Wall clock time and date at job start Tue Mar 31 2020 06:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46914 * 2 1 4 4 H 1.09007 * 109.47225 * 174.23530 * 3 2 1 5 5 C 1.50697 * 109.47206 * 54.23470 * 3 2 1 6 6 H 1.08003 * 120.00161 * 239.99734 * 5 3 2 7 7 C 1.37880 * 120.00091 * 60.00061 * 5 3 2 8 8 N 1.31516 * 119.99870 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99786 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47217 * 89.99802 * 9 7 5 11 11 H 1.48504 * 109.46485 * 209.99772 * 9 7 5 12 12 H 1.48492 * 109.47369 * 329.99572 * 9 7 5 13 13 N 1.46900 * 109.47274 * 294.23173 * 3 2 1 14 14 C 1.46904 * 111.00346 * 274.53971 * 13 3 2 15 15 H 1.09000 * 109.46750 * 35.59028 * 14 13 3 16 16 C 1.50696 * 109.47102 * 155.59053 * 14 13 3 17 17 N 1.31869 * 119.62714 * 44.98035 * 16 14 13 18 18 C 1.31856 * 121.73919 * 179.72043 * 17 16 14 19 19 C 1.38236 * 120.78951 * 0.58783 * 18 17 16 20 20 C 1.38599 * 119.17570 * 359.43026 * 19 18 17 21 21 C 1.38306 * 119.62738 * 224.99876 * 16 14 13 22 22 Cl 1.73598 * 120.43104 * 359.95935 * 21 16 14 23 23 C 1.52995 * 109.47080 * 275.59360 * 14 13 3 24 24 C 1.53005 * 117.50016 * 248.62182 * 23 14 13 25 25 C 1.52998 * 117.50207 * 179.97438 * 23 14 13 26 26 H 1.09000 * 109.47262 * 178.80526 * 1 2 3 27 27 H 1.09003 * 109.47115 * 298.80119 * 1 2 3 28 28 H 1.08995 * 109.47125 * 58.80325 * 1 2 3 29 29 H 1.08998 * 109.47077 * 240.00658 * 2 1 3 30 30 H 1.08998 * 109.47438 * 119.99938 * 2 1 3 31 31 H 0.96996 * 119.99676 * 180.02562 * 8 7 5 32 32 H 1.00902 * 110.99795 * 38.49126 * 13 3 2 33 33 H 1.07999 * 119.60728 * 180.31441 * 18 17 16 34 34 H 1.07998 * 120.41218 * 179.69934 * 19 18 17 35 35 H 1.07999 * 120.79684 * 180.29970 * 20 19 18 36 36 H 1.09003 * 115.55208 * 34.32855 * 23 14 13 37 37 H 1.09000 * 117.49199 * 359.97438 * 24 23 14 38 38 H 1.09000 * 117.50133 * 145.02036 * 24 23 14 39 39 H 1.08999 * 117.50307 * 214.98466 * 25 23 14 40 40 H 1.09000 * 117.49471 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1251 1.4443 0.1032 5 6 1.4245 2.1929 1.1528 6 1 0.8171 3.0663 0.9661 7 6 1.6367 1.7646 2.4461 8 7 2.3759 0.7009 2.6736 9 14 0.8731 2.6945 3.8751 10 1 -0.4681 2.1307 4.1723 11 1 1.7420 2.5625 5.0721 12 1 0.7387 4.1292 3.5168 13 7 1.6672 2.0937 -1.2629 14 6 2.6609 1.8200 -2.3097 15 1 3.0458 0.8074 -2.1894 16 6 2.0137 1.9539 -3.6640 17 7 1.2271 2.9829 -3.9118 18 6 0.6440 3.1439 -5.0835 19 6 0.8296 2.2241 -6.0986 20 6 1.6495 1.1289 -5.8765 21 6 2.2511 0.9959 -4.6329 22 17 3.2885 -0.3552 -4.2981 23 6 3.8126 2.8205 -2.1937 24 6 3.9620 3.8581 -3.3082 25 6 4.9572 2.7003 -3.2018 26 1 -0.3634 -1.0274 -0.0214 27 1 -0.3633 0.4951 0.9006 28 1 -0.3633 0.5323 -0.8790 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.5249 0.3994 3.5834 32 1 0.7446 1.8104 -1.5573 33 1 0.0104 4.0024 -5.2506 34 1 0.3451 2.3595 -7.0543 35 1 1.8166 0.3968 -6.6527 36 1 4.0658 3.1305 -1.1798 37 1 3.2400 3.8276 -4.1242 38 1 4.3134 4.8511 -3.0276 39 1 5.9630 2.9317 -2.8513 40 1 4.8899 1.9081 -3.9474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255162612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:16 Heat of formation + Delta-G solvation = 60.898414 kcal Electronic energy + Delta-G solvation = -22120.145223 eV Core-core repulsion = 18961.768696 eV Total energy + Delta-G solvation = -3158.376527 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.61341 -37.55625 -36.62808 -35.69099 -32.87523 -32.19647 -31.26719 -29.92048 -26.80198 -24.99333 -23.67856 -23.12093 -22.80486 -21.90770 -20.03295 -18.76419 -17.16741 -16.55687 -16.32761 -15.73033 -15.56095 -14.73212 -14.57440 -13.87703 -13.71453 -13.46164 -13.20581 -12.89950 -12.49722 -12.36547 -12.32608 -12.13885 -11.75961 -11.11234 -11.07232 -11.03076 -10.87533 -10.66261 -10.48221 -10.12200 -9.93103 -9.80779 -9.75202 -9.52926 -9.48876 -9.26412 -8.93772 -8.79240 -8.28301 -7.12174 -5.91435 -3.91974 0.88365 1.10467 2.03050 3.36773 3.43569 3.48676 3.65094 4.16691 4.32101 4.49885 4.59329 4.66650 4.86356 5.05008 5.24297 5.31217 5.36772 5.40528 5.52599 5.70793 5.84651 5.92565 5.95971 6.08933 6.20568 6.27785 6.39453 6.40012 6.43811 6.46468 6.61458 6.81366 6.95107 7.32618 7.33041 7.54449 7.75272 7.92720 8.00235 8.34795 8.60541 8.68419 9.14292 9.71255 11.15796 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.005015 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.643733 B = 5581.616626 C = 5663.973879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.036 0.964 5 C -0.483 4.483 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.659 5.659 14 C 0.159 3.841 15 H 0.066 0.934 16 C 0.157 3.843 17 N -0.433 5.433 18 C 0.099 3.901 19 C -0.173 4.173 20 C -0.070 4.070 21 C -0.092 4.092 22 Cl -0.051 7.051 23 C -0.112 4.112 24 C -0.175 4.175 25 C -0.195 4.195 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.010 0.990 30 H 0.093 0.907 31 H 0.258 0.742 32 H 0.330 0.670 33 H 0.161 0.839 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.156 0.354 -17.745 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.186 4.186 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.522 4.522 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.291 5.291 14 C 0.048 3.952 15 H 0.083 0.917 16 C 0.018 3.982 17 N -0.142 5.142 18 C -0.059 4.059 19 C -0.193 4.193 20 C -0.097 4.097 21 C -0.121 4.121 22 Cl -0.022 7.022 23 C -0.131 4.131 24 C -0.212 4.212 25 C -0.233 4.233 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.028 0.972 30 H 0.111 0.889 31 H 0.068 0.932 32 H 0.149 0.851 33 H 0.178 0.822 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.137 0.863 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.443 1.356 -16.707 16.768 hybrid contribution -0.413 -1.300 -0.168 1.374 sum 0.030 0.056 -16.875 16.875 Atomic orbital electron populations 1.21556 0.97773 0.97916 1.01164 1.22126 0.94955 1.01286 1.00216 1.19294 0.96229 0.88459 0.85308 0.94608 1.21049 1.30223 1.11424 0.89544 0.91941 1.24894 0.95623 0.95199 0.98625 1.69886 1.39341 1.24169 1.20281 0.86592 0.78916 0.80438 0.82031 1.20968 1.21528 1.19916 1.60784 1.02855 1.63045 1.02406 1.20087 0.92294 0.97311 0.85544 0.91664 1.21530 0.92525 0.88134 0.95992 1.67857 1.05963 1.19611 1.20765 1.23032 0.96234 0.98286 0.88321 1.22128 1.00339 0.95401 1.01436 1.21465 0.94921 0.98067 0.95242 1.22015 0.99970 0.93361 0.96785 1.98378 1.65302 1.43358 1.95172 1.22200 0.95266 0.99450 0.96168 1.22975 1.01994 0.94350 1.01856 1.23030 0.95219 1.01462 1.03581 0.95977 0.91444 0.95426 0.97152 0.88859 0.93219 0.85059 0.82168 0.84244 0.84114 0.86313 0.89435 0.89381 0.89083 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.39 37.16 0.35 -2.42 16 2 C -0.15 -3.45 5.48 -26.73 -0.15 -3.59 16 3 C 0.21 5.27 2.13 -68.86 -0.15 5.12 16 4 H 0.04 0.97 7.43 -51.92 -0.39 0.58 16 5 C -0.48 -13.05 7.35 -34.44 -0.25 -13.31 16 6 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 7 C 0.06 1.55 5.23 -17.82 -0.09 1.46 16 8 N -0.90 -25.24 11.38 55.43 0.63 -24.61 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 13 N -0.66 -14.21 5.87 -102.17 -0.60 -14.81 16 14 C 0.16 2.95 2.32 -68.87 -0.16 2.79 16 15 H 0.07 1.27 5.35 -51.93 -0.28 0.99 16 16 C 0.16 2.53 3.74 -82.55 -0.31 2.22 16 17 N -0.43 -6.78 8.51 -9.45 -0.08 -6.86 16 18 C 0.10 1.16 11.18 -17.54 -0.20 0.97 16 19 C -0.17 -1.68 10.11 -39.45 -0.40 -2.08 16 20 C -0.07 -0.77 9.98 -39.25 -0.39 -1.16 16 21 C -0.09 -1.28 6.22 -39.35 -0.24 -1.52 16 22 Cl -0.05 -0.70 26.42 -51.86 -1.37 -2.07 16 23 C -0.11 -2.00 5.71 -90.62 -0.52 -2.52 16 24 C -0.17 -2.74 9.57 -26.70 -0.26 -3.00 16 25 C -0.20 -2.93 10.02 -26.71 -0.27 -3.20 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 1.60 7.05 -51.93 -0.37 1.24 16 28 H 0.03 0.56 6.42 -51.93 -0.33 0.22 16 29 H 0.01 0.22 7.40 -51.93 -0.38 -0.16 16 30 H 0.09 2.46 6.25 -51.93 -0.32 2.13 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.33 7.10 6.17 -39.29 -0.24 6.86 16 33 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 36 H 0.12 2.38 7.90 -51.93 -0.41 1.97 16 37 H 0.09 1.39 5.56 -51.93 -0.29 1.10 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.09 1.26 7.33 -51.93 -0.38 0.88 16 LS Contribution 333.05 15.07 5.02 5.02 Total: -1.00 -28.62 333.05 -9.93 -38.54 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.47 Total: 8.57 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -3.03 Total: -20.25 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.05 Total: -46.28 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.37 Total: -2.07 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.62 -9.93 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.443 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds