Wall clock time and date at job start Tue Mar 31 2020 07:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47085 * 2 1 4 4 O 1.42906 * 109.47198 * 240.00485 * 2 1 3 5 5 C 1.52997 * 109.47635 * 120.00272 * 2 1 3 6 6 C 1.52995 * 109.47477 * 184.99947 * 5 2 1 7 7 O 1.45208 * 109.47100 * 179.97438 * 6 5 2 8 8 C 1.34229 * 116.99784 * 180.02562 * 7 6 5 9 9 O 1.20830 * 119.99962 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99937 * 179.97438 * 8 7 6 11 11 C 1.50699 * 109.47208 * 180.02562 * 10 8 7 12 12 C 1.38328 * 119.96230 * 269.97915 * 11 10 8 13 13 C 1.38281 * 120.13505 * 180.02562 * 12 11 10 14 14 C 1.38120 * 120.06679 * 359.68445 * 13 12 11 15 15 C 1.38852 * 119.93490 * 0.58817 * 14 13 12 16 16 O 1.35752 * 120.07221 * 179.70368 * 15 14 13 17 17 C 1.34829 * 116.99954 * 354.17311 * 16 15 14 18 18 H 1.07998 * 119.99999 * 5.03596 * 17 16 15 19 19 C 1.38656 * 119.99670 * 185.03445 * 17 16 15 20 20 N 1.31550 * 120.00275 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99668 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47063 * 60.00398 * 21 19 17 23 23 H 1.48498 * 109.47240 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47319 * 300.00306 * 21 19 17 25 25 C 1.38073 * 119.96534 * 89.99715 * 11 10 8 26 26 H 1.08996 * 109.46739 * 299.99471 * 1 2 3 27 27 H 1.08990 * 109.47253 * 59.99799 * 1 2 3 28 28 H 1.09003 * 109.47085 * 179.97438 * 1 2 3 29 29 H 0.96703 * 113.99436 * 300.00253 * 4 2 1 30 30 H 1.09002 * 109.46891 * 64.99692 * 5 2 1 31 31 H 1.09003 * 109.47336 * 305.00372 * 5 2 1 32 32 H 1.09002 * 109.47268 * 59.99976 * 6 5 2 33 33 H 1.08998 * 109.47265 * 300.00051 * 6 5 2 34 34 H 1.09002 * 109.46571 * 59.99926 * 10 8 7 35 35 H 1.08992 * 109.46782 * 300.00190 * 10 8 7 36 36 H 1.08001 * 119.93314 * 0.02562 * 12 11 10 37 37 H 1.07993 * 119.96315 * 179.97438 * 13 12 11 38 38 H 1.08001 * 120.03256 * 180.31909 * 14 13 12 39 39 H 0.96999 * 119.99936 * 179.97438 * 20 19 17 40 40 H 1.07996 * 120.03547 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.0401 -0.7213 1.2491 6 6 3.5649 -0.6133 1.3135 7 8 4.0489 -1.2974 2.4994 8 6 5.3753 -1.2952 2.7054 9 8 6.1076 -0.7398 1.9211 10 6 5.9510 -1.9846 3.9156 11 6 7.4506 -1.8361 3.9124 12 6 8.2375 -2.7850 3.2848 13 6 9.6140 -2.6525 3.2801 14 6 10.2069 -1.5681 3.8969 15 6 9.4201 -0.6169 4.5327 16 8 10.0002 0.4467 5.1449 17 6 11.3471 0.4589 5.2047 18 1 11.9167 -0.3115 4.7062 19 6 12.0009 1.4605 5.9060 20 7 11.3071 2.3986 6.5135 21 14 13.8670 1.4769 5.9894 22 1 14.4229 1.5790 4.6162 23 1 14.3164 2.6416 6.7936 24 1 14.3452 0.2230 6.6251 25 6 8.0377 -0.7532 4.5362 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7210 -1.5951 -1.2330 30 1 1.7517 -1.7715 1.2054 31 1 1.6055 -0.2619 2.1370 32 1 3.8533 0.4370 1.3572 33 1 3.9995 -1.0728 0.4258 34 1 5.6902 -3.0427 3.8893 35 1 5.5434 -1.5323 4.8196 36 1 7.7759 -3.6310 2.7974 37 1 10.2257 -3.3951 2.7897 38 1 11.2817 -1.4625 3.8885 39 1 11.7645 3.0991 7.0045 40 1 7.4228 -0.0131 5.0266 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261586978.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:18 Heat of formation + Delta-G solvation = -177.222089 kcal Electronic energy + Delta-G solvation = -22432.674506 eV Core-core repulsion = 18790.970384 eV Total energy + Delta-G solvation = -3641.704122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.64804 -40.68719 -39.01604 -38.38414 -37.38297 -34.36995 -33.77176 -33.32050 -30.99388 -30.45915 -28.70893 -27.28750 -24.88198 -23.35974 -22.99170 -22.44008 -21.70229 -19.51695 -18.81038 -18.73253 -17.87199 -17.44946 -17.06802 -16.82050 -16.62998 -16.30702 -16.12065 -15.51037 -15.21063 -15.11173 -14.67054 -14.47256 -14.37166 -14.06401 -13.62468 -13.49330 -13.06733 -12.96744 -12.84505 -12.67615 -12.57544 -12.49966 -12.40525 -12.25376 -12.14396 -11.74783 -11.63144 -11.54329 -11.23100 -11.02519 -10.80588 -9.71261 -9.01508 -8.47686 -6.16484 0.41497 0.72259 1.19811 1.33917 1.44732 1.50595 1.70401 2.17376 2.82352 3.14541 3.38867 3.43996 3.66229 3.78448 3.86384 3.91897 4.07631 4.15115 4.28667 4.32194 4.35430 4.38024 4.45646 4.53978 4.60214 4.71450 4.76212 4.90024 4.94724 5.03516 5.11153 5.18600 5.26307 5.29415 5.43356 5.60955 5.68768 5.71445 6.01286 6.19864 6.75158 6.84297 6.96606 7.77410 8.75583 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026547 B = 0.002566 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.475404 B =10908.007753 C =11407.100551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.103 3.897 3 H 0.091 0.909 4 O -0.584 6.584 5 C -0.139 4.139 6 C 0.062 3.938 7 O -0.354 6.354 8 C 0.464 3.536 9 O -0.538 6.538 10 C -0.061 4.061 11 C -0.038 4.038 12 C -0.177 4.177 13 C -0.073 4.073 14 C -0.242 4.242 15 C 0.111 3.889 16 O -0.233 6.233 17 C -0.415 4.415 18 H 0.101 0.899 19 C -0.024 4.024 20 N -0.922 5.922 21 Si 1.020 2.980 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.190 4.190 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.390 0.610 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.157 0.843 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.120 0.880 39 H 0.273 0.727 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.860 -11.839 -9.421 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.044 3.956 3 H 0.109 0.891 4 O -0.393 6.393 5 C -0.177 4.177 6 C -0.011 4.011 7 O -0.271 6.271 8 C 0.308 3.692 9 O -0.427 6.427 10 C -0.098 4.098 11 C -0.038 4.038 12 C -0.195 4.195 13 C -0.091 4.091 14 C -0.262 4.262 15 C 0.061 3.939 16 O -0.140 6.140 17 C -0.491 4.491 18 H 0.119 0.881 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.839 3.161 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.179 1.179 25 C -0.209 4.209 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.240 0.760 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.174 0.826 35 H 0.151 0.849 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.137 0.863 39 H 0.082 0.918 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.482 -10.703 -9.563 24.198 hybrid contribution 0.884 0.301 0.178 0.951 sum -18.598 -10.402 -9.385 23.285 Atomic orbital electron populations 1.22407 0.93922 1.03753 1.03348 1.21882 0.94473 0.96247 0.83004 0.89146 1.86602 1.77719 1.30601 1.44337 1.22303 0.90913 1.03958 1.00491 1.23150 0.96485 0.96305 0.85181 1.86459 1.24105 1.70517 1.46025 1.24106 0.80452 0.77396 0.87217 1.90731 1.61309 1.43067 1.47607 1.20396 0.89806 1.04899 0.94676 1.19147 0.94537 0.93607 0.96528 1.21021 0.93325 1.01264 1.03905 1.21155 0.95533 0.95992 0.96413 1.21343 1.00372 0.98225 1.06212 1.19869 0.93566 0.87849 0.92660 1.83937 1.23116 1.38088 1.68884 1.21797 0.78815 1.13822 1.34703 0.88133 1.26624 1.06357 0.94293 0.94876 1.70180 1.38623 1.14089 1.33119 0.84634 0.73248 0.78897 0.79333 1.18318 1.19532 1.17935 1.20245 0.91460 1.01100 1.08133 0.90459 0.91831 0.90781 0.75973 0.88698 0.88714 0.92753 0.91593 0.82566 0.84903 0.83128 0.83420 0.86260 0.91820 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 9.54 71.98 0.69 -0.70 16 2 C 0.10 1.27 3.59 30.59 0.11 1.38 16 3 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 4 O -0.58 -8.85 12.88 -148.98 -1.92 -10.77 16 5 C -0.14 -1.75 5.27 30.59 0.16 -1.59 16 6 C 0.06 1.33 5.36 71.98 0.39 1.71 16 7 O -0.35 -8.30 10.22 -51.40 -0.53 -8.82 16 8 C 0.46 13.34 7.95 71.24 0.57 13.91 16 9 O -0.54 -20.68 15.78 21.95 0.35 -20.34 16 10 C -0.06 -1.46 5.94 29.10 0.17 -1.29 16 11 C -0.04 -1.31 4.37 -19.88 -0.09 -1.40 16 12 C -0.18 -5.67 9.70 22.30 0.22 -5.45 16 13 C -0.07 -2.60 10.04 22.25 0.22 -2.38 16 14 C -0.24 -11.04 9.17 22.39 0.21 -10.83 16 15 C 0.11 5.79 6.65 22.58 0.15 5.94 16 16 O -0.23 -14.61 9.76 -22.74 -0.22 -14.83 16 17 C -0.42 -24.96 9.49 67.92 0.64 -24.32 16 18 H 0.10 5.54 5.21 -2.91 -0.02 5.52 16 19 C -0.02 -1.42 5.49 84.83 0.47 -0.95 16 20 N -0.92 -57.93 13.67 21.61 0.30 -57.63 16 21 Si 1.02 43.84 29.55 68.60 2.03 45.87 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 24 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 25 C -0.19 -8.50 9.65 22.39 0.22 -8.29 16 26 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.39 2.79 9.05 -74.06 -0.67 2.12 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 33 H 0.07 1.53 7.82 -2.39 -0.02 1.51 16 34 H 0.16 2.36 8.09 -2.39 -0.02 2.34 16 35 H 0.13 2.68 8.08 -2.39 -0.02 2.67 16 36 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 37 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 38 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 39 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 40 H 0.11 4.85 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -82.24 348.72 4.51 -77.73 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.39 Total: 23.04 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 4.12 Total: -34.25 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.30 Total: -57.63 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -2.32 Total: -54.76 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -82.24 4.51 -77.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261586978.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.491 kcal (2) G-P(sol) polarization free energy of solvation -82.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds