation = -3158.734187 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.38881 -37.73574 -36.46796 -35.44697 -33.16013 -32.08449 -31.44741 -30.00801 -26.85636 -25.07306 -23.76237 -22.80531 -22.30856 -21.67753 -19.59428 -19.48091 -17.35195 -16.55498 -16.24772 -15.60535 -15.32471 -14.69045 -14.34858 -14.27191 -13.72436 -13.51830 -13.40894 -12.93280 -12.62757 -12.17800 -11.93179 -11.69106 -11.54331 -11.23500 -11.14853 -10.99015 -10.89514 -10.69615 -10.57462 -10.03539 -9.90029 -9.77084 -9.70252 -9.63999 -9.53026 -9.23425 -9.05049 -8.74559 -8.29918 -7.30317 -5.92123 -3.93899 0.95126 1.23000 1.99036 3.32107 3.40974 3.44286 3.66753 4.26460 4.46791 4.52733 4.75276 4.87689 4.98627 5.15402 5.23945 5.36318 5.42090 5.48274 5.76824 5.80118 5.94754 5.96964 6.02252 6.11873 6.21636 6.22877 6.44414 6.47282 6.50436 6.55791 6.65293 6.85533 6.89851 7.10590 7.19594 7.49697 7.72302 7.79878 7.96560 8.27363 8.41192 8.73807 9.13169 9.69609 11.13819 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.017752 B = 0.006180 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.936561 B = 4529.701528 C = 5588.475745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.223 3.777 4 H 0.005 0.995 5 C -0.477 4.477 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.670 5.670 14 C 0.165 3.835 15 H 0.058 0.942 16 C -0.103 4.103 17 C -0.043 4.043 18 C -0.174 4.174 19 C 0.103 3.897 20 N -0.481 5.481 21 C 0.168 3.832 22 Cl -0.024 7.024 23 C -0.114 4.114 24 C -0.147 4.147 25 C -0.204 4.204 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.100 0.900 31 H 0.257 0.743 32 H 0.320 0.680 33 H 0.148 0.852 34 H 0.139 0.861 35 H 0.160 0.840 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 9.592 -9.592 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.116 3.884 4 H 0.023 0.977 5 C -0.516 4.516 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.717 3.283 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.302 5.302 14 C 0.055 3.945 15 H 0.076 0.924 16 C -0.107 4.107 17 C -0.070 4.070 18 C -0.194 4.194 19 C -0.054 4.054 20 N -0.192 5.192 21 C 0.003 3.997 22 Cl 0.004 6.996 23 C -0.133 4.133 24 C -0.184 4.184 25 C -0.241 4.241 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.139 0.861 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.177 0.823 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.276 9.319 -9.353 14.619 hybrid contribution 0.943 -0.007 0.660 1.151 sum -5.334 9.311 -8.693 13.810 Atomic orbital electron populations 1.21893 0.99587 0.99554 0.99554 1.21797 0.91219 1.00481 1.03060 1.19250 0.95674 0.89758 0.83727 0.97745 1.21205 0.90942 1.35412 1.04011 0.91742 1.24918 0.97583 0.95990 0.96077 1.69879 1.34366 1.39985 1.09654 0.86594 0.86457 0.77500 0.77744 1.19864 1.21403 1.21384 1.60901 1.36835 0.99569 1.32861 1.19924 0.90168 0.90475 0.93947 0.92423 1.20970 0.92883 0.98805 0.98025 1.21623 1.01141 0.92980 0.91255 1.22230 0.94291 1.01913 1.00976 1.22579 0.94736 0.94936 0.93186 1.67004 1.39227 1.10049 1.02916 1.21678 0.89219 0.97273 0.91505 1.98434 1.89646 1.74941 1.36546 1.22039 0.97631 0.92526 1.01087 1.22768 0.99730 1.01282 0.94652 1.23056 1.02875 0.92878 1.05324 0.94526 0.94051 0.94601 0.94143 0.88156 0.93305 0.86136 0.83399 0.84343 0.82296 0.87463 0.88938 0.89303 0.89517 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.57 37.16 0.36 -2.57 16 2 C -0.13 -2.94 5.35 -26.73 -0.14 -3.08 16 3 C 0.22 5.25 2.03 -68.86 -0.14 5.11 16 4 H 0.00 0.13 7.37 -51.93 -0.38 -0.25 16 5 C -0.48 -12.27 7.58 -34.44 -0.26 -12.53 16 6 H 0.06 1.68 7.21 -52.49 -0.38 1.30 16 7 C 0.05 1.44 5.29 -17.82 -0.09 1.34 16 8 N -0.90 -24.94 11.29 55.43 0.63 -24.32 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.67 -13.53 6.16 -102.16 -0.63 -14.16 16 14 C 0.17 2.94 1.80 -68.86 -0.12 2.82 16 15 H 0.06 1.15 6.53 -51.92 -0.34 0.81 16 16 C -0.10 -1.60 4.94 -104.44 -0.52 -2.12 16 17 C -0.04 -0.55 8.77 -39.28 -0.34 -0.90 16 18 C -0.17 -1.83 10.11 -39.44 -0.40 -2.23 16 19 C 0.10 1.18 11.18 -17.55 -0.20 0.99 16 20 N -0.48 -7.16 10.34 -10.36 -0.11 -7.27 16 21 C 0.17 2.68 7.08 -17.45 -0.12 2.56 16 22 Cl -0.02 -0.40 26.98 -51.86 -1.40 -1.80 16 23 C -0.11 -1.90 2.57 -90.62 -0.23 -2.14 16 24 C -0.15 -2.53 9.65 -26.73 -0.26 -2.79 16 25 C -0.20 -2.86 9.10 -26.73 -0.24 -3.10 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.03 0.65 6.46 -51.93 -0.34 0.32 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.32 6.29 5.51 -39.30 -0.22 6.07 16 33 H 0.15 1.72 6.43 -52.49 -0.34 1.38 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.11 1.85 8.06 -51.93 -0.42 1.43 16 37 H 0.09 1.73 8.08 -51.92 -0.42 1.31 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -27.91 335.52 -9.85 -37.76 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.65 Total: 7.41 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -2.72 Total: -18.63 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.11 Total: -45.75 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.40 Total: -1.80 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.91 -9.85 -37.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.406 kcal (2) G-P(sol) polarization free energy of solvation -27.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds