Wall clock time and date at job start Tue Mar 31 2020 07:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 111.00211 * 2 1 4 4 C 1.50699 * 109.47369 * 66.04232 * 3 2 1 5 5 H 1.08000 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00090 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99988 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 120.00085 * 0.02562 * 6 4 3 9 9 H 1.48504 * 109.46819 * 89.99714 * 8 6 4 10 10 H 1.48494 * 109.47083 * 210.00024 * 8 6 4 11 11 H 1.48500 * 109.46877 * 330.00384 * 8 6 4 12 12 C 1.46895 * 111.00198 * 236.04542 * 2 1 3 13 13 C 1.53046 * 109.45907 * 298.95401 * 12 2 1 14 14 C 1.53196 * 109.31366 * 181.38487 * 13 12 2 15 15 N 1.46925 * 108.77419 * 305.36458 * 14 13 12 16 16 C 1.34777 * 120.62933 * 233.58799 * 15 14 13 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99928 * 180.27723 * 16 15 14 19 19 F 1.39901 * 109.46959 * 179.72354 * 18 16 15 20 20 F 1.39898 * 109.47055 * 299.72131 * 18 16 15 21 21 F 1.39900 * 109.47100 * 59.72196 * 18 16 15 22 22 C 1.46931 * 118.73924 * 53.85839 * 15 14 13 23 23 C 1.53036 * 109.46143 * 59.02101 * 12 2 1 24 24 H 1.08992 * 109.46967 * 183.96024 * 1 2 3 25 25 H 1.08999 * 109.46970 * 303.95452 * 1 2 3 26 26 H 1.08994 * 109.47266 * 63.95095 * 1 2 3 27 27 H 1.08991 * 109.47314 * 186.04678 * 3 2 1 28 28 H 1.09003 * 109.46763 * 306.04878 * 3 2 1 29 29 H 0.96994 * 120.00024 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.45061 * 178.99002 * 12 2 1 31 31 H 1.08997 * 109.49431 * 61.42948 * 13 12 2 32 32 H 1.08999 * 109.52034 * 301.35467 * 13 12 2 33 33 H 1.08994 * 109.58453 * 185.57881 * 14 13 12 34 34 H 1.09001 * 109.70084 * 65.22264 * 14 13 12 35 35 H 1.09000 * 109.58052 * 65.92898 * 22 15 14 36 36 H 1.08995 * 109.58699 * 186.35097 * 22 15 14 37 37 H 1.09003 * 109.49561 * 298.56906 * 23 12 2 38 38 H 1.08998 * 109.49977 * 58.66282 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 1.2984 5 1 1.0746 1.5114 2.0487 6 6 2.0268 3.3496 1.5284 7 7 1.7144 3.9391 2.6616 8 14 2.9989 4.2766 0.2303 9 1 2.0614 4.9803 -0.6815 10 1 3.8856 5.2683 0.8902 11 1 3.8223 3.3182 -0.5499 12 6 1.9955 -0.7660 -1.1375 13 6 1.5260 -2.2190 -1.0348 14 6 2.1052 -3.0224 -2.2035 15 7 1.7393 -2.3576 -3.4616 16 6 1.1184 -3.0405 -4.4438 17 8 0.8571 -4.2153 -4.2939 18 6 0.7552 -2.3460 -5.7310 19 9 0.1304 -3.2554 -6.5913 20 9 -0.1170 -1.2865 -5.4592 21 9 1.9149 -1.8516 -6.3375 22 6 2.0684 -0.9357 -3.6311 23 6 1.4848 -0.1543 -2.4441 24 1 -0.3633 -1.0251 0.0710 25 1 -0.3633 0.5740 0.8524 26 1 -0.3633 0.4513 -0.9232 27 1 3.0797 1.3444 -0.1082 28 1 1.5611 1.9273 -0.8309 29 1 1.9890 4.8552 2.8236 30 1 3.0849 -0.7345 -1.1232 31 1 0.4373 -2.2531 -1.0738 32 1 1.8698 -2.6471 -0.0932 33 1 1.6953 -4.0323 -2.1913 34 1 3.1907 -3.0675 -2.1163 35 1 3.1511 -0.8119 -3.6567 36 1 1.6345 -0.5685 -4.5610 37 1 0.3964 -0.2080 -2.4700 38 1 1.7997 0.8873 -2.5057 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255979823.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:18 Heat of formation + Delta-G solvation = -187.621426 kcal Electronic energy + Delta-G solvation = -25046.567626 eV Core-core repulsion = 20894.848565 eV Total energy + Delta-G solvation = -4151.719061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.55174 -49.02864 -48.99150 -41.58205 -39.76852 -37.27716 -34.76286 -33.02771 -32.15736 -29.92776 -28.93296 -27.21714 -25.20362 -24.58038 -23.07815 -21.83562 -20.67270 -20.01554 -19.87700 -19.18538 -18.99960 -17.67839 -16.77414 -16.59784 -16.37459 -16.20703 -15.78100 -15.69493 -15.60546 -15.39842 -15.29817 -15.09775 -15.07919 -14.92234 -14.71512 -14.41779 -14.20873 -13.95846 -13.47812 -13.19805 -12.95297 -12.75527 -12.52114 -12.39177 -12.03860 -11.88246 -11.73340 -11.52437 -11.38206 -11.29015 -10.75769 -10.13447 -8.93409 -8.25250 -6.28552 0.53897 0.70328 1.37122 1.39135 1.49392 1.79050 2.31088 2.37039 2.77900 2.93995 3.08140 3.21022 3.61772 3.80729 3.87199 4.04130 4.21528 4.33999 4.41454 4.54377 4.60740 4.64361 4.70288 4.76096 4.85583 4.90890 5.06080 5.10773 5.15831 5.33609 5.35989 5.58544 5.70239 6.02629 6.23377 6.38774 6.70670 6.79058 7.35245 8.91621 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026194 B = 0.004040 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.695690 B = 6929.208606 C = 7439.689490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.538 5.538 3 C 0.173 3.827 4 C -0.517 4.517 5 H 0.035 0.965 6 C 0.005 3.995 7 N -0.952 5.952 8 Si 0.946 3.054 9 H -0.269 1.269 10 H -0.286 1.286 11 H -0.240 1.240 12 C 0.079 3.921 13 C -0.118 4.118 14 C 0.116 3.884 15 N -0.574 5.574 16 C 0.483 3.517 17 O -0.515 6.515 18 C 0.457 3.543 19 F -0.160 7.160 20 F -0.164 7.164 21 F -0.160 7.160 22 C 0.100 3.900 23 C -0.167 4.167 24 H 0.075 0.925 25 H 0.042 0.958 26 H 0.024 0.976 27 H 0.033 0.967 28 H -0.007 1.007 29 H 0.265 0.735 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.902 -12.736 -18.650 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.261 5.261 3 C 0.046 3.954 4 C -0.555 4.555 5 H 0.053 0.947 6 C -0.191 4.191 7 N -0.593 5.593 8 Si 0.769 3.231 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.163 1.163 12 C -0.030 4.030 13 C -0.156 4.156 14 C -0.005 4.005 15 N -0.306 5.306 16 C 0.263 3.737 17 O -0.391 6.391 18 C 0.399 3.601 19 F -0.141 7.141 20 F -0.145 7.145 21 F -0.141 7.141 22 C -0.022 4.022 23 C -0.206 4.206 24 H 0.093 0.907 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.010 0.990 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.944 -13.416 -18.022 22.551 hybrid contribution -0.346 1.503 -0.825 1.749 sum 1.599 -11.913 -18.847 22.353 Atomic orbital electron populations 1.22228 0.88149 1.01073 0.99688 1.62061 1.07898 1.14896 1.41223 1.19927 0.95326 0.85859 0.94295 1.21334 1.34617 0.97430 1.02127 0.94715 1.25876 0.97060 0.98521 0.97685 1.70061 1.48792 1.13843 1.26577 0.85731 0.79240 0.78829 0.79252 1.19458 1.21211 1.16347 1.21883 1.00166 0.93529 0.87409 1.21930 1.01155 0.93783 0.98744 1.21967 1.02034 0.96941 0.79534 1.48298 1.54544 1.12181 1.15549 1.20344 0.80829 0.87509 0.85002 1.90842 1.53735 1.15329 1.79176 1.20083 0.75983 0.77585 0.86463 1.93252 1.82627 1.66846 1.71384 1.93270 1.70153 1.57463 1.93632 1.93274 1.48119 1.87813 1.84899 1.22301 1.03138 0.77374 0.99395 1.22668 1.01756 1.00559 0.95639 0.90665 0.93898 0.95773 0.94942 0.98965 0.92582 0.89307 0.91861 0.88736 0.88346 0.87667 0.87159 0.88888 0.91458 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.29 8.63 127.69 1.10 2.39 16 2 N -0.54 -19.66 4.74 -901.49 -4.27 -23.94 16 3 C 0.17 7.55 3.23 85.56 0.28 7.83 16 4 C -0.52 -28.73 9.01 25.60 0.23 -28.50 16 5 H 0.03 2.19 7.37 -2.91 -0.02 2.16 16 6 C 0.01 0.31 5.47 84.66 0.46 0.77 16 7 N -0.95 -58.63 13.96 21.45 0.30 -58.34 16 8 Si 0.95 41.98 27.47 68.60 1.88 43.86 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16 12 C 0.08 2.04 2.18 44.94 0.10 2.14 16 13 C -0.12 -2.47 5.11 30.68 0.16 -2.31 16 14 C 0.12 1.98 6.43 86.36 0.56 2.54 16 15 N -0.57 -10.69 2.97 -818.06 -2.43 -13.12 16 16 C 0.48 10.45 7.27 87.66 0.64 11.09 16 17 O -0.52 -13.97 16.03 -3.04 -0.05 -14.01 16 18 C 0.46 8.91 2.79 71.24 0.20 9.11 16 19 F -0.16 -3.46 16.92 44.97 0.76 -2.70 16 20 F -0.16 -3.18 15.68 44.97 0.71 -2.48 16 21 F -0.16 -2.75 15.92 44.97 0.72 -2.03 16 22 C 0.10 1.68 5.85 86.51 0.51 2.19 16 23 C -0.17 -3.80 4.67 30.82 0.14 -3.65 16 24 H 0.07 2.22 6.36 -2.39 -0.02 2.21 16 25 H 0.04 1.80 6.76 -2.39 -0.02 1.79 16 26 H 0.02 0.79 6.31 -2.39 -0.02 0.78 16 27 H 0.03 1.39 7.06 -2.39 -0.02 1.38 16 28 H -0.01 -0.31 6.33 -2.39 -0.02 -0.32 16 29 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.09 2.19 8.03 -2.39 -0.02 2.17 16 31 H 0.06 1.43 6.50 -2.39 -0.02 1.42 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.10 1.76 7.00 -2.39 -0.02 1.75 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.44 4.65 -2.39 -0.01 1.43 16 37 H 0.07 1.65 6.47 -2.39 -0.02 1.63 16 38 H 0.08 1.95 6.69 -2.39 -0.02 1.94 16 Total: -1.00 -66.31 307.36 3.03 -63.29 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: 1.04 Total: 5.88 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 4.37 Total: 3.59 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -6.40 Total: -95.39 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.05 Total: -14.01 kcal Atomic # 9 Polarization: -9.39 SS G_CDS: 2.18 Total: -7.21 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.88 Total: 43.86 kcal Total: -66.31 3.03 -63.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255979823.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.334 kcal (2) G-P(sol) polarization free energy of solvation -66.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds