Wall clock time and date at job start Tue Mar 31 2020 07:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46682 * 2 1 4 4 C 1.50697 * 109.47158 * 119.99851 * 2 1 3 5 5 H 1.08002 * 119.99253 * 120.00451 * 4 2 1 6 6 C 1.37871 * 120.00457 * 299.99880 * 4 2 1 7 7 N 1.31506 * 120.00164 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99713 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.46699 * 90.00284 * 8 6 4 10 10 H 1.48500 * 109.47121 * 210.00041 * 8 6 4 11 11 H 1.48495 * 109.47190 * 330.00137 * 8 6 4 12 12 C 1.50695 * 109.46821 * 240.00239 * 2 1 3 13 13 O 1.21288 * 120.00007 * 239.99794 * 12 2 1 14 14 N 1.34775 * 120.00134 * 59.99485 * 12 2 1 15 15 C 1.46509 * 119.99771 * 180.02562 * 14 12 2 16 16 C 1.53780 * 113.61244 * 155.00282 * 15 14 12 17 17 C 1.53781 * 87.08370 * 89.11281 * 16 15 14 18 18 N 1.46901 * 113.61443 * 139.97760 * 17 16 15 19 19 C 1.46905 * 110.99870 * 156.53183 * 18 17 16 20 20 C 1.52993 * 109.47039 * 180.02562 * 19 18 17 21 21 F 1.39897 * 109.47483 * 60.00096 * 20 19 18 22 22 F 1.39905 * 109.47451 * 180.02562 * 20 19 18 23 23 F 1.39906 * 109.47367 * 300.00055 * 20 19 18 24 24 C 1.53784 * 87.17203 * 25.39189 * 17 16 15 25 25 H 1.09002 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46913 * 299.99781 * 1 2 3 27 27 H 1.09001 * 109.47733 * 59.99912 * 1 2 3 28 28 H 0.97009 * 119.99968 * 179.97438 * 7 6 4 29 29 H 0.96992 * 120.00320 * 0.02562 * 14 12 2 30 30 H 1.08992 * 112.90875 * 23.74909 * 15 14 12 31 31 H 1.08999 * 113.61874 * 334.56698 * 16 15 14 32 32 H 1.09003 * 113.61663 * 203.66211 * 16 15 14 33 33 H 1.09002 * 113.61844 * 270.80342 * 17 16 15 34 34 H 1.00901 * 111.00067 * 280.48359 * 18 17 16 35 35 H 1.09001 * 109.46798 * 300.00327 * 19 18 17 36 36 H 1.08998 * 109.46961 * 60.00043 * 19 18 17 37 37 H 1.08990 * 113.61829 * 89.15728 * 24 17 16 38 38 H 1.09003 * 113.61510 * 220.06500 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 2.1382 -0.8590 3.5564 8 14 0.6248 1.2791 2.6541 9 1 -0.8027 0.8725 2.6999 10 1 0.9760 1.9951 3.9068 11 1 0.8470 2.1764 1.4920 12 6 2.0322 -0.7103 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7065 -0.2499 -2.4545 15 6 2.1944 -0.9409 -3.6508 16 6 1.3114 -0.7235 -4.8909 17 6 2.1726 0.5149 -5.1900 18 7 2.4779 0.6888 -6.6164 19 6 2.7895 2.0918 -6.9208 20 6 3.1007 2.2330 -8.4121 21 9 1.9901 1.8290 -9.1606 22 9 3.3981 3.5690 -8.7020 23 9 4.1994 1.4302 -8.7373 24 6 3.2985 -0.1710 -4.3982 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.9042 -0.5274 4.4375 29 1 1.1492 0.5389 -2.5436 30 1 2.4386 -1.9870 -3.4665 31 1 0.2744 -0.4870 -4.6526 32 1 1.4058 -1.5118 -5.6378 33 1 1.8029 1.4273 -4.7219 34 1 3.2311 0.0810 -6.9016 35 1 1.9334 2.7172 -6.6678 36 1 3.6546 2.4067 -6.3373 37 1 3.9372 -0.8078 -5.0101 38 1 3.8633 0.5110 -3.7626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001304342335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:27 Heat of formation + Delta-G solvation = -168.885848 kcal Electronic energy + Delta-G solvation = -23590.094105 eV Core-core repulsion = 19439.187480 eV Total energy + Delta-G solvation = -4150.906625 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.41436 -47.97491 -47.85517 -40.13349 -38.26214 -35.29621 -33.86137 -32.44439 -31.02467 -28.54648 -25.86126 -25.16775 -24.28699 -23.14552 -22.58610 -19.90034 -19.49475 -18.88419 -18.75098 -17.83925 -16.80779 -16.21052 -16.07448 -15.69492 -15.12189 -14.95135 -14.76286 -14.58914 -14.35920 -14.33288 -14.07251 -14.03841 -13.93663 -13.43162 -13.16676 -12.89449 -12.63788 -12.44690 -12.37617 -12.32442 -11.83102 -11.56811 -11.07693 -10.86778 -10.68275 -10.46140 -10.32398 -9.66890 -9.13452 -9.04797 -8.77263 -8.64107 -8.57301 -6.07826 -4.08414 2.33515 3.20613 3.21154 3.27165 3.33916 3.47704 3.49437 3.62569 3.66015 4.06871 4.34757 4.36157 4.43107 4.66188 4.76232 4.81769 4.83454 5.21697 5.39511 5.52161 5.63101 5.64937 5.81026 5.85676 6.04782 6.08035 6.28549 6.34699 6.40956 6.68127 6.69618 6.95230 7.12308 7.51036 8.05959 8.52054 9.03260 9.12615 9.50936 11.05178 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030315 B = 0.002825 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.406835 B = 9910.139524 C =10250.167030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.004 4.004 3 H 0.051 0.949 4 C -0.507 4.507 5 H 0.093 0.907 6 C 0.070 3.930 7 N -0.896 5.896 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.530 3.470 13 O -0.528 6.528 14 N -0.731 5.731 15 C 0.126 3.874 16 C -0.132 4.132 17 C 0.066 3.934 18 N -0.673 5.673 19 C 0.013 3.987 20 C 0.454 3.546 21 F -0.174 7.174 22 F -0.184 7.184 23 F -0.186 7.186 24 C -0.183 4.183 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.033 0.967 28 H 0.265 0.735 29 H 0.395 0.605 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.353 0.647 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 7.978 -23.768 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.069 0.931 4 C -0.545 4.545 5 H 0.111 0.889 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.319 3.681 13 O -0.402 6.402 14 N -0.384 5.384 15 C 0.019 3.981 16 C -0.171 4.171 17 C -0.043 4.043 18 N -0.304 5.304 19 C -0.118 4.118 20 C 0.400 3.600 21 F -0.155 7.155 22 F -0.166 7.166 23 F -0.167 7.167 24 C -0.223 4.223 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.228 0.772 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.173 0.827 35 H 0.136 0.864 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.227 7.291 -23.677 24.805 hybrid contribution 0.077 1.404 0.267 1.431 sum -1.151 8.695 -23.410 24.999 Atomic orbital electron populations 1.22119 0.97290 1.01573 0.99221 1.19309 0.93224 0.97489 0.92564 0.93094 1.20942 1.32170 1.14163 0.87247 0.88879 1.24985 0.95824 0.96575 0.95760 1.69881 1.45413 1.40173 0.97891 0.86905 0.80732 0.83773 0.77055 1.20493 1.22310 1.19319 1.21317 0.78704 0.84203 0.83893 1.90587 1.36984 1.26212 1.86387 1.45984 1.55107 1.32265 1.05083 1.21559 0.93894 0.98051 0.84606 1.23435 0.99132 0.97589 0.96906 1.23208 0.97438 0.98821 0.84830 1.60396 1.47144 1.03383 1.19507 1.23160 1.04790 0.94766 0.89068 1.20540 0.74370 0.73415 0.91687 1.93215 1.52739 1.90347 1.79217 1.93198 1.93393 1.35192 1.94808 1.93183 1.55385 1.73883 1.94286 1.24219 0.97637 1.00550 0.99929 0.92306 0.93290 0.94848 0.92532 0.77160 0.87845 0.90435 0.88465 0.87956 0.82668 0.86378 0.90294 0.89169 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.57 37.16 0.32 -2.54 16 2 C 0.00 -0.10 2.23 -92.93 -0.21 -0.30 16 3 H 0.05 1.11 7.20 -51.93 -0.37 0.74 16 4 C -0.51 -14.44 8.96 -34.44 -0.31 -14.75 16 5 H 0.09 3.03 7.00 -52.49 -0.37 2.67 16 6 C 0.07 2.01 5.45 -17.83 -0.10 1.91 16 7 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 8 Si 0.89 20.95 24.37 -169.99 -4.14 16.81 16 9 H -0.28 -6.37 6.87 56.52 0.39 -5.98 16 10 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.27 -5.85 6.53 56.52 0.37 -5.48 16 12 C 0.53 11.03 7.15 -10.99 -0.08 10.95 16 13 O -0.53 -13.21 15.06 5.55 0.08 -13.13 16 14 N -0.73 -10.76 5.15 -52.92 -0.27 -11.03 16 15 C 0.13 1.56 4.33 -67.02 -0.29 1.27 16 16 C -0.13 -1.19 7.63 -25.92 -0.20 -1.39 16 17 C 0.07 0.53 4.04 -66.90 -0.27 0.26 16 18 N -0.67 -4.92 6.54 -105.86 -0.69 -5.61 16 19 C 0.01 0.08 5.54 -3.82 -0.02 0.06 16 20 C 0.45 3.53 3.29 37.15 0.12 3.65 16 21 F -0.17 -1.62 17.24 2.25 0.04 -1.58 16 22 F -0.18 -1.54 17.32 2.25 0.04 -1.50 16 23 F -0.19 -1.60 16.79 2.25 0.04 -1.56 16 24 C -0.18 -1.81 7.51 -25.82 -0.19 -2.01 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 27 H 0.03 0.51 7.56 -51.93 -0.39 0.12 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.39 4.72 8.12 -40.82 -0.33 4.39 16 30 H 0.10 1.51 7.47 -51.93 -0.39 1.13 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.76 7.88 -51.93 -0.41 0.35 16 34 H 0.35 2.46 7.73 -39.29 -0.30 2.16 16 35 H 0.12 0.62 8.13 -51.93 -0.42 0.20 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.79 7.83 -51.93 -0.41 0.39 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -33.06 322.82 -5.35 -38.42 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -4.86 Total: 3.90 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.22 Total: -2.88 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.19 Total: -43.34 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.12 Total: -4.64 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.14 Total: 16.81 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.06 -5.35 -38.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001304342335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.469 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds