Wall clock time and date at job start Tue Mar 31 2020 06:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47115 * 2 1 4 4 H 1.08996 * 109.47292 * 55.59742 * 3 2 1 5 5 C 1.50701 * 109.47229 * 175.60005 * 3 2 1 6 6 H 1.08002 * 119.99741 * 119.99712 * 5 3 2 7 7 C 1.37869 * 120.00033 * 300.00537 * 5 3 2 8 8 N 1.31519 * 119.99983 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00032 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47183 * 89.99457 * 9 7 5 11 11 H 1.48500 * 109.46814 * 209.99439 * 9 7 5 12 12 H 1.48496 * 109.46808 * 329.99085 * 9 7 5 13 13 N 1.46905 * 109.47130 * 295.60202 * 3 2 1 14 14 C 1.46895 * 110.99993 * 153.66332 * 13 3 2 15 15 H 1.09002 * 109.47130 * 37.22496 * 14 13 3 16 16 C 1.50697 * 109.47068 * 157.22701 * 14 13 3 17 17 C 1.38231 * 119.60330 * 238.84318 * 16 14 13 18 18 C 1.38608 * 119.17593 * 179.79716 * 17 16 14 19 19 C 1.38782 * 118.41148 * 0.46872 * 18 17 16 20 20 Cl 1.73595 * 120.43491 * 179.77568 * 19 18 17 21 21 C 1.38316 * 119.13344 * 359.75553 * 19 18 17 22 22 N 1.31852 * 119.60499 * 59.12220 * 16 14 13 23 23 C 1.53000 * 109.47144 * 277.22419 * 14 13 3 24 24 C 1.52994 * 117.50130 * 242.94995 * 23 14 13 25 25 C 1.53000 * 60.00135 * 252.50902 * 24 23 14 26 26 H 1.09002 * 109.47692 * 55.32151 * 1 2 3 27 27 H 1.08997 * 109.47363 * 175.32226 * 1 2 3 28 28 H 1.09004 * 109.46915 * 295.31956 * 1 2 3 29 29 H 1.09002 * 109.46894 * 240.00174 * 2 1 3 30 30 H 1.08996 * 109.47481 * 120.00187 * 2 1 3 31 31 H 0.97000 * 119.99619 * 180.02562 * 8 7 5 32 32 H 1.00899 * 110.99955 * 277.61604 * 13 3 2 33 33 H 1.07999 * 120.41325 * 0.02562 * 17 16 14 34 34 H 1.08004 * 120.79820 * 180.20500 * 18 17 16 35 35 H 1.07998 * 119.62433 * 180.02562 * 21 19 18 36 36 H 1.08999 * 115.54982 * 28.66402 * 23 14 13 37 37 H 1.09004 * 117.50008 * 0.02562 * 24 23 14 38 38 H 1.09005 * 117.50136 * 145.02478 * 24 23 14 39 39 H 1.08996 * 117.50208 * 252.50564 * 25 24 23 40 40 H 1.09001 * 117.51503 * 107.47687 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6137 1.9786 0.8479 5 6 3.5431 1.4440 0.1090 6 1 4.1406 1.8912 -0.6716 7 6 4.1553 0.8742 1.2050 8 7 3.4275 0.3298 2.1557 9 14 6.0184 0.8766 1.3405 10 1 6.4620 2.1070 2.0436 11 1 6.4605 -0.3172 2.1051 12 1 6.6135 0.8416 -0.0195 13 7 1.6390 2.1037 -1.2490 14 6 1.5311 3.5570 -1.0643 15 1 2.3185 3.8972 -0.3916 16 6 1.6769 4.2450 -2.3971 17 6 2.6905 5.1665 -2.5826 18 6 2.8191 5.7909 -3.8134 19 6 1.9125 5.4708 -4.8141 20 17 2.0213 6.2256 -6.3736 21 6 0.9213 4.5421 -4.5529 22 7 0.8329 3.9649 -3.3705 23 6 0.1654 3.8947 -0.4628 24 6 -0.7815 4.7570 -1.2998 25 6 -0.0928 5.3505 -0.0692 26 1 -0.3634 0.5847 -0.8451 27 1 -0.3634 -1.0242 -0.0838 28 1 -0.3633 0.4395 0.9290 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8583 -0.0707 2.9270 32 1 2.2779 1.8808 -1.9975 33 1 3.3760 5.3943 -1.7797 34 1 3.6034 6.5125 -3.9881 35 1 0.2118 4.2868 -5.3261 36 1 -0.2786 3.1186 0.1605 37 1 -0.4317 5.0834 -2.2792 38 1 -1.8489 4.5482 -1.2274 39 1 -0.7070 5.5321 0.8127 40 1 0.7105 6.0676 -0.2385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:01 Heat of formation + Delta-G solvation = 54.828523 kcal Electronic energy + Delta-G solvation = -21712.894766 eV Core-core repulsion = 18554.255029 eV Total energy + Delta-G solvation = -3158.639737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57948 -37.61020 -36.58218 -35.47359 -32.67276 -32.45685 -31.50529 -30.13446 -26.93278 -24.96000 -23.75856 -22.73990 -22.55671 -21.89612 -19.87555 -19.12221 -17.03358 -16.69881 -16.52468 -15.79293 -15.62030 -14.75134 -14.36670 -13.91489 -13.67201 -13.44482 -13.25476 -13.01295 -12.68577 -12.45297 -12.09030 -11.66349 -11.54902 -11.36895 -11.19673 -11.09856 -11.04174 -10.84303 -10.65261 -10.20051 -9.97966 -9.73738 -9.63768 -9.56416 -9.53490 -9.28396 -9.04906 -8.78796 -8.39514 -7.28231 -6.02520 -4.15974 0.91205 1.16767 1.92940 3.23547 3.31787 3.33927 3.67942 4.18971 4.35662 4.37298 4.66918 4.70054 4.87831 5.06947 5.22350 5.27449 5.35204 5.46098 5.62038 5.75451 5.87280 5.92924 5.96079 6.12826 6.26994 6.35360 6.42543 6.45762 6.46960 6.57074 6.76014 6.79156 7.12460 7.23311 7.43771 7.57655 7.75755 7.97535 8.07441 8.10363 8.30622 8.61337 8.96429 9.51948 10.97370 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.004711 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.179408 B = 5942.194891 C = 6818.032167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.548 4.548 6 H 0.052 0.948 7 C 0.070 3.930 8 N -0.882 5.882 9 Si 0.886 3.114 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.666 5.666 14 C 0.171 3.829 15 H 0.067 0.933 16 C 0.147 3.853 17 C -0.155 4.155 18 C -0.069 4.069 19 C -0.099 4.099 20 Cl -0.068 7.068 21 C 0.108 3.892 22 N -0.431 5.431 23 C -0.114 4.114 24 C -0.175 4.175 25 C -0.195 4.195 26 H 0.054 0.946 27 H 0.023 0.977 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.089 0.911 31 H 0.261 0.739 32 H 0.330 0.670 33 H 0.144 0.856 34 H 0.141 0.859 35 H 0.161 0.839 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 10.941 -10.264 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C 0.106 3.894 4 H 0.054 0.946 5 C -0.587 4.587 6 H 0.070 0.930 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.296 5.296 14 C 0.060 3.940 15 H 0.085 0.915 16 C 0.010 3.990 17 C -0.176 4.176 18 C -0.095 4.095 19 C -0.128 4.128 20 Cl -0.039 7.039 21 C -0.051 4.051 22 N -0.140 5.140 23 C -0.133 4.133 24 C -0.212 4.212 25 C -0.233 4.233 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.159 0.841 35 H 0.178 0.822 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.546 10.162 -9.948 15.264 hybrid contribution 2.806 0.937 -0.130 2.961 sum -2.740 11.099 -10.078 15.240 Atomic orbital electron populations 1.21732 0.98942 0.98552 1.00471 1.21468 0.92174 0.99012 1.01597 1.19231 0.92626 0.91349 0.86148 0.94552 1.21847 0.92676 1.38386 1.05765 0.92994 1.24903 0.97807 0.94914 0.95662 1.69877 1.34849 1.37874 1.09437 0.86693 0.86215 0.77587 0.78077 1.20752 1.21130 1.20059 1.60891 1.55018 1.03656 1.09991 1.19901 0.95519 0.90549 0.88036 0.91528 1.21706 0.89354 0.92369 0.95568 1.22145 0.99896 0.97799 0.97742 1.21465 0.97528 0.98730 0.91813 1.22105 1.00949 1.01152 0.88560 1.98362 1.97897 1.81041 1.26623 1.22892 0.95569 0.91659 0.94981 1.67861 1.24724 1.22357 0.99018 1.22201 0.96317 0.92791 1.01957 1.23117 0.98060 1.04541 0.95446 1.22981 1.03685 0.97293 0.99292 0.92708 0.95762 0.94679 0.95159 0.89227 0.92847 0.85276 0.83837 0.84115 0.82162 0.86901 0.88713 0.89692 0.89245 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.48 16 2 C -0.10 -2.44 5.45 -26.73 -0.15 -2.58 16 3 C 0.21 5.04 1.75 -68.86 -0.12 4.92 16 4 H 0.04 0.94 7.37 -51.93 -0.38 0.56 16 5 C -0.55 -14.12 8.32 -34.44 -0.29 -14.40 16 6 H 0.05 1.33 7.72 -52.49 -0.41 0.93 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.21 11.30 55.43 0.63 -23.58 16 9 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.67 -13.45 5.38 -102.17 -0.55 -14.00 16 14 C 0.17 3.04 2.50 -68.87 -0.17 2.87 16 15 H 0.07 1.29 7.43 -51.93 -0.39 0.90 16 16 C 0.15 2.29 4.19 -82.59 -0.35 1.94 16 17 C -0.16 -2.08 9.71 -39.45 -0.38 -2.46 16 18 C -0.07 -0.80 9.98 -39.24 -0.39 -1.20 16 19 C -0.10 -1.16 6.34 -39.35 -0.25 -1.41 16 20 Cl -0.07 -0.70 28.99 -51.86 -1.50 -2.20 16 21 C 0.11 1.38 10.95 -17.50 -0.19 1.19 16 22 N -0.43 -6.57 7.84 -9.44 -0.07 -6.64 16 23 C -0.11 -1.91 5.62 -90.62 -0.51 -2.42 16 24 C -0.17 -2.59 9.30 -26.73 -0.25 -2.84 16 25 C -0.19 -2.80 10.13 -26.73 -0.27 -3.07 16 26 H 0.05 1.10 7.61 -51.93 -0.40 0.70 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 2.35 5.97 -51.93 -0.31 2.04 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.33 6.89 8.04 -39.29 -0.32 6.57 16 33 H 0.14 1.76 7.94 -52.49 -0.42 1.34 16 34 H 0.14 1.31 8.06 -52.48 -0.42 0.88 16 35 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.11 2.09 7.87 -51.93 -0.41 1.68 16 37 H 0.09 1.44 5.14 -51.93 -0.27 1.17 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -26.56 342.12 -10.21 -36.77 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -5.80 Total: 9.17 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -3.04 Total: -20.20 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.00 Total: -44.23 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -26.56 -10.21 -36.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.603 kcal (2) G-P(sol) polarization free energy of solvation -26.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds