Wall clock time and date at job start Tue Mar 31 2020 06:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46974 * 2 1 4 4 H 1.08994 * 109.47234 * 304.56198 * 3 2 1 5 5 C 1.50706 * 109.46990 * 184.56726 * 3 2 1 6 6 H 1.08000 * 120.00069 * 245.47598 * 5 3 2 7 7 C 1.37874 * 119.99998 * 65.46957 * 5 3 2 8 8 N 1.31519 * 119.99791 * 9.20092 * 7 5 3 9 9 Si 1.86801 * 120.00232 * 189.19469 * 7 5 3 10 10 H 1.48498 * 109.47357 * 180.02562 * 9 7 5 11 11 H 1.48495 * 109.47359 * 300.00809 * 9 7 5 12 12 H 1.48499 * 109.46651 * 60.00483 * 9 7 5 13 13 N 1.46901 * 109.47178 * 64.56813 * 3 2 1 14 14 C 1.46898 * 110.99620 * 206.44083 * 13 3 2 15 15 H 1.09005 * 109.47270 * 315.20688 * 14 13 3 16 16 C 1.50703 * 109.47070 * 195.20876 * 14 13 3 17 17 C 1.38232 * 119.60012 * 359.66484 * 16 14 13 18 18 C 1.38613 * 119.17304 * 180.02562 * 17 16 14 19 19 C 1.38774 * 118.41020 * 359.97438 * 18 17 16 20 20 Cl 1.73607 * 120.43264 * 179.97438 * 19 18 17 21 21 C 1.38314 * 119.13991 * 0.02562 * 19 18 17 22 22 N 1.31850 * 119.60363 * 179.39608 * 16 14 13 23 23 C 1.53004 * 109.47606 * 75.20809 * 14 13 3 24 24 C 1.52997 * 117.49645 * 253.51326 * 23 14 13 25 25 C 1.52996 * 117.49996 * 184.85219 * 23 14 13 26 26 H 1.08999 * 109.47280 * 64.63444 * 1 2 3 27 27 H 1.08998 * 109.47228 * 184.63915 * 1 2 3 28 28 H 1.09001 * 109.46971 * 304.63737 * 1 2 3 29 29 H 1.08998 * 109.46918 * 239.99782 * 2 1 3 30 30 H 1.08998 * 109.47076 * 120.00182 * 2 1 3 31 31 H 0.96988 * 120.00339 * 356.84171 * 8 7 5 32 32 H 1.00896 * 111.00185 * 82.48596 * 13 3 2 33 33 H 1.07997 * 120.41716 * 359.97438 * 17 16 14 34 34 H 1.07999 * 120.79444 * 180.02562 * 18 17 16 35 35 H 1.07992 * 119.62935 * 179.97438 * 21 19 18 36 36 H 1.08993 * 115.54467 * 39.17837 * 23 14 13 37 37 H 1.09004 * 117.50124 * 359.97438 * 24 23 14 38 38 H 1.09002 * 117.49536 * 145.01744 * 24 23 14 39 39 H 1.09002 * 117.49874 * 214.97585 * 25 23 14 40 40 H 1.08997 * 117.50238 * 359.97422 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6115 1.9793 -0.8462 5 6 3.5428 1.4440 -0.1131 6 1 4.1456 1.8100 0.7048 7 6 4.1482 0.9779 -1.2609 8 7 3.4218 0.7026 -2.3221 9 14 6.0001 0.7378 -1.3086 10 1 6.3994 0.2322 -2.6466 11 1 6.6744 2.0350 -1.0487 12 1 6.3987 -0.2444 -0.2686 13 7 1.6425 2.1024 1.2508 14 6 1.5317 3.5556 1.0670 15 1 2.3915 3.9171 0.5028 16 6 1.4948 4.2309 2.4138 17 6 1.5568 3.4656 3.5632 18 6 1.5217 4.0958 4.7973 19 6 1.4255 5.4798 4.8293 20 17 1.3768 6.3231 6.3461 21 6 1.3678 6.1788 3.6372 22 7 1.4092 5.5449 2.4815 23 6 0.2471 3.8764 0.3003 24 6 0.3856 4.3073 -1.1612 25 6 0.0045 5.3350 -0.0927 26 1 -0.3634 0.4402 -0.9286 27 1 -0.3633 -1.0243 0.0831 28 1 -0.3633 0.5841 0.8455 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.4561 0.7835 -2.2832 32 1 2.2844 1.8801 1.9968 33 1 1.6309 2.3900 3.5007 34 1 1.5688 3.5235 5.7120 35 1 1.2925 7.2559 3.6529 36 1 -0.6223 3.2759 0.5678 37 1 1.3919 4.3626 -1.5764 38 1 -0.3930 3.9905 -1.8552 39 1 -1.0247 5.6940 -0.0842 40 1 0.7597 6.0662 0.1953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:07 Heat of formation + Delta-G solvation = 46.941177 kcal Electronic energy + Delta-G solvation = -21737.906633 eV Core-core repulsion = 18578.924875 eV Total energy + Delta-G solvation = -3158.981758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.42310 -37.78155 -36.64585 -35.60841 -33.07529 -32.43295 -31.51269 -30.10562 -26.78960 -24.84902 -23.67726 -22.81714 -22.41945 -21.82178 -20.01418 -19.53225 -17.36697 -16.96076 -16.51853 -15.70730 -15.28177 -14.72769 -14.38616 -14.00698 -13.78538 -13.71707 -13.28507 -12.97312 -12.50991 -12.41738 -12.20635 -11.87391 -11.74262 -11.52089 -11.27822 -11.05704 -10.96051 -10.74313 -10.44838 -10.16558 -10.02199 -9.90690 -9.84407 -9.74355 -9.60771 -9.26529 -9.00337 -8.72134 -8.31223 -7.45036 -6.38093 -4.15057 0.94220 1.18363 1.93398 3.38983 3.40324 3.58618 3.68022 4.15010 4.34514 4.47854 4.66224 4.74093 4.92655 5.07923 5.24945 5.30239 5.41262 5.56977 5.65542 5.67489 5.86319 5.98438 6.06443 6.11036 6.15275 6.22735 6.28508 6.39556 6.43379 6.50897 6.63953 6.75868 6.85976 6.90334 7.13168 7.29221 7.49325 7.83868 7.89612 8.00550 8.35122 8.50711 8.78544 9.57780 10.95945 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.004493 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.228887 B = 6230.485061 C = 6762.445768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C 0.202 3.798 4 H 0.039 0.961 5 C -0.631 4.631 6 H 0.046 0.954 7 C 0.030 3.970 8 N -0.904 5.904 9 Si 1.060 2.940 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.677 5.677 14 C 0.170 3.830 15 H 0.070 0.930 16 C 0.155 3.845 17 C -0.149 4.149 18 C -0.067 4.067 19 C -0.103 4.103 20 Cl -0.069 7.069 21 C 0.114 3.886 22 N -0.461 5.461 23 C -0.123 4.123 24 C -0.175 4.175 25 C -0.172 4.172 26 H 0.037 0.963 27 H 0.028 0.972 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.273 0.727 32 H 0.330 0.670 33 H 0.155 0.845 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 8.029 11.849 15.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.146 4.146 3 C 0.094 3.906 4 H 0.056 0.944 5 C -0.670 4.670 6 H 0.064 0.936 7 C -0.176 4.176 8 N -0.539 5.539 9 Si 0.888 3.112 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.309 5.309 14 C 0.059 3.941 15 H 0.087 0.913 16 C 0.018 3.982 17 C -0.169 4.169 18 C -0.093 4.093 19 C -0.132 4.132 20 Cl -0.040 7.040 21 C -0.045 4.045 22 N -0.170 5.170 23 C -0.142 4.142 24 C -0.212 4.212 25 C -0.210 4.210 26 H 0.056 0.944 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.149 0.851 33 H 0.173 0.827 34 H 0.159 0.841 35 H 0.177 0.823 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.391 8.003 10.103 13.971 hybrid contribution -0.211 0.208 1.991 2.013 sum -5.602 8.211 12.094 15.655 Atomic orbital electron populations 1.21728 0.98237 0.98951 1.00880 1.21547 0.92922 0.99390 1.00721 1.19294 0.93714 0.90538 0.87032 0.94351 1.22562 0.92165 1.47632 1.04623 0.93606 1.25631 1.06521 0.93528 0.91949 1.70797 1.08362 1.45776 1.28957 0.83671 0.74891 0.76489 0.76111 1.20748 1.21693 1.21452 1.60986 1.54729 1.04834 1.10309 1.19692 0.96446 0.89291 0.88680 0.91284 1.21596 0.91454 0.88991 0.96203 1.22148 1.00501 1.02901 0.91351 1.21529 0.96219 0.92308 0.99274 1.22052 1.09084 0.93814 0.88225 1.98359 1.97032 1.77790 1.30845 1.22730 0.95467 1.00498 0.85813 1.67605 1.12069 1.10389 1.26914 1.21962 0.98351 0.97145 0.96734 1.22989 1.02807 1.03652 0.91748 1.22958 1.01851 0.92733 1.03450 0.94379 0.95297 0.92521 0.92048 0.94009 0.91509 0.85078 0.82723 0.84065 0.82270 0.87984 0.88687 0.89453 0.89934 0.87778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.85 37.16 0.37 -2.27 16 2 C -0.11 -2.35 5.31 -26.73 -0.14 -2.49 16 3 C 0.20 4.59 1.42 -68.86 -0.10 4.50 16 4 H 0.04 0.96 5.87 -51.93 -0.30 0.65 16 5 C -0.63 -16.33 8.26 -34.44 -0.28 -16.62 16 6 H 0.05 1.20 7.70 -52.49 -0.40 0.80 16 7 C 0.03 0.81 5.17 -17.82 -0.09 0.72 16 8 N -0.90 -25.73 13.04 55.43 0.72 -25.00 16 9 Si 1.06 24.35 29.91 -169.99 -5.09 19.27 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.68 -12.86 4.81 -102.17 -0.49 -13.35 16 14 C 0.17 3.07 2.56 -68.86 -0.18 2.89 16 15 H 0.07 1.47 7.61 -51.93 -0.40 1.08 16 16 C 0.16 2.48 6.10 -82.59 -0.50 1.97 16 17 C -0.15 -2.08 9.09 -39.45 -0.36 -2.44 16 18 C -0.07 -0.81 9.98 -39.24 -0.39 -1.20 16 19 C -0.10 -1.24 6.34 -39.36 -0.25 -1.49 16 20 Cl -0.07 -0.72 28.99 -51.86 -1.50 -2.22 16 21 C 0.11 1.45 10.99 -17.50 -0.19 1.26 16 22 N -0.46 -7.01 8.43 -9.44 -0.08 -7.09 16 23 C -0.12 -2.08 4.73 -90.62 -0.43 -2.51 16 24 C -0.17 -2.94 9.35 -26.69 -0.25 -3.19 16 25 C -0.17 -2.62 9.42 -26.70 -0.25 -2.87 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 1.02 7.61 -51.93 -0.40 0.63 16 29 H 0.06 1.50 6.37 -51.93 -0.33 1.17 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.27 7.73 6.05 -40.82 -0.25 7.48 16 32 H 0.33 6.17 6.15 -39.29 -0.24 5.93 16 33 H 0.16 2.09 6.06 -52.49 -0.32 1.77 16 34 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.09 1.78 8.08 -51.93 -0.42 1.36 16 38 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.10 1.63 7.18 -51.93 -0.37 1.26 16 LS Contribution 338.72 15.07 5.10 5.10 Total: -1.00 -27.18 338.72 -9.99 -37.17 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.61 Total: 9.87 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -3.05 Total: -23.74 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.15 Total: -45.45 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.09 Total: 19.27 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.18 -9.99 -37.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.112 kcal (2) G-P(sol) polarization free energy of solvation -27.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds