Wall clock time and date at job start Tue Mar 31 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47243 * 2 1 4 4 H 1.08998 * 109.47143 * 54.48613 * 3 2 1 5 5 C 1.50701 * 109.47488 * 174.48843 * 3 2 1 6 6 H 1.07998 * 120.00636 * 119.99650 * 5 3 2 7 7 C 1.37877 * 119.99555 * 300.00153 * 5 3 2 8 8 N 1.31517 * 120.00387 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99983 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47263 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47557 * 119.99832 * 9 7 5 12 12 H 1.48504 * 109.47295 * 239.99728 * 9 7 5 13 13 N 1.46905 * 109.46880 * 294.48456 * 3 2 1 14 14 C 1.46900 * 110.99841 * 153.17633 * 13 3 2 15 15 H 1.09007 * 109.47371 * 326.97055 * 14 13 3 16 16 C 1.50699 * 109.47483 * 206.97327 * 14 13 3 17 17 C 1.38610 * 120.42293 * 257.29571 * 16 14 13 18 18 C 1.38670 * 118.43971 * 179.97438 * 17 16 14 19 19 C 1.38194 * 119.18637 * 359.97438 * 18 17 16 20 20 N 1.31874 * 120.78396 * 359.97438 * 19 18 17 21 21 C 1.31981 * 121.70496 * 359.71371 * 20 19 18 22 22 Cl 1.73600 * 119.63256 * 180.28022 * 21 20 19 23 23 C 1.53002 * 109.47505 * 86.96877 * 14 13 3 24 24 C 1.52998 * 117.50151 * 253.27554 * 23 14 13 25 25 C 1.52997 * 117.49953 * 184.65003 * 23 14 13 26 26 H 1.09000 * 109.47105 * 185.94198 * 1 2 3 27 27 H 1.08995 * 109.46935 * 305.94530 * 1 2 3 28 28 H 1.09004 * 109.47037 * 65.94665 * 1 2 3 29 29 H 1.09005 * 109.47253 * 239.99823 * 2 1 3 30 30 H 1.08996 * 109.47263 * 120.00006 * 2 1 3 31 31 H 0.97000 * 120.00326 * 180.02562 * 8 7 5 32 32 H 1.00894 * 111.00227 * 29.22693 * 13 3 2 33 33 H 1.07999 * 120.78156 * 359.97405 * 17 16 14 34 34 H 1.07990 * 120.40598 * 179.97438 * 18 17 16 35 35 H 1.08002 * 119.60568 * 179.97438 * 19 18 17 36 36 H 1.09002 * 115.54753 * 38.97496 * 23 14 13 37 37 H 1.09010 * 117.49621 * 359.97438 * 24 23 14 38 38 H 1.08995 * 117.50142 * 145.01768 * 24 23 14 39 39 H 1.09007 * 117.49753 * 214.97476 * 25 23 14 40 40 H 1.08996 * 117.50109 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5983 1.9840 0.8365 5 6 3.5408 1.4447 0.1365 6 1 4.1527 1.8869 -0.6358 7 6 4.1328 0.8821 1.2473 8 7 3.3878 0.3439 2.1881 9 14 5.9931 0.8842 1.4163 10 1 6.5971 1.5448 0.2313 11 1 6.3778 1.6235 2.6454 12 1 6.4836 -0.5146 1.5062 13 7 1.6620 2.0954 -1.2605 14 6 1.5396 3.5487 -1.0845 15 1 1.1780 3.7638 -0.0789 16 6 0.5666 4.0972 -2.0961 17 6 1.0255 4.7595 -3.2240 18 6 0.0940 5.2470 -4.1282 19 6 -1.2517 5.0577 -3.8776 20 7 -1.6536 4.4217 -2.7944 21 6 -0.7958 3.9389 -1.9151 22 17 -1.3841 3.1043 -0.5112 23 6 2.9076 4.2039 -1.2853 24 6 3.6311 4.7244 -0.0418 25 6 3.0132 5.7097 -1.0360 26 1 -0.3633 -1.0221 0.1064 27 1 -0.3633 0.6032 0.8319 28 1 -0.3633 0.4189 -0.9385 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8042 -0.0516 2.9697 32 1 0.8090 1.7029 -1.6295 33 1 2.0836 4.8927 -3.3945 34 1 0.4164 5.7683 -5.0173 35 1 -1.9830 5.4350 -4.5771 36 1 3.5183 3.7818 -2.0835 37 1 3.1322 4.6005 0.9195 38 1 4.7180 4.6449 -0.0215 39 1 3.6937 6.2783 -1.6698 40 1 2.1080 6.2337 -0.7292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162121.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:36 Heat of formation + Delta-G solvation = 36.757910 kcal Electronic energy + Delta-G solvation = -22261.554293 eV Core-core repulsion = 19102.130956 eV Total energy + Delta-G solvation = -3159.423337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.46874 -39.11212 -37.65465 -37.09337 -34.63259 -33.60289 -32.82497 -31.39582 -28.61910 -26.60870 -24.82792 -24.47713 -23.56688 -22.93352 -21.43705 -20.82943 -18.37771 -18.26919 -17.57315 -16.98702 -16.76307 -16.41443 -15.62118 -15.39084 -15.22053 -15.02005 -14.76482 -14.38717 -13.97378 -13.73432 -13.56043 -13.13150 -12.89456 -12.78291 -12.63708 -12.60672 -12.38382 -12.27760 -12.07876 -11.87942 -11.56329 -11.51311 -11.07747 -10.98844 -10.82963 -10.72341 -10.44974 -10.34076 -9.88324 -9.01946 -7.97337 -6.04765 -0.06387 0.23407 0.86205 1.41853 1.45388 1.55070 2.49187 2.66996 2.99894 3.28897 3.40574 3.63149 3.83979 3.89630 4.05100 4.17554 4.22201 4.38720 4.43292 4.48342 4.55267 4.61456 4.64997 4.73421 4.81653 4.87251 5.11670 5.12210 5.16772 5.23677 5.32891 5.37076 5.39415 5.44633 5.61552 5.64979 5.83480 5.94821 6.43298 6.53291 6.73370 6.94950 7.07533 7.61943 9.07246 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.017752 B = 0.006180 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.936561 B = 4529.701528 C = 5588.475745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.235 3.765 4 H -0.032 1.032 5 C -0.476 4.476 6 H 0.060 0.940 7 C 0.007 3.993 8 N -0.927 5.927 9 Si 0.944 3.056 10 H -0.265 1.265 11 H -0.288 1.288 12 H -0.288 1.288 13 N -0.667 5.667 14 C 0.172 3.828 15 H 0.028 0.972 16 C -0.120 4.120 17 C -0.045 4.045 18 C -0.152 4.152 19 C 0.106 3.894 20 N -0.504 5.504 21 C 0.149 3.851 22 Cl -0.049 7.049 23 C -0.123 4.123 24 C -0.174 4.174 25 C -0.159 4.159 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.255 0.745 32 H 0.322 0.678 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.199 0.801 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 11.534 -12.744 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C 0.127 3.873 4 H -0.015 1.015 5 C -0.515 4.515 6 H 0.078 0.922 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.772 3.228 10 H -0.189 1.189 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.298 5.298 14 C 0.061 3.939 15 H 0.046 0.954 16 C -0.124 4.124 17 C -0.072 4.072 18 C -0.171 4.171 19 C -0.052 4.052 20 N -0.215 5.215 21 C -0.014 4.014 22 Cl -0.020 7.020 23 C -0.142 4.142 24 C -0.211 4.211 25 C -0.196 4.196 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.141 0.859 33 H 0.180 0.820 34 H 0.202 0.798 35 H 0.216 0.784 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.094 11.272 -12.519 17.914 hybrid contribution 0.828 -0.518 1.523 1.809 sum -5.267 10.754 -10.996 16.257 Atomic orbital electron populations 1.21728 0.96954 1.00591 0.99908 1.21644 0.93581 0.99736 1.01245 1.18931 0.94457 0.89845 0.84036 1.01478 1.21403 0.92060 1.34439 1.03575 0.92172 1.25581 1.01255 0.96079 0.96041 1.70020 1.35758 1.41006 1.10080 0.85704 0.82134 0.77225 0.77753 1.18925 1.21483 1.21482 1.60812 1.37056 1.01320 1.30637 1.19758 0.91629 0.88908 0.93564 0.95438 1.20755 0.92018 1.00757 0.98849 1.21878 1.02468 0.92304 0.90503 1.22686 0.93198 0.99976 1.01285 1.23367 0.96420 0.93132 0.92251 1.67012 1.39489 1.11067 1.03939 1.21653 0.89554 0.98524 0.91659 1.98418 1.89876 1.75649 1.38091 1.21979 0.96783 0.94928 1.00497 1.22697 0.99511 1.04765 0.94115 1.23079 1.02695 0.91182 1.02653 0.92775 0.95001 0.93189 0.94462 0.91247 0.93604 0.85908 0.82003 0.79769 0.78442 0.87612 0.91751 0.89446 0.86242 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 9.57 71.98 0.69 -4.71 16 2 C -0.12 -5.91 5.35 30.59 0.16 -5.75 16 3 C 0.24 11.55 2.03 44.17 0.09 11.64 16 4 H -0.03 -1.81 7.37 -2.39 -0.02 -1.83 16 5 C -0.48 -25.19 7.58 25.60 0.19 -24.99 16 6 H 0.06 3.18 7.21 -2.91 -0.02 3.16 16 7 C 0.01 0.39 5.29 84.65 0.45 0.84 16 8 N -0.93 -53.48 11.29 21.45 0.24 -53.23 16 9 Si 0.94 43.84 29.54 68.60 2.03 45.86 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 N -0.67 -27.50 6.16 -477.14 -2.94 -30.44 16 14 C 0.17 6.20 1.80 44.17 0.08 6.28 16 15 H 0.03 1.17 6.53 -2.38 -0.02 1.15 16 16 C -0.12 -3.59 4.94 -19.75 -0.10 -3.69 16 17 C -0.05 -1.00 8.77 22.46 0.20 -0.80 16 18 C -0.15 -2.41 10.11 22.36 0.23 -2.19 16 19 C 0.11 1.98 11.18 84.68 0.95 2.92 16 20 N -0.50 -13.98 10.34 -186.69 -1.93 -15.91 16 21 C 0.15 4.68 7.08 84.70 0.60 5.28 16 22 Cl -0.05 -1.67 26.98 -2.72 -0.07 -1.74 16 23 C -0.12 -4.04 2.57 -10.79 -0.03 -4.07 16 24 C -0.17 -6.03 9.65 30.59 0.30 -5.73 16 25 C -0.16 -4.11 9.10 30.59 0.28 -3.83 16 26 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.05 1.84 6.46 -2.38 -0.02 1.83 16 29 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.07 3.78 5.94 -2.39 -0.01 3.77 16 31 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 32 H 0.32 12.85 5.51 -89.70 -0.49 12.36 16 33 H 0.16 3.10 6.43 -2.91 -0.02 3.08 16 34 H 0.19 1.29 8.06 -2.92 -0.02 1.27 16 35 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.11 3.52 8.06 -2.39 -0.02 3.50 16 37 H 0.06 2.57 8.08 -2.38 -0.02 2.55 16 38 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -63.80 335.52 1.96 -61.84 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.55 Total: 22.39 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: 4.08 Total: -28.78 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -4.63 Total: -99.58 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.07 Total: -1.74 kcal Total: -63.80 1.96 -61.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162121.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.597 kcal (2) G-P(sol) polarization free energy of solvation -63.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds