Wall clock time and date at job start Tue Mar 31 2020 06:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46914 * 2 1 4 4 H 1.09007 * 109.47225 * 174.23530 * 3 2 1 5 5 C 1.50697 * 109.47206 * 54.23470 * 3 2 1 6 6 H 1.08003 * 120.00161 * 239.99734 * 5 3 2 7 7 C 1.37880 * 120.00091 * 60.00061 * 5 3 2 8 8 N 1.31516 * 119.99870 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99786 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47217 * 89.99802 * 9 7 5 11 11 H 1.48504 * 109.46485 * 209.99772 * 9 7 5 12 12 H 1.48492 * 109.47369 * 329.99572 * 9 7 5 13 13 N 1.46900 * 109.47274 * 294.23173 * 3 2 1 14 14 C 1.46904 * 111.00346 * 274.53971 * 13 3 2 15 15 H 1.09000 * 109.46750 * 35.59028 * 14 13 3 16 16 C 1.50696 * 109.47102 * 155.59053 * 14 13 3 17 17 N 1.31869 * 119.62714 * 44.98035 * 16 14 13 18 18 C 1.31856 * 121.73919 * 179.72043 * 17 16 14 19 19 C 1.38236 * 120.78951 * 0.58783 * 18 17 16 20 20 C 1.38599 * 119.17570 * 359.43026 * 19 18 17 21 21 C 1.38306 * 119.62738 * 224.99876 * 16 14 13 22 22 Cl 1.73598 * 120.43104 * 359.95935 * 21 16 14 23 23 C 1.52995 * 109.47080 * 275.59360 * 14 13 3 24 24 C 1.53005 * 117.50016 * 248.62182 * 23 14 13 25 25 C 1.52998 * 117.50207 * 179.97438 * 23 14 13 26 26 H 1.09000 * 109.47262 * 178.80526 * 1 2 3 27 27 H 1.09003 * 109.47115 * 298.80119 * 1 2 3 28 28 H 1.08995 * 109.47125 * 58.80325 * 1 2 3 29 29 H 1.08998 * 109.47077 * 240.00658 * 2 1 3 30 30 H 1.08998 * 109.47438 * 119.99938 * 2 1 3 31 31 H 0.96996 * 119.99676 * 180.02562 * 8 7 5 32 32 H 1.00902 * 110.99795 * 38.49126 * 13 3 2 33 33 H 1.07999 * 119.60728 * 180.31441 * 18 17 16 34 34 H 1.07998 * 120.41218 * 179.69934 * 19 18 17 35 35 H 1.07999 * 120.79684 * 180.29970 * 20 19 18 36 36 H 1.09003 * 115.55208 * 34.32855 * 23 14 13 37 37 H 1.09000 * 117.49199 * 359.97438 * 24 23 14 38 38 H 1.09000 * 117.50133 * 145.02036 * 24 23 14 39 39 H 1.08999 * 117.50307 * 214.98466 * 25 23 14 40 40 H 1.09000 * 117.49471 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1251 1.4443 0.1032 5 6 1.4245 2.1929 1.1528 6 1 0.8171 3.0663 0.9661 7 6 1.6367 1.7646 2.4461 8 7 2.3759 0.7009 2.6736 9 14 0.8731 2.6945 3.8751 10 1 -0.4681 2.1307 4.1723 11 1 1.7420 2.5625 5.0721 12 1 0.7387 4.1292 3.5168 13 7 1.6672 2.0937 -1.2629 14 6 2.6609 1.8200 -2.3097 15 1 3.0458 0.8074 -2.1894 16 6 2.0137 1.9539 -3.6640 17 7 1.2271 2.9829 -3.9118 18 6 0.6440 3.1439 -5.0835 19 6 0.8296 2.2241 -6.0986 20 6 1.6495 1.1289 -5.8765 21 6 2.2511 0.9959 -4.6329 22 17 3.2885 -0.3552 -4.2981 23 6 3.8126 2.8205 -2.1937 24 6 3.9620 3.8581 -3.3082 25 6 4.9572 2.7003 -3.2018 26 1 -0.3634 -1.0274 -0.0214 27 1 -0.3633 0.4951 0.9006 28 1 -0.3633 0.5323 -0.8790 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.5249 0.3994 3.5834 32 1 0.7446 1.8104 -1.5573 33 1 0.0104 4.0024 -5.2506 34 1 0.3451 2.3595 -7.0543 35 1 1.8166 0.3968 -6.6527 36 1 4.0658 3.1305 -1.1798 37 1 3.2400 3.8276 -4.1242 38 1 4.3134 4.8511 -3.0276 39 1 5.9630 2.9317 -2.8513 40 1 4.8899 1.9081 -3.9474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255162612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:15 Heat of formation + Delta-G solvation = 44.737804 kcal Electronic energy + Delta-G solvation = -22120.846000 eV Core-core repulsion = 18961.768696 eV Total energy + Delta-G solvation = -3159.077303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.66831 -38.94506 -37.65254 -37.37178 -34.46275 -33.39399 -32.76355 -31.38504 -28.56935 -26.60749 -25.20835 -24.46866 -23.94397 -23.13161 -21.66943 -20.34785 -18.47646 -17.83376 -17.57667 -17.11055 -16.94393 -16.55655 -15.87540 -15.41381 -15.17497 -14.59881 -14.41284 -14.34056 -14.16539 -14.04222 -13.66910 -13.30985 -13.21807 -12.80950 -12.60396 -12.47806 -12.44770 -12.23303 -12.11188 -11.92629 -11.73313 -11.42911 -11.23883 -10.92255 -10.85220 -10.70846 -10.39978 -10.30970 -9.84217 -8.85438 -8.02411 -6.09814 -0.07233 0.20639 1.02836 1.43358 1.44847 1.55214 2.47354 2.69726 2.89571 3.20982 3.26440 3.47090 3.76814 3.87900 4.00769 4.04029 4.11135 4.32312 4.39963 4.52021 4.56245 4.57952 4.67932 4.70971 4.74130 4.79030 4.96340 5.01077 5.06563 5.09117 5.23869 5.31641 5.39765 5.43794 5.60468 5.67421 5.75260 5.87159 6.35171 6.70813 6.84160 7.02174 7.02934 7.57443 9.03253 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.005015 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.643733 B = 5581.616626 C = 5663.973879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.137 4.137 3 C 0.226 3.774 4 H 0.000 1.000 5 C -0.495 4.495 6 H 0.049 0.951 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.663 5.663 14 C 0.163 3.837 15 H 0.050 0.950 16 C 0.134 3.866 17 N -0.469 5.469 18 C 0.091 3.909 19 C -0.148 4.148 20 C -0.067 4.067 21 C -0.102 4.102 22 Cl -0.059 7.059 23 C -0.142 4.142 24 C -0.161 4.161 25 C -0.173 4.173 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.258 0.742 32 H 0.329 0.671 33 H 0.189 0.811 34 H 0.185 0.815 35 H 0.171 0.829 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 0.763 -20.467 20.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.177 4.177 3 C 0.117 3.883 4 H 0.018 0.982 5 C -0.534 4.534 6 H 0.067 0.933 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.294 5.294 14 C 0.053 3.947 15 H 0.068 0.932 16 C -0.004 4.004 17 N -0.178 5.178 18 C -0.066 4.066 19 C -0.168 4.168 20 C -0.094 4.094 21 C -0.131 4.131 22 Cl -0.030 7.030 23 C -0.162 4.162 24 C -0.198 4.198 25 C -0.211 4.211 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.206 0.794 34 H 0.202 0.798 35 H 0.189 0.811 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.696 1.766 -19.440 19.532 hybrid contribution -0.073 -1.388 0.558 1.497 sum -0.768 0.379 -18.882 18.901 Atomic orbital electron populations 1.21421 0.96135 0.99182 1.00591 1.21955 0.96304 1.00276 0.99175 1.18968 0.93763 0.89115 0.86447 0.98198 1.21229 1.30118 1.11202 0.90807 0.93254 1.25550 0.96012 0.95920 1.00795 1.70014 1.40216 1.25225 1.20629 0.85684 0.78334 0.79189 0.79177 1.20207 1.21237 1.19864 1.60632 1.03561 1.62719 1.02446 1.19922 0.91742 0.96482 0.86586 0.93221 1.20994 0.94383 0.89894 0.95134 1.67731 1.06878 1.20011 1.23166 1.23595 0.95855 0.99634 0.87550 1.22593 0.98371 0.93422 1.02400 1.21887 0.94011 0.98993 0.94474 1.22099 1.00557 0.92783 0.97676 1.98372 1.65670 1.43649 1.95348 1.22049 0.97238 1.01537 0.95359 1.22979 1.01918 0.94434 1.00462 1.23064 0.95011 1.01137 1.01862 0.93827 0.93714 0.94076 0.96106 0.91796 0.93271 0.85202 0.79446 0.79766 0.81143 0.89776 0.89034 0.88687 0.87727 0.88745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.39 71.98 0.68 -4.40 16 2 C -0.14 -6.68 5.48 30.59 0.17 -6.51 16 3 C 0.23 11.61 2.13 44.17 0.09 11.70 16 4 H 0.00 0.01 7.43 -2.38 -0.02 -0.01 16 5 C -0.49 -27.69 7.35 25.60 0.19 -27.50 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 7 C 0.02 0.85 5.23 84.66 0.44 1.29 16 8 N -0.92 -53.42 11.38 21.45 0.24 -53.17 16 9 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 13 N -0.66 -29.63 5.87 -477.15 -2.80 -32.43 16 14 C 0.16 6.26 2.32 44.17 0.10 6.36 16 15 H 0.05 2.02 5.35 -2.39 -0.01 2.01 16 16 C 0.13 4.22 3.74 42.57 0.16 4.38 16 17 N -0.47 -14.04 8.51 -183.80 -1.56 -15.60 16 18 C 0.09 1.84 11.18 84.69 0.95 2.79 16 19 C -0.15 -2.18 10.11 22.36 0.23 -1.96 16 20 C -0.07 -1.22 9.98 22.49 0.22 -1.00 16 21 C -0.10 -2.66 6.22 22.42 0.14 -2.52 16 22 Cl -0.06 -1.58 26.42 -2.72 -0.07 -1.65 16 23 C -0.14 -5.31 5.71 -10.79 -0.06 -5.37 16 24 C -0.16 -5.00 9.57 30.61 0.29 -4.70 16 25 C -0.17 -5.15 10.02 30.61 0.31 -4.84 16 26 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 2.14 7.05 -2.39 -0.02 2.13 16 28 H 0.04 1.66 6.42 -2.39 -0.02 1.64 16 29 H 0.02 0.93 7.40 -2.39 -0.02 0.92 16 30 H 0.06 3.49 6.25 -2.39 -0.01 3.48 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.33 14.47 6.17 -89.69 -0.55 13.91 16 33 H 0.19 2.58 8.06 -2.91 -0.02 2.56 16 34 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 35 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.08 3.66 7.90 -2.39 -0.02 3.64 16 37 H 0.09 2.80 5.56 -2.39 -0.01 2.78 16 38 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.09 2.66 7.33 -2.39 -0.02 2.64 16 Total: -1.00 -64.82 333.05 2.24 -62.58 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.50 Total: 25.68 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 3.91 Total: -32.28 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -4.12 Total: -101.21 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -0.07 Total: -1.65 kcal Total: -64.82 2.24 -62.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255162612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.315 kcal (2) G-P(sol) polarization free energy of solvation -64.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds