Wall clock time and date at job start Tue Mar 31 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47115 * 2 1 4 4 H 1.08996 * 109.47292 * 55.59742 * 3 2 1 5 5 C 1.50701 * 109.47229 * 175.60005 * 3 2 1 6 6 H 1.08002 * 119.99741 * 119.99712 * 5 3 2 7 7 C 1.37869 * 120.00033 * 300.00537 * 5 3 2 8 8 N 1.31519 * 119.99983 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00032 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47183 * 89.99457 * 9 7 5 11 11 H 1.48500 * 109.46814 * 209.99439 * 9 7 5 12 12 H 1.48496 * 109.46808 * 329.99085 * 9 7 5 13 13 N 1.46905 * 109.47130 * 295.60202 * 3 2 1 14 14 C 1.46895 * 110.99993 * 153.66332 * 13 3 2 15 15 H 1.09002 * 109.47130 * 37.22496 * 14 13 3 16 16 C 1.50697 * 109.47068 * 157.22701 * 14 13 3 17 17 C 1.38231 * 119.60330 * 238.84318 * 16 14 13 18 18 C 1.38608 * 119.17593 * 179.79716 * 17 16 14 19 19 C 1.38782 * 118.41148 * 0.46872 * 18 17 16 20 20 Cl 1.73595 * 120.43491 * 179.77568 * 19 18 17 21 21 C 1.38316 * 119.13344 * 359.75553 * 19 18 17 22 22 N 1.31852 * 119.60499 * 59.12220 * 16 14 13 23 23 C 1.53000 * 109.47144 * 277.22419 * 14 13 3 24 24 C 1.52994 * 117.50130 * 242.94995 * 23 14 13 25 25 C 1.53000 * 60.00135 * 252.50902 * 24 23 14 26 26 H 1.09002 * 109.47692 * 55.32151 * 1 2 3 27 27 H 1.08997 * 109.47363 * 175.32226 * 1 2 3 28 28 H 1.09004 * 109.46915 * 295.31956 * 1 2 3 29 29 H 1.09002 * 109.46894 * 240.00174 * 2 1 3 30 30 H 1.08996 * 109.47481 * 120.00187 * 2 1 3 31 31 H 0.97000 * 119.99619 * 180.02562 * 8 7 5 32 32 H 1.00899 * 110.99955 * 277.61604 * 13 3 2 33 33 H 1.07999 * 120.41325 * 0.02562 * 17 16 14 34 34 H 1.08004 * 120.79820 * 180.20500 * 18 17 16 35 35 H 1.07998 * 119.62433 * 180.02562 * 21 19 18 36 36 H 1.08999 * 115.54982 * 28.66402 * 23 14 13 37 37 H 1.09004 * 117.50008 * 0.02562 * 24 23 14 38 38 H 1.09005 * 117.50136 * 145.02478 * 24 23 14 39 39 H 1.08996 * 117.50208 * 252.50564 * 25 24 23 40 40 H 1.09001 * 117.51503 * 107.47687 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6137 1.9786 0.8479 5 6 3.5431 1.4440 0.1090 6 1 4.1406 1.8912 -0.6716 7 6 4.1553 0.8742 1.2050 8 7 3.4275 0.3298 2.1557 9 14 6.0184 0.8766 1.3405 10 1 6.4620 2.1070 2.0436 11 1 6.4605 -0.3172 2.1051 12 1 6.6135 0.8416 -0.0195 13 7 1.6390 2.1037 -1.2490 14 6 1.5311 3.5570 -1.0643 15 1 2.3185 3.8972 -0.3916 16 6 1.6769 4.2450 -2.3971 17 6 2.6905 5.1665 -2.5826 18 6 2.8191 5.7909 -3.8134 19 6 1.9125 5.4708 -4.8141 20 17 2.0213 6.2256 -6.3736 21 6 0.9213 4.5421 -4.5529 22 7 0.8329 3.9649 -3.3705 23 6 0.1654 3.8947 -0.4628 24 6 -0.7815 4.7570 -1.2998 25 6 -0.0928 5.3505 -0.0692 26 1 -0.3634 0.5847 -0.8451 27 1 -0.3634 -1.0242 -0.0838 28 1 -0.3633 0.4395 0.9290 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8583 -0.0707 2.9270 32 1 2.2779 1.8808 -1.9975 33 1 3.3760 5.3943 -1.7797 34 1 3.6034 6.5125 -3.9881 35 1 0.2118 4.2868 -5.3261 36 1 -0.2786 3.1186 0.1605 37 1 -0.4317 5.0834 -2.2792 38 1 -1.8489 4.5482 -1.2274 39 1 -0.7070 5.5321 0.8127 40 1 0.7105 6.0676 -0.2385 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162381.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:00 Heat of formation + Delta-G solvation = 41.714055 kcal Electronic energy + Delta-G solvation = -21713.463452 eV Core-core repulsion = 18554.255029 eV Total energy + Delta-G solvation = -3159.208423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.67442 -38.90054 -37.55433 -37.09553 -34.34504 -33.47421 -33.19221 -31.51211 -28.65108 -26.53930 -24.81898 -24.35840 -23.88003 -23.05743 -21.49765 -20.63045 -18.64697 -17.99442 -17.61862 -17.15191 -16.90585 -16.50420 -15.58193 -15.36254 -15.05455 -14.87919 -14.58556 -14.25611 -14.17881 -13.77925 -13.25623 -13.24076 -13.08727 -12.92206 -12.85317 -12.62185 -12.42566 -12.21089 -12.16832 -11.90074 -11.47583 -11.41503 -11.23357 -11.00151 -10.76877 -10.74271 -10.42947 -10.37216 -9.83525 -9.00219 -8.02711 -6.24789 -0.12408 0.18683 1.00820 1.38605 1.41421 1.49488 2.41455 2.62306 2.96072 3.17318 3.24230 3.57302 3.71127 3.78050 3.97252 4.06169 4.17462 4.28963 4.36127 4.63205 4.65949 4.72381 4.79559 4.83514 4.84476 4.89483 4.97971 5.05600 5.09016 5.22827 5.30076 5.32828 5.46472 5.54552 5.56068 5.66896 5.81087 6.12637 6.21309 6.40598 6.79674 6.95788 7.02257 7.46637 8.93653 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.015490 B = 0.004711 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.179408 B = 5942.194891 C = 6818.032167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.101 4.101 3 C 0.225 3.775 4 H 0.007 0.993 5 C -0.557 4.557 6 H 0.049 0.951 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.659 5.659 14 C 0.176 3.824 15 H 0.044 0.956 16 C 0.130 3.870 17 C -0.160 4.160 18 C -0.061 4.061 19 C -0.093 4.093 20 Cl -0.049 7.049 21 C 0.104 3.896 22 N -0.452 5.452 23 C -0.139 4.139 24 C -0.160 4.160 25 C -0.179 4.179 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.030 0.970 29 H 0.024 0.976 30 H 0.061 0.939 31 H 0.261 0.739 32 H 0.325 0.675 33 H 0.150 0.850 34 H 0.169 0.831 35 H 0.181 0.819 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 12.480 -11.916 17.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 C 0.117 3.883 4 H 0.025 0.975 5 C -0.597 4.597 6 H 0.067 0.933 7 C -0.176 4.176 8 N -0.548 5.548 9 Si 0.773 3.227 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.288 5.288 14 C 0.065 3.935 15 H 0.061 0.939 16 C -0.007 4.007 17 C -0.180 4.180 18 C -0.087 4.087 19 C -0.122 4.122 20 Cl -0.020 7.020 21 C -0.055 4.055 22 N -0.162 5.162 23 C -0.158 4.158 24 C -0.197 4.197 25 C -0.217 4.217 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.168 0.832 34 H 0.186 0.814 35 H 0.198 0.802 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.120 0.880 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.297 11.715 -11.609 17.323 hybrid contribution 2.705 0.519 0.285 2.769 sum -2.592 12.234 -11.324 16.871 Atomic orbital electron populations 1.21565 0.96563 0.99741 1.00375 1.21342 0.94270 0.98535 0.99782 1.18941 0.91410 0.91346 0.86615 0.97485 1.22139 0.93936 1.37949 1.05627 0.93290 1.25600 1.01773 0.94773 0.95491 1.70006 1.36336 1.38610 1.09855 0.85745 0.81443 0.77546 0.78015 1.20209 1.21074 1.19683 1.60796 1.54186 1.05632 1.08139 1.19753 0.95347 0.88881 0.89527 0.93850 1.21318 0.90930 0.93703 0.94733 1.22215 0.99383 0.97564 0.98861 1.21736 0.97796 0.98426 0.90786 1.22163 1.00285 1.00456 0.89321 1.98375 1.97792 1.80571 1.25272 1.23209 0.96234 0.91564 0.94514 1.67751 1.25242 1.23337 0.99839 1.22052 0.96497 0.93774 1.03481 1.23104 0.98029 1.03046 0.95520 1.23052 1.03637 0.95351 0.99618 0.92349 0.93912 0.95073 0.95763 0.92050 0.92942 0.85830 0.83214 0.81383 0.80199 0.89292 0.88611 0.88821 0.87975 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.85 71.98 0.71 -4.44 16 2 C -0.10 -4.85 5.45 30.60 0.17 -4.69 16 3 C 0.23 11.02 1.75 44.17 0.08 11.09 16 4 H 0.01 0.39 7.37 -2.39 -0.02 0.37 16 5 C -0.56 -29.44 8.32 25.60 0.21 -29.23 16 6 H 0.05 2.56 7.72 -2.91 -0.02 2.53 16 7 C 0.02 1.28 5.29 84.65 0.45 1.73 16 8 N -0.91 -51.17 11.30 21.45 0.24 -50.93 16 9 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 13 N -0.66 -27.39 5.38 -477.15 -2.57 -29.96 16 14 C 0.18 6.40 2.50 44.17 0.11 6.51 16 15 H 0.04 1.76 7.43 -2.39 -0.02 1.74 16 16 C 0.13 3.97 4.19 42.55 0.18 4.15 16 17 C -0.16 -4.08 9.71 22.36 0.22 -3.86 16 18 C -0.06 -1.27 9.98 22.49 0.22 -1.05 16 19 C -0.09 -1.96 6.34 22.42 0.14 -1.81 16 20 Cl -0.05 -0.86 28.99 -2.72 -0.08 -0.94 16 21 C 0.10 2.44 10.95 84.70 0.93 3.37 16 22 N -0.45 -13.34 7.84 -183.79 -1.44 -14.78 16 23 C -0.14 -4.74 5.62 -10.80 -0.06 -4.80 16 24 C -0.16 -4.60 9.30 30.59 0.28 -4.31 16 25 C -0.18 -4.98 10.13 30.59 0.31 -4.67 16 26 H 0.06 2.35 7.61 -2.39 -0.02 2.33 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 3.32 5.97 -2.39 -0.01 3.31 16 31 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 32 H 0.33 13.89 8.04 -89.69 -0.72 13.17 16 33 H 0.15 3.54 7.94 -2.91 -0.02 3.52 16 34 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.18 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.09 3.44 7.87 -2.39 -0.02 3.42 16 37 H 0.10 2.77 5.14 -2.38 -0.01 2.76 16 38 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 39 H 0.10 2.56 8.14 -2.39 -0.02 2.55 16 40 H 0.09 2.43 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -57.53 342.12 2.45 -55.09 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.32 Total: 28.96 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 3.95 Total: -32.02 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -3.77 Total: -95.67 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -57.53 2.45 -55.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162381.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.799 kcal (2) G-P(sol) polarization free energy of solvation -57.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds