Wall clock time and date at job start Tue Mar 31 2020 07:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47085 * 2 1 4 4 O 1.42906 * 109.47198 * 240.00485 * 2 1 3 5 5 C 1.52997 * 109.47635 * 120.00272 * 2 1 3 6 6 C 1.52995 * 109.47477 * 184.99947 * 5 2 1 7 7 O 1.45208 * 109.47100 * 179.97438 * 6 5 2 8 8 C 1.34229 * 116.99784 * 180.02562 * 7 6 5 9 9 O 1.20830 * 119.99962 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99937 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.47208 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96230 * 269.97915 * 11 10 8 13 13 C 1.38281 * 120.13505 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47063 * 60.00398 * 21 19 17 23 23 H 1.48498 * 109.47240 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47319 * 300.00306 * 21 19 17 25 25 C 1.38073 * 119.96534 * 89.99715 * 11 10 8 26 26 H 1.08996 * 109.46739 * 299.99471 * 1 2 3 27 27 H 1.08990 * 109.47253 * 59.99799 * 1 2 3 28 28 H 1.09003 * 109.47085 * 179.97438 * 1 2 3 29 29 H 0.96703 * 113.99436 * 300.00253 * 4 2 1 30 30 H 1.09002 * 109.46891 * 64.99692 * 5 2 1 31 31 H 1.09003 * 109.47336 * 305.00372 * 5 2 1 32 32 H 1.09002 * 109.47268 * 59.99976 * 6 5 2 33 33 H 1.08998 * 109.47265 * 300.00051 * 6 5 2 34 34 H 1.09002 * 109.46571 * 59.99926 * 10 8 7 35 35 H 1.08992 * 109.46782 * 300.00190 * 10 8 7 36 36 H 1.08001 * 119.93314 * 0.02562 * 12 11 10 37 37 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.03256 * 180.31909 * 14 13 12 39 39 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 40 40 H 1.07996 * 120.03547 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2491 6 6 3.5649 -0.6133 1.3135 7 8 4.0489 -1.2974 2.4994 8 6 5.3753 -1.2952 2.7054 9 8 6.1076 -0.7398 1.9211 10 6 5.9510 -1.9846 3.9156 11 6 7.4506 -1.8361 3.9124 12 6 8.2375 -2.7850 3.2848 13 6 9.6140 -2.6525 3.2801 14 6 10.2069 -1.5681 3.8969 15 6 9.4201 -0.6169 4.5327 16 8 10.0002 0.4467 5.1449 17 6 11.3471 0.4589 5.2047 18 1 11.9167 -0.3115 4.7062 19 6 12.0009 1.4605 5.9060 20 7 11.3071 2.3986 6.5135 21 14 13.8670 1.4769 5.9894 22 1 14.4229 1.5790 4.6162 23 1 14.3164 2.6416 6.7936 24 1 14.3452 0.2230 6.6251 25 6 8.0377 -0.7532 4.5362 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7210 -1.5951 -1.2330 30 1 1.7517 -1.7715 1.2054 31 1 1.6055 -0.2619 2.1370 32 1 3.8533 0.4370 1.3572 33 1 3.9995 -1.0728 0.4258 34 1 5.6902 -3.0427 3.8893 35 1 5.5434 -1.5323 4.8196 36 1 7.7759 -3.6310 2.7974 37 1 10.2257 -3.3951 2.7897 38 1 11.2817 -1.4625 3.8885 39 1 11.7645 3.0991 7.0045 40 1 7.4228 -0.0131 5.0266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261586978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:18 Heat of formation + Delta-G solvation = -153.140946 kcal Electronic energy + Delta-G solvation = -22431.630269 eV Core-core repulsion = 18790.970384 eV Total energy + Delta-G solvation = -3640.659885 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41931 -38.98621 -38.30266 -36.83413 -36.07235 -32.88582 -32.40565 -32.03187 -29.86365 -29.20094 -27.32504 -25.27405 -24.04267 -21.88525 -21.78387 -21.46479 -20.27516 -17.66619 -17.57220 -17.04022 -16.89701 -16.63329 -16.08915 -15.86242 -15.07878 -14.68498 -14.45538 -14.33813 -13.94198 -13.74115 -13.48198 -13.40964 -12.79719 -12.63728 -12.47588 -12.41307 -12.07590 -11.85969 -11.72824 -11.52750 -11.26249 -11.18309 -10.85196 -10.79708 -10.65469 -10.62784 -10.52423 -10.45175 -10.17972 -9.33509 -8.81674 -8.10382 -7.22107 -6.42129 -4.01322 1.97981 2.37518 2.41209 2.82008 3.15133 3.16470 3.18842 3.94466 3.98717 4.31993 4.47882 4.55718 4.66183 4.86193 4.88238 4.95612 5.10751 5.12434 5.18929 5.22346 5.32916 5.41532 5.49669 5.61838 5.63895 5.69347 5.74611 5.77229 5.92799 6.16931 6.33280 6.49174 6.66561 6.91044 7.07495 7.22958 7.23904 7.36605 7.44298 7.81259 7.93959 8.02547 9.03341 9.73535 10.75977 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026547 B = 0.002566 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.475404 B =10908.007753 C =11407.100551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.103 3.897 3 H 0.103 0.897 4 O -0.562 6.562 5 C -0.151 4.151 6 C 0.068 3.932 7 O -0.366 6.366 8 C 0.459 3.541 9 O -0.488 6.488 10 C -0.064 4.064 11 C -0.044 4.044 12 C -0.195 4.195 13 C -0.074 4.074 14 C -0.227 4.227 15 C 0.154 3.846 16 O -0.178 6.178 17 C -0.392 4.392 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.172 4.172 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.375 0.625 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.270 0.730 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.455 -8.792 -8.467 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.044 3.956 3 H 0.121 0.879 4 O -0.368 6.368 5 C -0.189 4.189 6 C -0.006 4.006 7 O -0.284 6.284 8 C 0.301 3.699 9 O -0.373 6.373 10 C -0.101 4.101 11 C -0.045 4.045 12 C -0.214 4.214 13 C -0.093 4.093 14 C -0.247 4.247 15 C 0.100 3.900 16 O -0.082 6.082 17 C -0.468 4.468 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.191 4.191 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.223 0.777 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -18.015 -7.590 -8.588 21.352 hybrid contribution 0.725 -0.423 0.050 0.841 sum -17.290 -8.014 -8.539 20.883 Atomic orbital electron populations 1.22474 0.95738 1.02781 1.03105 1.21871 0.93180 0.96954 0.83596 0.87946 1.86637 1.77152 1.29195 1.43796 1.22323 0.94077 1.02634 0.99845 1.22935 0.93973 0.97458 0.86240 1.86459 1.25593 1.70879 1.45479 1.23834 0.79999 0.78504 0.87592 1.90730 1.60099 1.40773 1.45699 1.20259 0.93317 1.01975 0.94561 1.18671 0.91589 0.95424 0.98772 1.20373 0.93728 1.00860 1.06423 1.20688 0.94266 0.96710 0.97604 1.21202 1.00638 0.97309 1.05524 1.19264 0.91990 0.87348 0.91369 1.83976 1.22684 1.35392 1.66119 1.21275 0.78347 1.13072 1.34117 0.89133 1.25282 1.00515 0.95087 0.95636 1.70028 1.36151 1.12682 1.31021 0.85782 0.80645 0.78240 0.78761 1.19511 1.20297 1.19509 1.19967 0.92448 0.99638 1.07095 0.91262 0.91498 0.92123 0.77721 0.90437 0.89723 0.91243 0.90642 0.87231 0.87086 0.87748 0.87314 0.85502 0.92001 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.93 9.54 37.16 0.35 -0.57 16 2 C 0.10 0.71 3.59 -26.73 -0.10 0.62 16 3 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 4 O -0.56 -4.62 12.88 -35.23 -0.45 -5.07 16 5 C -0.15 -1.12 5.27 -26.74 -0.14 -1.26 16 6 C 0.07 0.76 5.36 37.15 0.20 0.96 16 7 O -0.37 -4.74 10.22 -39.25 -0.40 -5.14 16 8 C 0.46 7.10 7.95 36.01 0.29 7.39 16 9 O -0.49 -9.54 15.78 -18.75 -0.30 -9.83 16 10 C -0.06 -0.88 5.94 -29.03 -0.17 -1.05 16 11 C -0.04 -0.81 4.37 -104.65 -0.46 -1.27 16 12 C -0.19 -3.51 9.70 -39.53 -0.38 -3.89 16 13 C -0.07 -1.42 10.04 -39.61 -0.40 -1.82 16 14 C -0.23 -5.12 9.17 -39.40 -0.36 -5.48 16 15 C 0.15 3.85 6.65 -39.11 -0.26 3.59 16 16 O -0.18 -5.21 9.76 0.05 0.00 -5.21 16 17 C -0.39 -11.16 9.49 30.89 0.29 -10.87 16 18 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.69 13.67 55.48 0.76 -24.93 16 21 Si 0.94 20.82 29.55 -169.99 -5.02 15.79 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 C -0.17 -3.77 9.65 -39.39 -0.38 -4.15 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.38 1.69 9.05 45.56 0.41 2.10 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 33 H 0.08 0.91 7.82 -51.93 -0.41 0.50 16 34 H 0.11 1.17 8.09 -51.93 -0.42 0.75 16 35 H 0.11 1.31 8.08 -51.93 -0.42 0.89 16 36 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.12 2.44 8.06 -52.49 -0.42 2.01 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -34.77 348.72 -6.54 -41.31 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.77 Total: 4.65 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -1.61 Total: -16.82 kcal Atomic # 7 Polarization: -25.69 SS G_CDS: 0.76 Total: -24.93 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -1.15 Total: -25.25 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.77 -6.54 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261586978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.831 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds