Wall clock time and date at job start Tue Mar 31 2020 07:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42898 * 109.47440 * 2 1 4 4 C 1.42901 * 113.99929 * 184.98782 * 3 2 1 5 5 H 1.09006 * 109.47267 * 34.74661 * 4 3 2 6 6 C 1.50707 * 109.47102 * 154.74053 * 4 3 2 7 7 O 1.20824 * 119.99611 * 4.99603 * 6 4 3 8 8 O 1.34228 * 119.99939 * 185.00219 * 6 4 3 9 9 C 1.45206 * 116.99816 * 179.97438 * 8 6 4 10 10 H 1.08998 * 109.47015 * 29.99757 * 9 8 6 11 11 C 1.50693 * 109.46847 * 149.99922 * 9 8 6 12 12 H 1.08004 * 119.99744 * 95.32780 * 11 9 8 13 13 C 1.37883 * 120.00196 * 275.32061 * 11 9 8 14 14 N 1.31511 * 119.99904 * 185.24759 * 13 11 9 15 15 Si 1.86796 * 119.99703 * 5.24848 * 13 11 9 16 16 H 1.48499 * 109.47016 * 94.66323 * 15 13 11 17 17 H 1.48495 * 109.47024 * 214.66186 * 15 13 11 18 18 H 1.48499 * 109.47398 * 334.66260 * 15 13 11 19 19 C 1.50701 * 109.46818 * 269.99924 * 9 8 6 20 20 C 1.34510 * 125.78631 * 140.80567 * 19 9 8 21 21 C 1.41384 * 106.84194 * 179.88944 * 20 19 9 22 22 C 1.34512 * 106.83659 * 0.36774 * 21 20 19 23 23 O 1.34299 * 108.42397 * 359.77538 * 22 21 20 24 24 C 1.52999 * 109.47229 * 274.74149 * 4 3 2 25 25 C 1.52996 * 117.51805 * 105.58129 * 24 4 3 26 26 C 1.53000 * 60.00152 * 107.47745 * 25 24 4 27 27 H 1.09000 * 109.46803 * 300.00080 * 1 2 3 28 28 H 1.09001 * 109.47194 * 59.99843 * 1 2 3 29 29 H 1.08998 * 109.47754 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46803 * 239.99920 * 2 1 3 31 31 H 1.09001 * 109.47194 * 120.00157 * 2 1 3 32 32 H 0.97000 * 119.99740 * 180.02562 * 14 13 11 33 33 H 1.08006 * 126.58287 * 0.02562 * 20 19 9 34 34 H 1.08002 * 126.58230 * 180.16707 * 21 20 19 35 35 H 1.08009 * 125.79020 * 179.75433 * 22 21 20 36 36 H 1.09000 * 115.54665 * 319.87342 * 24 4 3 37 37 H 1.09003 * 117.49835 * 214.97204 * 25 24 4 38 38 H 1.09002 * 117.49944 * 359.97438 * 25 24 4 39 39 H 1.09003 * 117.49826 * 252.50688 * 26 25 24 40 40 H 1.09000 * 117.51698 * 107.48214 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4262 1.4616 -0.1135 5 1 3.8047 0.6663 -0.7558 6 6 3.7762 2.7998 -0.7120 7 8 2.9071 3.6112 -0.9269 8 8 5.0532 3.0900 -1.0063 9 6 5.3165 4.3973 -1.5809 10 1 4.5788 5.1108 -1.2137 11 6 6.6969 4.8521 -1.1827 12 1 7.5330 4.6834 -1.8452 13 6 6.8924 5.4838 0.0272 14 7 8.0751 5.9725 0.3303 15 14 5.4773 5.6453 1.2358 16 1 5.5261 4.5237 2.2079 17 1 5.5918 6.9353 1.9624 18 1 4.1892 5.6053 0.4981 19 6 5.2292 4.3126 -3.0830 20 6 4.6910 5.2417 -3.8932 21 6 4.8231 4.7583 -5.2153 22 6 5.4268 3.5590 -5.1331 23 8 5.6704 3.2942 -3.8392 24 6 4.0601 1.3420 1.2739 25 6 4.7757 0.0330 1.6136 26 6 5.5876 1.3031 1.3516 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 8.2128 6.4165 1.1816 33 1 4.2456 6.1783 -3.5920 34 1 4.4985 5.2549 -6.1177 35 1 5.6735 2.9176 -5.9664 36 1 3.5278 1.8484 2.0791 37 1 4.7142 -0.3218 2.6424 38 1 4.7946 -0.7434 0.8488 39 1 6.1410 1.3622 0.4144 40 1 6.0604 1.7841 2.2079 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263660382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:48:13 Heat of formation + Delta-G solvation = -106.696614 kcal Electronic energy + Delta-G solvation = -24602.634260 eV Core-core repulsion = 20963.988352 eV Total energy + Delta-G solvation = -3638.645908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.43911 -41.55822 -39.54062 -37.67451 -37.25764 -35.16798 -33.92589 -32.59861 -32.20256 -29.32912 -28.67118 -24.94985 -23.85508 -23.32267 -23.03747 -22.63024 -21.62763 -21.11505 -19.57184 -18.97493 -18.39449 -17.86525 -17.61860 -17.15205 -16.78322 -16.54098 -16.26680 -15.86547 -15.35569 -15.00910 -14.86078 -14.15112 -14.13586 -13.70823 -13.62143 -13.48506 -13.39460 -13.29147 -13.19190 -12.91159 -12.43644 -12.30783 -12.28171 -12.05891 -11.90892 -11.71645 -11.57506 -11.37597 -11.17891 -10.95399 -10.81105 -10.61754 -9.36268 -8.62726 -6.76747 0.80853 1.13161 1.17428 1.22653 1.32034 1.48755 1.77871 2.08207 2.20181 2.57870 2.76719 3.16668 3.55372 3.68695 3.73904 3.92769 4.00681 4.13450 4.16179 4.16570 4.24089 4.31973 4.39567 4.44225 4.49080 4.77544 4.81282 4.90077 4.95258 5.00832 5.01913 5.04191 5.13556 5.19938 5.25454 5.26828 5.57403 5.68497 5.97103 6.03386 6.28757 6.35169 6.86770 6.92510 8.50306 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.007198 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.582878 B = 3889.218059 C = 5294.128957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.386 6.386 4 C 0.139 3.861 5 H 0.116 0.884 6 C 0.442 3.558 7 O -0.538 6.538 8 O -0.350 6.350 9 C 0.255 3.745 10 H 0.071 0.929 11 C -0.514 4.514 12 H 0.054 0.946 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.909 3.091 16 H -0.249 1.249 17 H -0.263 1.263 18 H -0.264 1.264 19 C -0.018 4.018 20 C -0.231 4.231 21 C -0.215 4.215 22 C -0.055 4.055 23 O -0.189 6.189 24 C -0.202 4.202 25 C -0.127 4.127 26 C -0.180 4.180 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.282 0.718 33 H 0.145 0.855 34 H 0.181 0.819 35 H 0.247 0.753 36 H 0.106 0.894 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.868 -13.892 -1.351 17.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.305 6.305 4 C 0.080 3.920 5 H 0.134 0.866 6 C 0.286 3.714 7 O -0.429 6.429 8 O -0.267 6.267 9 C 0.203 3.797 10 H 0.088 0.912 11 C -0.550 4.550 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.531 5.531 15 Si 0.732 3.268 16 H -0.172 1.172 17 H -0.188 1.188 18 H -0.189 1.189 19 C -0.069 4.069 20 C -0.251 4.251 21 C -0.234 4.234 22 C -0.122 4.122 23 O -0.085 6.085 24 C -0.221 4.221 25 C -0.163 4.163 26 C -0.217 4.217 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.198 0.802 35 H 0.263 0.737 36 H 0.124 0.876 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.113 0.887 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.954 -13.620 -1.172 16.911 hybrid contribution -0.202 0.927 0.378 1.022 sum -10.156 -12.693 -0.794 16.275 Atomic orbital electron populations 1.21776 0.92507 1.03784 1.02451 1.22938 0.96571 0.81570 1.01974 1.87985 1.18348 1.29732 1.94476 1.21004 0.83480 0.91727 0.95834 0.86610 1.24232 0.82051 0.90182 0.74913 1.90562 1.50276 1.50729 1.51312 1.87028 1.26833 1.40594 1.72253 1.19453 0.97178 0.80843 0.82213 0.91202 1.20756 0.92176 1.36933 1.05099 0.92788 1.25596 0.97858 0.92555 0.98420 1.69929 1.23726 1.35192 1.24283 0.86295 0.80244 0.79830 0.80463 1.17247 1.18770 1.18894 1.22987 1.00672 0.89052 0.94145 1.21787 1.07348 1.01845 0.94107 1.22100 1.06238 0.97393 0.97680 1.24965 1.03337 0.99799 0.84057 1.84022 1.64355 1.41529 1.18623 1.22598 0.96320 1.06822 0.96371 1.23213 0.99053 0.89478 1.04594 1.22993 0.91888 1.02900 1.03940 0.92362 0.93040 0.87926 0.91878 0.90779 0.90786 0.83687 0.80214 0.73692 0.87610 0.86012 0.86381 0.88682 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 10.28 71.98 0.74 -1.96 16 2 C 0.04 0.96 6.49 71.98 0.47 1.43 16 3 O -0.39 -12.71 9.54 -129.95 -1.24 -13.95 16 4 C 0.14 4.70 2.81 29.85 0.08 4.78 16 5 H 0.12 3.26 7.59 -2.38 -0.02 3.25 16 6 C 0.44 20.00 7.23 71.24 0.52 20.51 16 7 O -0.54 -27.67 15.73 28.39 0.45 -27.23 16 8 O -0.35 -17.04 8.10 -49.28 -0.40 -17.44 16 9 C 0.26 13.41 1.74 29.10 0.05 13.47 16 10 H 0.07 3.87 4.66 -2.39 -0.01 3.86 16 11 C -0.51 -29.85 9.23 25.60 0.24 -29.62 16 12 H 0.05 3.44 8.05 -2.91 -0.02 3.42 16 13 C 0.06 3.51 5.47 84.66 0.46 3.97 16 14 N -0.90 -52.49 13.96 21.45 0.30 -52.19 16 15 Si 0.91 44.29 27.48 68.60 1.89 46.18 16 16 H -0.25 -11.41 7.11 99.48 0.71 -10.70 16 17 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.26 -13.49 5.91 99.48 0.59 -12.91 16 19 C -0.02 -0.87 6.16 24.83 0.15 -0.72 16 20 C -0.23 -9.93 10.80 22.19 0.24 -9.69 16 21 C -0.22 -7.25 10.91 22.19 0.24 -7.01 16 22 C -0.06 -1.80 12.09 66.97 0.81 -0.99 16 23 O -0.19 -8.28 10.65 -0.79 -0.01 -8.29 16 24 C -0.20 -6.11 5.28 -10.79 -0.06 -6.16 16 25 C -0.13 -2.67 10.18 30.59 0.31 -2.36 16 26 C -0.18 -5.57 9.59 30.59 0.29 -5.28 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.16 7.97 -2.39 -0.02 1.14 16 31 H 0.07 1.28 8.11 -2.39 -0.02 1.26 16 32 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 33 H 0.15 5.92 8.06 -2.91 -0.02 5.90 16 34 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.25 5.00 8.06 -2.91 -0.02 4.97 16 36 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.12 1.97 8.09 -2.39 -0.02 1.95 16 39 H 0.09 3.34 7.38 -2.39 -0.02 3.32 16 40 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -74.60 347.03 6.45 -68.15 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.92 Total: 24.41 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: 4.55 Total: -19.63 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.30 Total: -52.19 kcal Atomic # 8 Polarization: -65.71 SS G_CDS: -1.20 Total: -66.91 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.89 Total: 46.18 kcal Total: -74.60 6.45 -68.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.548 kcal (2) G-P(sol) polarization free energy of solvation -74.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds