Wall clock time and date at job start Tue Mar 31 2020 07:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42898 * 109.47440 * 2 1 4 4 C 1.42901 * 113.99929 * 184.98782 * 3 2 1 5 5 H 1.09006 * 109.47267 * 34.74661 * 4 3 2 6 6 C 1.50707 * 109.47102 * 154.74053 * 4 3 2 7 7 O 1.20824 * 119.99611 * 4.99603 * 6 4 3 8 8 O 1.34228 * 119.99939 * 185.00219 * 6 4 3 9 9 C 1.45206 * 116.99816 * 179.97438 * 8 6 4 10 10 H 1.08998 * 109.47015 * 29.99757 * 9 8 6 11 11 C 1.50693 * 109.46847 * 149.99922 * 9 8 6 12 12 H 1.08004 * 119.99744 * 95.32780 * 11 9 8 13 13 C 1.37883 * 120.00196 * 275.32061 * 11 9 8 14 14 N 1.31511 * 119.99904 * 185.24759 * 13 11 9 15 15 Si 1.86796 * 119.99703 * 5.24848 * 13 11 9 16 16 H 1.48499 * 109.47016 * 94.66323 * 15 13 11 17 17 H 1.48495 * 109.47024 * 214.66186 * 15 13 11 18 18 H 1.48499 * 109.47398 * 334.66260 * 15 13 11 19 19 C 1.50701 * 109.46818 * 269.99924 * 9 8 6 20 20 C 1.34510 * 125.78631 * 140.80567 * 19 9 8 21 21 C 1.41384 * 106.84194 * 179.88944 * 20 19 9 22 22 C 1.34512 * 106.83659 * 0.36774 * 21 20 19 23 23 O 1.34299 * 108.42397 * 359.77538 * 22 21 20 24 24 C 1.52999 * 109.47229 * 274.74149 * 4 3 2 25 25 C 1.52996 * 117.51805 * 105.58129 * 24 4 3 26 26 C 1.53000 * 60.00152 * 107.47745 * 25 24 4 27 27 H 1.09000 * 109.46803 * 300.00080 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99843 * 1 2 3 29 29 H 1.08998 * 109.47754 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46803 * 239.99920 * 2 1 3 31 31 H 1.09001 * 109.47194 * 120.00157 * 2 1 3 32 32 H 0.97000 * 119.99740 * 180.02562 * 14 13 11 33 33 H 1.08006 * 126.58287 * 0.02562 * 20 19 9 34 34 H 1.08002 * 126.58230 * 180.16707 * 21 20 19 35 35 H 1.08009 * 125.79020 * 179.75433 * 22 21 20 36 36 H 1.09000 * 115.54665 * 319.87342 * 24 4 3 37 37 H 1.09003 * 117.49835 * 214.97204 * 25 24 4 38 38 H 1.09002 * 117.49944 * 359.97438 * 25 24 4 39 39 H 1.09003 * 117.49826 * 252.50688 * 26 25 24 40 40 H 1.09000 * 117.51698 * 107.48214 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4262 1.4616 -0.1135 5 1 3.8047 0.6663 -0.7558 6 6 3.7762 2.7998 -0.7120 7 8 2.9071 3.6112 -0.9269 8 8 5.0532 3.0900 -1.0063 9 6 5.3165 4.3973 -1.5809 10 1 4.5788 5.1108 -1.2137 11 6 6.6969 4.8521 -1.1827 12 1 7.5330 4.6834 -1.8452 13 6 6.8924 5.4838 0.0272 14 7 8.0751 5.9725 0.3303 15 14 5.4773 5.6453 1.2358 16 1 5.5261 4.5237 2.2079 17 1 5.5918 6.9353 1.9624 18 1 4.1892 5.6053 0.4981 19 6 5.2292 4.3126 -3.0830 20 6 4.6910 5.2417 -3.8932 21 6 4.8231 4.7583 -5.2153 22 6 5.4268 3.5590 -5.1331 23 8 5.6704 3.2942 -3.8392 24 6 4.0601 1.3420 1.2739 25 6 4.7757 0.0330 1.6136 26 6 5.5876 1.3031 1.3516 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 8.2128 6.4165 1.1816 33 1 4.2456 6.1783 -3.5920 34 1 4.4985 5.2549 -6.1177 35 1 5.6735 2.9176 -5.9664 36 1 3.5278 1.8484 2.0791 37 1 4.7142 -0.3218 2.6424 38 1 4.7946 -0.7434 0.8488 39 1 6.1410 1.3622 0.4144 40 1 6.0604 1.7841 2.2079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263660382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:14 Heat of formation + Delta-G solvation = -88.049172 kcal Electronic energy + Delta-G solvation = -24601.825646 eV Core-core repulsion = 20963.988352 eV Total energy + Delta-G solvation = -3637.837294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83825 -39.90053 -38.14874 -36.35531 -35.56140 -33.11623 -32.29666 -31.48047 -30.56089 -27.90760 -26.93909 -23.08728 -22.89523 -22.12769 -21.67171 -21.07834 -20.12991 -19.45364 -17.55335 -17.42830 -16.80650 -16.40351 -16.02987 -15.69345 -15.17913 -15.03783 -14.77748 -14.43255 -13.90228 -13.58813 -13.00211 -12.67342 -12.53732 -12.44382 -12.19479 -12.12294 -12.08663 -11.80771 -11.45151 -11.33428 -11.21210 -11.11950 -11.00123 -10.45445 -10.25439 -10.01114 -9.74847 -9.70972 -9.63691 -9.37657 -9.23689 -8.95436 -7.75478 -6.50916 -4.60226 2.40962 2.85361 2.96277 3.16222 3.21964 3.30101 3.33755 3.74374 3.78708 4.12000 4.31870 4.76767 4.89495 4.98218 5.00827 5.09202 5.14946 5.24027 5.32227 5.37192 5.57815 5.60066 5.63684 5.66020 5.72870 5.85441 5.91851 6.04335 6.13097 6.25622 6.27051 6.43477 6.48888 6.56440 6.74138 7.08374 7.13282 7.16594 7.43095 7.88732 8.05197 8.57942 8.66378 9.05503 10.57005 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.007198 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.582878 B = 3889.218059 C = 5294.128957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.128 3.872 5 H 0.091 0.909 6 C 0.451 3.549 7 O -0.504 6.504 8 O -0.348 6.348 9 C 0.245 3.755 10 H 0.088 0.912 11 C -0.501 4.501 12 H 0.090 0.910 13 C 0.096 3.904 14 N -0.857 5.857 15 Si 0.859 3.141 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.248 1.248 19 C 0.032 3.968 20 C -0.227 4.227 21 C -0.210 4.210 22 C -0.071 4.071 23 O -0.168 6.168 24 C -0.185 4.185 25 C -0.177 4.177 26 C -0.153 4.153 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.275 0.725 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.193 0.807 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.456 -11.322 -0.977 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.068 3.932 5 H 0.109 0.891 6 C 0.293 3.707 7 O -0.392 6.392 8 O -0.266 6.266 9 C 0.194 3.806 10 H 0.106 0.894 11 C -0.536 4.536 12 H 0.108 0.892 13 C -0.114 4.114 14 N -0.492 5.492 15 Si 0.684 3.316 16 H -0.188 1.188 17 H -0.204 1.204 18 H -0.172 1.172 19 C -0.020 4.020 20 C -0.246 4.246 21 C -0.230 4.230 22 C -0.139 4.139 23 O -0.064 6.064 24 C -0.204 4.204 25 C -0.213 4.213 26 C -0.190 4.190 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.210 0.790 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.547 -11.034 -0.809 13.980 hybrid contribution -0.575 0.208 0.429 0.747 sum -9.122 -10.826 -0.380 14.162 Atomic orbital electron populations 1.21729 0.93645 1.01974 1.03363 1.22566 0.95619 0.83657 1.00265 1.88011 1.18942 1.26372 1.94301 1.21065 0.82526 0.94712 0.94879 0.89101 1.23171 0.83314 0.88417 0.75822 1.90593 1.49726 1.49058 1.49854 1.87144 1.25473 1.41856 1.72098 1.19945 0.99346 0.80746 0.80517 0.89429 1.20815 0.91898 1.35645 1.05279 0.89162 1.25054 0.96034 0.92958 0.97313 1.69866 1.22224 1.33793 1.23278 0.87056 0.83658 0.78770 0.82118 1.18764 1.20369 1.17229 1.23242 0.97127 0.87106 0.94491 1.21409 1.08574 1.02277 0.92332 1.21676 1.06191 0.97140 0.97960 1.23830 1.05951 0.99347 0.84771 1.84064 1.63881 1.41635 1.16790 1.22627 0.96877 1.03318 0.97535 1.23052 1.04854 0.91089 1.02350 1.23054 0.91946 0.99047 1.04976 0.91778 0.91764 0.91154 0.93356 0.92884 0.91458 0.83969 0.84190 0.78993 0.86925 0.88715 0.88812 0.86603 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.15 0.38 -1.16 16 2 C 0.06 0.67 6.49 37.15 0.24 0.92 16 3 O -0.36 -6.13 9.54 -55.14 -0.53 -6.65 16 4 C 0.13 2.23 2.81 -27.88 -0.08 2.15 16 5 H 0.09 1.38 7.59 -51.93 -0.39 0.99 16 6 C 0.45 10.02 7.23 36.01 0.26 10.28 16 7 O -0.50 -12.58 15.73 -25.46 -0.40 -12.98 16 8 O -0.35 -8.19 8.10 -41.46 -0.34 -8.53 16 9 C 0.25 6.16 1.74 -29.04 -0.05 6.11 16 10 H 0.09 2.30 4.66 -51.93 -0.24 2.05 16 11 C -0.50 -13.77 9.23 -34.44 -0.32 -14.08 16 12 H 0.09 2.69 8.05 -52.48 -0.42 2.26 16 13 C 0.10 2.61 5.47 -17.82 -0.10 2.52 16 14 N -0.86 -24.23 13.96 55.43 0.77 -23.46 16 15 Si 0.86 20.77 27.48 -169.99 -4.67 16.10 16 16 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.25 -6.17 5.91 56.52 0.33 -5.84 16 19 C 0.03 0.74 6.16 -35.63 -0.22 0.52 16 20 C -0.23 -4.82 10.80 -39.70 -0.43 -5.25 16 21 C -0.21 -3.77 10.91 -39.70 -0.43 -4.20 16 22 C -0.07 -1.26 12.09 29.42 0.36 -0.90 16 23 O -0.17 -3.69 10.65 4.01 0.04 -3.64 16 24 C -0.18 -2.94 5.28 -90.62 -0.48 -3.41 16 25 C -0.18 -2.18 10.18 -26.73 -0.27 -2.46 16 26 C -0.15 -2.43 9.59 -26.73 -0.26 -2.69 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.53 7.97 -51.93 -0.41 0.11 16 31 H 0.05 0.57 8.11 -51.93 -0.42 0.14 16 32 H 0.28 7.19 8.31 -40.82 -0.34 6.86 16 33 H 0.14 2.83 8.06 -52.48 -0.42 2.41 16 34 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 35 H 0.19 2.41 8.06 -52.48 -0.42 1.99 16 36 H 0.11 1.83 8.14 -51.93 -0.42 1.41 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 39 H 0.12 2.00 7.38 -51.93 -0.38 1.62 16 40 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -31.91 347.03 -6.99 -38.89 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.70 Total: 6.70 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -1.39 Total: -11.66 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.77 Total: -23.46 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.22 Total: -31.81 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.91 -6.99 -38.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.157 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds