Wall clock time and date at job start Tue Mar 31 2020 07:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 111.00211 * 2 1 4 4 C 1.50699 * 109.47369 * 66.04232 * 3 2 1 5 5 H 1.08000 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00090 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99988 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00085 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.46819 * 89.99714 * 8 6 4 10 10 H 1.48494 * 109.47083 * 210.00024 * 8 6 4 11 11 H 1.48500 * 109.46877 * 330.00384 * 8 6 4 12 12 C 1.46895 * 111.00198 * 236.04542 * 2 1 3 13 13 C 1.53046 * 109.45907 * 298.95401 * 12 2 1 14 14 C 1.53196 * 109.31366 * 181.38487 * 13 12 2 15 15 N 1.46925 * 108.77419 * 305.36458 * 14 13 12 16 16 C 1.34777 * 120.62933 * 233.58799 * 15 14 13 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99928 * 180.27723 * 16 15 14 19 19 F 1.39901 * 109.46959 * 179.72354 * 18 16 15 20 20 F 1.39898 * 109.47055 * 299.72131 * 18 16 15 21 21 F 1.39900 * 109.47100 * 59.72196 * 18 16 15 22 22 C 1.46931 * 118.73924 * 53.85839 * 15 14 13 23 23 C 1.53036 * 109.46143 * 59.02101 * 12 2 1 24 24 H 1.08992 * 109.46967 * 183.96024 * 1 2 3 25 25 H 1.08999 * 109.46970 * 303.95452 * 1 2 3 26 26 H 1.08994 * 109.47266 * 63.95095 * 1 2 3 27 27 H 1.08991 * 109.47314 * 186.04678 * 3 2 1 28 28 H 1.09003 * 109.46763 * 306.04878 * 3 2 1 29 29 H 0.96994 * 120.00024 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.45061 * 178.99002 * 12 2 1 31 31 H 1.08997 * 109.49431 * 61.42948 * 13 12 2 32 32 H 1.08999 * 109.52034 * 301.35467 * 13 12 2 33 33 H 1.08994 * 109.58453 * 185.57881 * 14 13 12 34 34 H 1.09001 * 109.70084 * 65.22264 * 14 13 12 35 35 H 1.09000 * 109.58052 * 65.92898 * 22 15 14 36 36 H 1.08995 * 109.58699 * 186.35097 * 22 15 14 37 37 H 1.09003 * 109.49561 * 298.56906 * 23 12 2 38 38 H 1.08998 * 109.49977 * 58.66282 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0746 1.5114 2.0487 6 6 2.0268 3.3496 1.5284 7 7 1.7144 3.9391 2.6616 8 14 2.9989 4.2766 0.2303 9 1 2.0614 4.9803 -0.6815 10 1 3.8856 5.2683 0.8902 11 1 3.8223 3.3182 -0.5499 12 6 1.9955 -0.7660 -1.1375 13 6 1.5260 -2.2190 -1.0348 14 6 2.1052 -3.0224 -2.2035 15 7 1.7393 -2.3576 -3.4616 16 6 1.1184 -3.0405 -4.4438 17 8 0.8571 -4.2153 -4.2939 18 6 0.7552 -2.3460 -5.7310 19 9 0.1304 -3.2554 -6.5913 20 9 -0.1170 -1.2865 -5.4592 21 9 1.9149 -1.8516 -6.3375 22 6 2.0684 -0.9357 -3.6311 23 6 1.4848 -0.1543 -2.4441 24 1 -0.3633 -1.0251 0.0710 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4513 -0.9232 27 1 3.0797 1.3444 -0.1082 28 1 1.5611 1.9273 -0.8309 29 1 1.9890 4.8552 2.8236 30 1 3.0849 -0.7345 -1.1232 31 1 0.4373 -2.2531 -1.0738 32 1 1.8698 -2.6471 -0.0932 33 1 1.6953 -4.0323 -2.1913 34 1 3.1907 -3.0675 -2.1163 35 1 3.1511 -0.8119 -3.6567 36 1 1.6345 -0.5685 -4.5610 37 1 0.3964 -0.2080 -2.4700 38 1 1.7997 0.8873 -2.5057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255979823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:19 Heat of formation + Delta-G solvation = -166.904971 kcal Electronic energy + Delta-G solvation = -25045.669293 eV Core-core repulsion = 20894.848565 eV Total energy + Delta-G solvation = -4150.820728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.70150 -48.16435 -48.15681 -40.62871 -38.60761 -36.06971 -32.88042 -31.81266 -31.09515 -28.48441 -27.65489 -25.86877 -23.92021 -23.62094 -21.79600 -20.59657 -19.62569 -19.12823 -18.95767 -18.26718 -17.06038 -16.67076 -15.70555 -15.47803 -15.19022 -14.90189 -14.82362 -14.60768 -14.54189 -14.39338 -14.32674 -14.23638 -13.88313 -13.79352 -13.50011 -13.19087 -12.88519 -12.40511 -12.24830 -12.08159 -11.59360 -11.32117 -11.09230 -10.87816 -10.81902 -10.57759 -10.47059 -10.07758 -9.88823 -9.35461 -9.23186 -8.63744 -7.46606 -6.11074 -4.08855 1.45589 1.57830 2.64596 3.17694 3.22055 3.30000 3.30785 3.63621 3.78975 4.35378 4.40547 4.57570 4.74853 4.81743 5.02843 5.08001 5.20639 5.27804 5.41605 5.47320 5.58450 5.70640 5.85042 5.91696 6.02769 6.13664 6.23883 6.36946 6.58271 6.61738 6.77361 6.91466 7.12724 7.51697 7.79918 7.94483 8.58490 8.97545 9.50144 11.02102 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026194 B = 0.004040 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.695690 B = 6929.208606 C = 7439.689490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.521 5.521 3 C 0.161 3.839 4 C -0.511 4.511 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.874 3.126 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.081 3.919 13 C -0.127 4.127 14 C 0.112 3.888 15 N -0.578 5.578 16 C 0.482 3.518 17 O -0.487 6.487 18 C 0.450 3.550 19 F -0.155 7.155 20 F -0.165 7.165 21 F -0.168 7.168 22 C 0.095 3.905 23 C -0.171 4.171 24 H 0.050 0.950 25 H 0.080 0.920 26 H 0.016 0.984 27 H 0.028 0.972 28 H -0.014 1.014 29 H 0.264 0.736 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 -12.193 -16.127 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.243 5.243 3 C 0.035 3.965 4 C -0.549 4.549 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.029 4.029 13 C -0.165 4.165 14 C -0.009 4.009 15 N -0.311 5.311 16 C 0.262 3.738 17 O -0.361 6.361 18 C 0.392 3.608 19 F -0.136 7.136 20 F -0.146 7.146 21 F -0.149 7.149 22 C -0.027 4.027 23 C -0.211 4.211 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.034 0.966 27 H 0.046 0.954 28 H 0.004 0.996 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.527 -12.854 -15.483 20.130 hybrid contribution 0.157 1.394 -1.696 2.201 sum 0.685 -11.459 -17.179 20.662 Atomic orbital electron populations 1.22338 0.88430 1.00112 1.01003 1.62202 1.07483 1.16599 1.38038 1.20202 0.95129 0.84071 0.97076 1.21028 1.35712 0.97215 1.00981 0.90142 1.24900 0.95728 0.97364 0.95294 1.69886 1.46758 1.13279 1.23890 0.86879 0.80631 0.80116 0.82196 1.20352 1.21124 1.19196 1.21760 0.99800 0.92929 0.88379 1.22027 1.01598 0.95201 0.97675 1.21934 1.00758 0.97503 0.80741 1.48219 1.55309 1.11947 1.15606 1.20229 0.81190 0.87787 0.84607 1.90849 1.52551 1.14128 1.78535 1.20294 0.75840 0.77743 0.86912 1.93259 1.82478 1.66569 1.71277 1.93263 1.70119 1.57597 1.93646 1.93255 1.48612 1.87972 1.85081 1.22255 1.01820 0.78315 1.00327 1.22774 1.02189 1.00720 0.95400 0.93144 0.90152 0.96599 0.95439 0.99608 0.92610 0.90111 0.91100 0.89000 0.88387 0.90007 0.89498 0.89810 0.90648 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 8.63 60.06 0.52 1.04 16 2 N -0.52 -9.76 4.74 -236.29 -1.12 -10.88 16 3 C 0.16 3.61 3.23 -4.97 -0.02 3.59 16 4 C -0.51 -13.89 9.01 -34.44 -0.31 -14.20 16 5 H 0.08 2.40 7.37 -52.49 -0.39 2.01 16 6 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 7 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 8 Si 0.87 20.63 27.47 -169.99 -4.67 15.96 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 12 C 0.08 1.15 2.18 -67.67 -0.15 1.00 16 13 C -0.13 -1.49 5.11 -26.61 -0.14 -1.62 16 14 C 0.11 1.13 6.43 -3.71 -0.02 1.11 16 15 N -0.58 -6.29 2.97 -172.50 -0.51 -6.80 16 16 C 0.48 5.80 7.27 -10.98 -0.08 5.72 16 17 O -0.49 -7.04 16.03 5.55 0.09 -6.95 16 18 C 0.45 4.92 2.79 36.01 0.10 5.02 16 19 F -0.15 -1.81 16.92 2.25 0.04 -1.77 16 20 F -0.16 -1.80 15.68 2.25 0.04 -1.76 16 21 F -0.17 -1.69 15.92 2.25 0.04 -1.65 16 22 C 0.10 0.98 5.85 -3.48 -0.02 0.96 16 23 C -0.17 -2.20 4.67 -26.39 -0.12 -2.32 16 24 H 0.05 0.76 6.36 -51.93 -0.33 0.43 16 25 H 0.08 1.62 6.76 -51.93 -0.35 1.27 16 26 H 0.02 0.26 6.31 -51.93 -0.33 -0.06 16 27 H 0.03 0.62 7.06 -51.93 -0.37 0.26 16 28 H -0.01 -0.30 6.33 -51.93 -0.33 -0.63 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 31 H 0.07 0.88 6.50 -51.93 -0.34 0.54 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.01 7.00 -51.93 -0.36 0.64 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.80 4.65 -51.93 -0.24 0.56 16 37 H 0.07 1.01 6.47 -51.93 -0.34 0.68 16 38 H 0.09 1.21 6.69 -51.93 -0.35 0.86 16 LS Contribution 307.36 15.07 4.63 4.63 Total: -1.00 -29.97 307.36 -5.60 -35.57 By element: Atomic # 1 Polarization: 2.19 SS G_CDS: -4.57 Total: -2.38 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -0.34 Total: 2.13 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.86 Total: -43.78 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: 0.09 Total: -6.95 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.11 Total: -5.18 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.97 -5.60 -35.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255979823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.333 kcal (2) G-P(sol) polarization free energy of solvation -29.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds