Wall clock time and date at job start Tue Mar 31 2020 06:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.46974 * 2 1 4 4 H 1.08994 * 109.47234 * 304.56198 * 3 2 1 5 5 C 1.50706 * 109.46990 * 184.56726 * 3 2 1 6 6 H 1.08000 * 120.00069 * 245.47598 * 5 3 2 7 7 C 1.37874 * 119.99998 * 65.46957 * 5 3 2 8 8 N 1.31519 * 119.99791 * 9.20092 * 7 5 3 9 9 Si 1.86801 * 120.00232 * 189.19469 * 7 5 3 10 10 H 1.48498 * 109.47357 * 180.02562 * 9 7 5 11 11 H 1.48495 * 109.47359 * 300.00809 * 9 7 5 12 12 H 1.48499 * 109.46651 * 60.00483 * 9 7 5 13 13 N 1.46901 * 109.47178 * 64.56813 * 3 2 1 14 14 C 1.46898 * 110.99620 * 206.44083 * 13 3 2 15 15 H 1.09005 * 109.47270 * 315.20688 * 14 13 3 16 16 C 1.50703 * 109.47070 * 195.20876 * 14 13 3 17 17 C 1.38232 * 119.60012 * 359.66484 * 16 14 13 18 18 C 1.38613 * 119.17304 * 180.02562 * 17 16 14 19 19 C 1.38774 * 118.41020 * 359.97438 * 18 17 16 20 20 Cl 1.73607 * 120.43264 * 179.97438 * 19 18 17 21 21 C 1.38314 * 119.13991 * 0.02562 * 19 18 17 22 22 N 1.31850 * 119.60363 * 179.39608 * 16 14 13 23 23 C 1.53004 * 109.47606 * 75.20809 * 14 13 3 24 24 C 1.52997 * 117.49645 * 253.51326 * 23 14 13 25 25 C 1.52996 * 117.49996 * 184.85219 * 23 14 13 26 26 H 1.08999 * 109.47280 * 64.63444 * 1 2 3 27 27 H 1.08998 * 109.47228 * 184.63915 * 1 2 3 28 28 H 1.09001 * 109.46971 * 304.63737 * 1 2 3 29 29 H 1.08998 * 109.46918 * 239.99782 * 2 1 3 30 30 H 1.08998 * 109.47076 * 120.00182 * 2 1 3 31 31 H 0.96988 * 120.00339 * 356.84171 * 8 7 5 32 32 H 1.00896 * 111.00185 * 82.48596 * 13 3 2 33 33 H 1.07997 * 120.41716 * 359.97438 * 17 16 14 34 34 H 1.07999 * 120.79444 * 180.02562 * 18 17 16 35 35 H 1.07992 * 119.62935 * 179.97438 * 21 19 18 36 36 H 1.08993 * 115.54467 * 39.17837 * 23 14 13 37 37 H 1.09004 * 117.50124 * 359.97438 * 24 23 14 38 38 H 1.09002 * 117.49536 * 145.01744 * 24 23 14 39 39 H 1.09002 * 117.49874 * 214.97585 * 25 23 14 40 40 H 1.08997 * 117.50238 * 359.97422 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6115 1.9793 -0.8462 5 6 3.5428 1.4440 -0.1131 6 1 4.1456 1.8100 0.7048 7 6 4.1482 0.9779 -1.2609 8 7 3.4218 0.7026 -2.3221 9 14 6.0001 0.7378 -1.3086 10 1 6.3994 0.2322 -2.6466 11 1 6.6744 2.0350 -1.0487 12 1 6.3987 -0.2444 -0.2686 13 7 1.6425 2.1024 1.2508 14 6 1.5317 3.5556 1.0670 15 1 2.3915 3.9171 0.5028 16 6 1.4948 4.2309 2.4138 17 6 1.5568 3.4656 3.5632 18 6 1.5217 4.0958 4.7973 19 6 1.4255 5.4798 4.8293 20 17 1.3768 6.3231 6.3461 21 6 1.3678 6.1788 3.6372 22 7 1.4092 5.5449 2.4815 23 6 0.2471 3.8764 0.3003 24 6 0.3856 4.3073 -1.1612 25 6 0.0045 5.3350 -0.0927 26 1 -0.3634 0.4402 -0.9286 27 1 -0.3633 -1.0243 0.0831 28 1 -0.3633 0.5841 0.8455 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.4561 0.7835 -2.2832 32 1 2.2844 1.8801 1.9968 33 1 1.6309 2.3900 3.5007 34 1 1.5688 3.5235 5.7120 35 1 1.2925 7.2559 3.6529 36 1 -0.6223 3.2759 0.5678 37 1 1.3919 4.3626 -1.5764 38 1 -0.3930 3.9905 -1.8552 39 1 -1.0247 5.6940 -0.0842 40 1 0.7597 6.0662 0.1953 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:06 Heat of formation + Delta-G solvation = 33.444331 kcal Electronic energy + Delta-G solvation = -21738.491900 eV Core-core repulsion = 18578.924875 eV Total energy + Delta-G solvation = -3159.567025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.54784 -39.18076 -37.60352 -37.23159 -34.67276 -33.47767 -33.28219 -31.43355 -28.38973 -26.47975 -24.99342 -24.38235 -23.64295 -23.13863 -21.64080 -21.04191 -19.13975 -18.15981 -17.74605 -16.82612 -16.71117 -16.03469 -15.80765 -15.63150 -15.48096 -15.02481 -14.62951 -14.32873 -14.07125 -13.73980 -13.64686 -13.34992 -13.04368 -12.95781 -12.59796 -12.41904 -12.36678 -12.25477 -12.18576 -11.99219 -11.62912 -11.56896 -11.19734 -11.03163 -10.86658 -10.84905 -10.42408 -10.32626 -9.81637 -9.19942 -8.48971 -6.29058 -0.12407 0.17265 0.99341 1.51028 1.56498 1.75510 2.55831 2.59209 2.89531 3.03407 3.22757 3.60623 3.70968 3.75958 3.88777 4.02948 4.11207 4.24734 4.36587 4.45552 4.50889 4.59313 4.69538 4.77761 4.80397 4.81300 4.92234 4.97186 5.05099 5.08056 5.24722 5.26643 5.33940 5.43062 5.51229 5.54020 5.71807 5.98201 6.00501 6.48723 6.61002 6.73445 6.89284 7.50984 8.81528 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.004493 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.228887 B = 6230.485061 C = 6762.445768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 C 0.209 3.791 4 H 0.015 0.985 5 C -0.635 4.635 6 H 0.038 0.962 7 C -0.017 4.017 8 N -0.929 5.929 9 Si 1.101 2.899 10 H -0.286 1.286 11 H -0.281 1.281 12 H -0.271 1.271 13 N -0.660 5.660 14 C 0.178 3.822 15 H 0.026 0.974 16 C 0.133 3.867 17 C -0.154 4.154 18 C -0.059 4.059 19 C -0.098 4.098 20 Cl -0.048 7.048 21 C 0.110 3.890 22 N -0.479 5.479 23 C -0.130 4.130 24 C -0.187 4.187 25 C -0.144 4.144 26 H 0.032 0.968 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.333 0.667 33 H 0.157 0.843 34 H 0.170 0.830 35 H 0.184 0.816 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.569 8.739 14.290 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.140 4.140 3 C 0.100 3.900 4 H 0.032 0.968 5 C -0.674 4.674 6 H 0.057 0.943 7 C -0.218 4.218 8 N -0.566 5.566 9 Si 0.925 3.075 10 H -0.212 1.212 11 H -0.207 1.207 12 H -0.197 1.197 13 N -0.291 5.291 14 C 0.066 3.934 15 H 0.044 0.956 16 C -0.004 4.004 17 C -0.174 4.174 18 C -0.085 4.085 19 C -0.127 4.127 20 Cl -0.019 7.019 21 C -0.049 4.049 22 N -0.188 5.188 23 C -0.149 4.149 24 C -0.224 4.224 25 C -0.182 4.182 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.174 0.826 34 H 0.187 0.813 35 H 0.201 0.799 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.029 8.720 12.569 16.443 hybrid contribution -0.025 0.094 1.354 1.357 sum -6.054 8.815 13.922 17.555 Atomic orbital electron populations 1.21590 0.95498 1.00434 1.00995 1.21403 0.95314 0.98119 0.99181 1.19072 0.91868 0.91217 0.87828 0.96755 1.22909 0.94039 1.46422 1.04039 0.94336 1.26813 1.09832 0.93267 0.91881 1.70892 1.07935 1.47893 1.29865 0.83125 0.71004 0.77138 0.76271 1.21168 1.20700 1.19671 1.60931 1.54027 1.05599 1.08580 1.19478 0.95357 0.88396 0.90119 0.95611 1.21244 0.94010 0.89686 0.95433 1.22146 1.00773 1.02911 0.91564 1.21798 0.94733 0.92574 0.99443 1.22128 1.07616 0.93987 0.88922 1.98374 1.96830 1.77361 1.29352 1.23127 0.94768 1.01588 0.85402 1.67513 1.12728 1.10090 1.28461 1.21951 0.97891 0.98720 0.96376 1.22918 1.01644 1.05603 0.92247 1.22949 1.02931 0.91504 1.00799 0.94913 0.93229 0.91537 0.95084 0.93912 0.92612 0.84795 0.82578 0.81290 0.79910 0.87755 0.91586 0.88395 0.87493 0.88246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 9.85 71.98 0.71 -3.99 16 2 C -0.10 -4.50 5.31 30.60 0.16 -4.34 16 3 C 0.21 9.79 1.42 44.17 0.06 9.85 16 4 H 0.01 0.76 5.87 -2.39 -0.01 0.74 16 5 C -0.64 -33.80 8.26 25.60 0.21 -33.58 16 6 H 0.04 2.06 7.70 -2.91 -0.02 2.04 16 7 C -0.02 -0.95 5.17 84.65 0.44 -0.51 16 8 N -0.93 -54.68 13.04 21.45 0.28 -54.40 16 9 Si 1.10 49.66 29.91 68.60 2.05 51.71 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 13 N -0.66 -25.46 4.81 -477.15 -2.30 -27.75 16 14 C 0.18 6.58 2.56 44.17 0.11 6.70 16 15 H 0.03 1.18 7.61 -2.38 -0.02 1.16 16 16 C 0.13 4.20 6.10 42.56 0.26 4.46 16 17 C -0.15 -4.09 9.09 22.36 0.20 -3.89 16 18 C -0.06 -1.27 9.98 22.49 0.22 -1.04 16 19 C -0.10 -2.08 6.34 22.42 0.14 -1.93 16 20 Cl -0.05 -0.84 28.99 -2.72 -0.08 -0.92 16 21 C 0.11 2.57 10.99 84.70 0.93 3.50 16 22 N -0.48 -14.11 8.43 -183.79 -1.55 -15.66 16 23 C -0.13 -4.46 4.73 -10.79 -0.05 -4.52 16 24 C -0.19 -6.50 9.35 30.62 0.29 -6.21 16 25 C -0.14 -4.31 9.42 30.62 0.29 -4.02 16 26 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 2.30 7.61 -2.39 -0.02 2.29 16 29 H 0.03 1.55 6.37 -2.39 -0.02 1.54 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.26 15.58 6.05 -92.72 -0.56 15.02 16 32 H 0.33 12.51 6.15 -89.70 -0.55 11.96 16 33 H 0.16 4.02 6.06 -2.91 -0.02 4.01 16 34 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 36 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 37 H 0.07 2.66 8.08 -2.39 -0.02 2.64 16 38 H 0.10 3.13 8.14 -2.39 -0.02 3.12 16 39 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.10 3.09 7.18 -2.39 -0.02 3.07 16 Total: -1.00 -59.92 338.72 3.09 -56.83 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.70 Total: 29.72 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 3.98 Total: -39.53 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -3.56 Total: -97.81 kcal Atomic # 14 Polarization: 49.66 SS G_CDS: 2.05 Total: 51.71 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -59.92 3.09 -56.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.272 kcal (2) G-P(sol) polarization free energy of solvation -59.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds