Wall clock time and date at job start Tue Mar 31 2020 07:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47137 * 2 1 4 4 O 1.42903 * 109.47331 * 119.99776 * 2 1 3 5 5 C 1.53007 * 109.47349 * 239.99788 * 2 1 3 6 6 C 1.52995 * 109.47342 * 175.00074 * 5 2 1 7 7 O 1.45199 * 109.47243 * 179.97438 * 6 5 2 8 8 C 1.34229 * 116.99926 * 180.02562 * 7 6 5 9 9 O 1.20823 * 120.00398 * 359.97438 * 8 7 6 10 10 C 1.50703 * 119.99756 * 180.02562 * 8 7 6 11 11 C 1.50699 * 109.47027 * 179.97438 * 10 8 7 12 12 C 1.38328 * 119.96230 * 269.97567 * 11 10 8 13 13 C 1.38280 * 120.13484 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.07150 * 359.67534 * 13 12 11 15 15 C 1.38861 * 119.92830 * 0.59673 * 14 13 12 16 16 O 1.35751 * 120.06597 * 179.69892 * 15 14 13 17 17 C 1.34829 * 117.00376 * 354.17384 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38657 * 120.00083 * 185.03464 * 17 16 15 20 20 N 1.31555 * 119.99797 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99748 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47410 * 90.00109 * 21 19 17 23 23 H 1.48504 * 109.46801 * 209.99865 * 21 19 17 24 24 H 1.48497 * 109.47495 * 329.99577 * 21 19 17 25 25 C 1.38073 * 119.96947 * 89.99413 * 11 10 8 26 26 H 1.09000 * 109.47137 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47326 * 300.00048 * 1 2 3 28 28 H 1.08999 * 109.47346 * 60.00441 * 1 2 3 29 29 H 0.96701 * 114.00077 * 299.99992 * 4 2 1 30 30 H 1.09002 * 109.46942 * 54.99871 * 5 2 1 31 31 H 1.08998 * 109.46999 * 295.00309 * 5 2 1 32 32 H 1.09002 * 109.47268 * 59.99997 * 6 5 2 33 33 H 1.09003 * 109.47185 * 300.00539 * 6 5 2 34 34 H 1.08993 * 109.47200 * 59.99723 * 10 8 7 35 35 H 1.09003 * 109.46989 * 299.99599 * 10 8 7 36 36 H 1.08001 * 119.93314 * 0.02562 * 12 11 10 37 37 H 1.08007 * 119.96121 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.03709 * 180.32387 * 14 13 12 39 39 H 0.96998 * 119.99749 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.03594 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7213 -1.2493 6 6 3.5648 -0.6134 -1.3137 7 8 4.0489 -1.2984 -2.4989 8 6 5.3754 -1.2974 -2.7042 9 8 6.1077 -0.7420 -1.9200 10 6 5.9511 -1.9879 -3.9137 11 6 7.4508 -1.8404 -3.9099 12 6 8.0400 -0.7565 -4.5358 13 6 9.4158 -0.6179 -4.5349 14 6 10.2058 -1.5584 -3.9030 15 6 9.6176 -2.6505 -3.2787 16 8 10.3917 -3.5796 -2.6621 17 6 11.7272 -3.4494 -2.7946 18 1 12.1381 -2.5890 -3.3017 19 6 12.5729 -4.4201 -2.2797 20 7 13.8758 -4.2932 -2.4094 21 14 11.8619 -5.9086 -1.4031 22 1 11.6208 -6.9942 -2.3871 23 1 12.8203 -6.3797 -0.3711 24 1 10.5796 -5.5351 -0.7539 25 6 8.2354 -2.7873 -3.2821 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.7210 -0.2701 1.9980 30 1 1.6054 -0.2618 -2.1370 31 1 1.7516 -1.7715 -1.2056 32 1 3.9994 -1.0729 -0.4259 33 1 3.8532 0.4369 -1.3573 34 1 5.5442 -1.5358 -4.8182 35 1 5.6896 -3.0457 -3.8869 36 1 7.4242 -0.0171 -5.0261 37 1 9.8729 0.2292 -5.0248 38 1 11.2800 -1.4468 -3.8982 39 1 14.4675 -4.9721 -2.0488 40 1 7.7749 -3.6337 -2.7943 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261586977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:15 Heat of formation + Delta-G solvation = -150.035755 kcal Electronic energy + Delta-G solvation = -22482.101082 eV Core-core repulsion = 18841.575848 eV Total energy + Delta-G solvation = -3640.525234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.45308 -39.12525 -38.20682 -36.97128 -36.16066 -33.09114 -32.44678 -32.18227 -29.85763 -29.42413 -27.40582 -25.19302 -24.12126 -21.95847 -21.46591 -21.42003 -20.17654 -17.98078 -17.72184 -17.55364 -17.15107 -16.51787 -16.18902 -15.22567 -15.09726 -14.84346 -14.72286 -14.27236 -13.80654 -13.74750 -13.56438 -13.28271 -12.95191 -12.66925 -12.55371 -12.40412 -12.19392 -12.06433 -11.77706 -11.66859 -11.35371 -11.30995 -10.86909 -10.80873 -10.71273 -10.55499 -10.43865 -10.28134 -10.13902 -9.37964 -8.85144 -8.18548 -7.36338 -6.38877 -4.05637 1.90444 2.27107 2.36774 2.79160 3.24684 3.27800 3.43742 3.79984 4.26640 4.30391 4.45803 4.53102 4.65526 4.70055 4.86144 4.95509 4.99521 5.09788 5.15872 5.16928 5.25250 5.32096 5.48227 5.54837 5.59558 5.67476 5.71023 5.76333 5.83254 6.11317 6.24553 6.45353 6.54338 6.78229 7.07929 7.19325 7.22860 7.31206 7.59985 7.82182 7.89854 8.06100 8.96505 9.58978 10.68823 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.020274 B = 0.002866 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.771717 B = 9766.225149 C =10704.536512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.102 3.898 3 H 0.059 0.941 4 O -0.566 6.566 5 C -0.113 4.113 6 C 0.068 3.932 7 O -0.365 6.365 8 C 0.459 3.541 9 O -0.489 6.489 10 C -0.064 4.064 11 C -0.046 4.046 12 C -0.186 4.186 13 C -0.076 4.076 14 C -0.214 4.214 15 C 0.160 3.840 16 O -0.218 6.218 17 C -0.389 4.389 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.172 4.172 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.379 0.621 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.134 0.866 39 H 0.279 0.721 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.234 8.073 0.483 26.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.043 3.957 3 H 0.077 0.923 4 O -0.372 6.372 5 C -0.150 4.150 6 C -0.006 4.006 7 O -0.283 6.283 8 C 0.301 3.699 9 O -0.374 6.374 10 C -0.101 4.101 11 C -0.046 4.046 12 C -0.205 4.205 13 C -0.094 4.094 14 C -0.233 4.233 15 C 0.108 3.892 16 O -0.123 6.123 17 C -0.464 4.464 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.731 3.269 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.191 4.191 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.227 0.773 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -24.578 7.573 0.494 25.724 hybrid contribution -0.258 -0.036 0.901 0.938 sum -24.836 7.538 1.395 25.993 Atomic orbital electron populations 1.22490 0.95852 1.03168 1.02712 1.21703 0.93028 0.95309 0.85612 0.92320 1.86577 1.77049 1.57588 1.15989 1.21593 0.93620 1.03076 0.96728 1.22960 0.94195 0.96991 0.86407 1.86451 1.25490 1.70866 1.45490 1.23809 0.80048 0.78472 0.87580 1.90724 1.60084 1.41011 1.45626 1.20257 0.93108 1.02353 0.94430 1.18672 0.91554 0.95477 0.98932 1.20444 0.94767 0.98931 1.06384 1.20746 0.93294 0.97710 0.97667 1.21326 1.01178 0.96457 1.04380 1.18997 0.90352 0.88942 0.90923 1.83570 1.19347 1.45849 1.63540 1.20765 0.76798 1.09988 1.38895 0.87626 1.24460 0.94374 0.98391 0.96787 1.69646 1.01787 1.35797 1.44603 0.86185 0.79590 0.81609 0.79562 1.19877 1.20793 1.18347 1.19970 0.91037 1.01744 1.06389 0.91512 0.92075 0.91325 0.77319 0.89445 0.89882 0.90395 0.91536 0.87113 0.87058 0.87533 0.87018 0.84872 0.91084 0.86612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.90 9.53 37.15 0.35 -0.54 16 2 C 0.10 0.69 3.58 -26.73 -0.10 0.60 16 3 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 4 O -0.57 -4.65 12.86 -35.23 -0.45 -5.11 16 5 C -0.11 -0.92 5.30 -26.73 -0.14 -1.06 16 6 C 0.07 0.78 5.36 37.15 0.20 0.98 16 7 O -0.36 -4.70 10.22 -39.25 -0.40 -5.10 16 8 C 0.46 6.90 7.95 36.01 0.29 7.19 16 9 O -0.49 -9.29 15.78 -18.75 -0.30 -9.59 16 10 C -0.06 -0.84 5.94 -29.03 -0.17 -1.01 16 11 C -0.05 -0.81 4.37 -104.65 -0.46 -1.26 16 12 C -0.19 -3.23 9.70 -39.53 -0.38 -3.61 16 13 C -0.08 -1.42 10.04 -39.61 -0.40 -1.82 16 14 C -0.21 -4.78 9.17 -39.39 -0.36 -5.14 16 15 C 0.16 3.82 6.65 -39.11 -0.26 3.56 16 16 O -0.22 -5.91 8.59 0.05 0.00 -5.91 16 17 C -0.39 -11.18 9.95 30.89 0.31 -10.87 16 18 H 0.11 3.09 5.44 -52.49 -0.29 2.80 16 19 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 20 N -0.88 -25.78 13.96 55.48 0.77 -25.00 16 21 Si 0.90 22.11 28.62 -169.99 -4.86 17.24 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.17 -3.56 9.65 -39.40 -0.38 -3.94 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.38 1.51 9.08 45.56 0.41 1.93 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.03 7.81 -51.93 -0.41 0.62 16 33 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 34 H 0.11 1.11 8.08 -51.93 -0.42 0.69 16 35 H 0.11 1.24 8.09 -51.93 -0.42 0.82 16 36 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 38 H 0.13 3.09 5.64 -52.49 -0.30 2.79 16 39 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 347.64 15.07 5.24 5.24 Total: -1.00 -34.02 347.64 -6.37 -40.39 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.78 Total: 3.06 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -1.60 Total: -15.23 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.77 Total: -25.00 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -1.15 Total: -25.70 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.86 Total: 17.24 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.02 -6.37 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261586977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.641 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds