Wall clock time and date at job start Tue Mar 31 2020 07:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46682 * 2 1 4 4 C 1.50697 * 109.47158 * 119.99851 * 2 1 3 5 5 H 1.08002 * 119.99253 * 120.00451 * 4 2 1 6 6 C 1.37871 * 120.00457 * 299.99880 * 4 2 1 7 7 N 1.31506 * 120.00164 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99713 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.46699 * 90.00284 * 8 6 4 10 10 H 1.48500 * 109.47121 * 210.00041 * 8 6 4 11 11 H 1.48495 * 109.47190 * 330.00137 * 8 6 4 12 12 C 1.50695 * 109.46821 * 240.00239 * 2 1 3 13 13 O 1.21288 * 120.00007 * 239.99794 * 12 2 1 14 14 N 1.34775 * 120.00134 * 59.99485 * 12 2 1 15 15 C 1.46509 * 119.99771 * 180.02562 * 14 12 2 16 16 C 1.53780 * 113.61244 * 155.00282 * 15 14 12 17 17 C 1.53781 * 87.08370 * 89.11281 * 16 15 14 18 18 N 1.46901 * 113.61443 * 139.97760 * 17 16 15 19 19 C 1.46905 * 110.99870 * 156.53183 * 18 17 16 20 20 C 1.52993 * 109.47039 * 180.02562 * 19 18 17 21 21 F 1.39897 * 109.47483 * 60.00096 * 20 19 18 22 22 F 1.39905 * 109.47451 * 180.02562 * 20 19 18 23 23 F 1.39906 * 109.47367 * 300.00055 * 20 19 18 24 24 C 1.53784 * 87.17203 * 25.39189 * 17 16 15 25 25 H 1.09002 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46913 * 299.99781 * 1 2 3 27 27 H 1.09001 * 109.47733 * 59.99912 * 1 2 3 28 28 H 0.97009 * 119.99968 * 179.97438 * 7 6 4 29 29 H 0.96992 * 120.00320 * 0.02562 * 14 12 2 30 30 H 1.08992 * 112.90875 * 23.74909 * 15 14 12 31 31 H 1.08999 * 113.61874 * 334.56698 * 16 15 14 32 32 H 1.09003 * 113.61663 * 203.66211 * 16 15 14 33 33 H 1.09002 * 113.61844 * 270.80342 * 17 16 15 34 34 H 1.00901 * 111.00067 * 280.48359 * 18 17 16 35 35 H 1.09001 * 109.46798 * 300.00327 * 19 18 17 36 36 H 1.08998 * 109.46961 * 60.00043 * 19 18 17 37 37 H 1.08990 * 113.61829 * 89.15728 * 24 17 16 38 38 H 1.09003 * 113.61510 * 220.06500 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 2.1382 -0.8590 3.5564 8 14 0.6248 1.2791 2.6541 9 1 -0.8027 0.8725 2.6999 10 1 0.9760 1.9951 3.9068 11 1 0.8470 2.1764 1.4920 12 6 2.0322 -0.7103 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7065 -0.2499 -2.4545 15 6 2.1944 -0.9409 -3.6508 16 6 1.3114 -0.7235 -4.8909 17 6 2.1726 0.5149 -5.1900 18 7 2.4779 0.6888 -6.6164 19 6 2.7895 2.0918 -6.9208 20 6 3.1007 2.2330 -8.4121 21 9 1.9901 1.8290 -9.1606 22 9 3.3981 3.5690 -8.7020 23 9 4.1994 1.4302 -8.7373 24 6 3.2985 -0.1710 -4.3982 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.9042 -0.5274 4.4375 29 1 1.1492 0.5389 -2.5436 30 1 2.4386 -1.9870 -3.4665 31 1 0.2744 -0.4870 -4.6526 32 1 1.4058 -1.5118 -5.6378 33 1 1.8029 1.4273 -4.7219 34 1 3.2311 0.0810 -6.9016 35 1 1.9334 2.7172 -6.6678 36 1 3.6546 2.4067 -6.3373 37 1 3.9372 -0.8078 -5.0101 38 1 3.8633 0.5110 -3.7626 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001304342335.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:27 Heat of formation + Delta-G solvation = -195.181684 kcal Electronic energy + Delta-G solvation = -23591.234378 eV Core-core repulsion = 19439.187480 eV Total energy + Delta-G solvation = -4152.046898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.03198 -48.59279 -48.49643 -41.24317 -39.58312 -36.09952 -35.77145 -33.93700 -32.76715 -29.21244 -27.09803 -26.63237 -25.50580 -24.06578 -23.53792 -21.31868 -20.56475 -19.49860 -19.38661 -18.78860 -18.46186 -17.74115 -17.23158 -16.49432 -16.27391 -16.11924 -15.86268 -15.48330 -15.35543 -15.05042 -14.96604 -14.81853 -14.69260 -14.68090 -14.57557 -14.06210 -13.88823 -13.51325 -13.44314 -13.28593 -13.10673 -12.77505 -12.56727 -12.41807 -12.10604 -11.73721 -11.46550 -11.33115 -11.19630 -10.76878 -10.45081 -9.95145 -9.57196 -8.26177 -6.34385 1.34763 1.41348 1.52804 1.77478 1.86807 2.33782 2.36474 2.63497 2.94652 3.07784 3.10865 3.44007 3.58631 3.72900 3.94630 4.03923 4.14491 4.26961 4.38406 4.44725 4.58796 4.63878 4.77008 4.80286 4.90290 4.95197 5.02965 5.10759 5.14950 5.47865 5.54962 5.61636 5.84535 6.13587 6.27742 6.70850 6.88048 7.27634 7.54272 8.91793 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030315 B = 0.002825 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.406835 B = 9910.139524 C =10250.167030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.008 4.008 3 H 0.071 0.929 4 C -0.523 4.523 5 H 0.027 0.973 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.962 3.038 9 H -0.261 1.261 10 H -0.302 1.302 11 H -0.227 1.227 12 C 0.529 3.471 13 O -0.586 6.586 14 N -0.703 5.703 15 C 0.105 3.895 16 C -0.116 4.116 17 C 0.085 3.915 18 N -0.676 5.676 19 C 0.017 3.983 20 C 0.454 3.546 21 F -0.184 7.184 22 F -0.188 7.188 23 F -0.193 7.193 24 C -0.178 4.178 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.267 0.733 29 H 0.414 0.586 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.119 0.881 34 H 0.355 0.645 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 11.104 -26.086 28.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 H 0.089 0.911 4 C -0.561 4.561 5 H 0.045 0.955 6 C -0.192 4.192 7 N -0.595 5.595 8 Si 0.787 3.213 9 H -0.187 1.187 10 H -0.230 1.230 11 H -0.150 1.150 12 C 0.317 3.683 13 O -0.465 6.465 14 N -0.356 5.356 15 C -0.001 4.001 16 C -0.155 4.155 17 C -0.025 4.025 18 N -0.308 5.308 19 C -0.114 4.114 20 C 0.399 3.601 21 F -0.166 7.166 22 F -0.170 7.170 23 F -0.174 7.174 24 C -0.218 4.218 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.252 0.748 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.137 0.863 34 H 0.176 0.824 35 H 0.153 0.847 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.376 10.452 -26.087 28.305 hybrid contribution 0.848 0.316 0.910 1.283 sum -2.528 10.768 -25.177 27.500 Atomic orbital electron populations 1.22023 0.94342 1.01630 1.01687 1.19263 0.95477 0.97475 0.90788 0.91131 1.21141 1.31608 1.12835 0.90565 0.95465 1.26081 0.97515 1.00858 0.94781 1.70089 1.47763 1.42931 0.98768 0.85671 0.78665 0.78891 0.78082 1.18669 1.22989 1.14957 1.21064 0.78288 0.83471 0.85428 1.90576 1.39779 1.28790 1.87344 1.45580 1.53925 1.32223 1.03876 1.21789 0.96912 0.96665 0.84749 1.23356 0.99196 0.98391 0.94574 1.23065 0.95534 0.98851 0.85049 1.60349 1.47532 1.04192 1.18697 1.23236 1.06135 0.94261 0.87741 1.20795 0.73843 0.73034 0.92399 1.93195 1.53247 1.90443 1.79680 1.93190 1.93399 1.35490 1.94918 1.93171 1.55752 1.74079 1.94438 1.24207 0.97640 1.00262 0.99710 0.93684 0.93711 0.89214 0.92443 0.74844 0.90984 0.89330 0.87689 0.86269 0.82438 0.84722 0.88936 0.88256 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 8.57 71.98 0.62 -4.41 16 2 C -0.01 -0.37 2.23 -12.29 -0.03 -0.40 16 3 H 0.07 2.85 7.20 -2.38 -0.02 2.83 16 4 C -0.52 -30.99 8.96 25.60 0.23 -30.77 16 5 H 0.03 1.92 7.00 -2.91 -0.02 1.90 16 6 C 0.00 0.22 5.45 84.65 0.46 0.68 16 7 N -0.96 -61.29 13.96 21.44 0.30 -60.99 16 8 Si 0.96 42.21 24.37 68.60 1.67 43.88 16 9 H -0.26 -10.70 6.87 99.48 0.68 -10.02 16 10 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 11 H -0.23 -8.39 6.53 99.48 0.65 -7.74 16 12 C 0.53 21.98 7.15 87.66 0.63 22.61 16 13 O -0.59 -30.93 15.06 -3.05 -0.05 -30.97 16 14 N -0.70 -19.13 5.15 -439.74 -2.27 -21.39 16 15 C 0.11 2.45 4.33 45.58 0.20 2.65 16 16 C -0.12 -1.72 7.63 31.12 0.24 -1.48 16 17 C 0.08 1.03 4.04 45.44 0.18 1.21 16 18 N -0.68 -7.51 6.54 -488.84 -3.20 -10.70 16 19 C 0.02 0.15 5.54 86.30 0.48 0.63 16 20 C 0.45 5.96 3.29 71.98 0.24 6.20 16 21 F -0.18 -3.04 17.24 44.97 0.78 -2.26 16 22 F -0.19 -2.74 17.32 44.97 0.78 -1.97 16 23 F -0.19 -2.95 16.79 44.97 0.75 -2.20 16 24 C -0.18 -3.15 7.51 31.18 0.23 -2.92 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.04 1.66 3.27 -2.39 -0.01 1.65 16 27 H 0.09 2.22 7.56 -2.39 -0.02 2.20 16 28 H 0.27 15.83 8.31 -92.70 -0.77 15.06 16 29 H 0.41 8.02 8.12 -92.71 -0.75 7.27 16 30 H 0.07 2.16 7.47 -2.39 -0.02 2.15 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.12 1.13 7.88 -2.39 -0.02 1.11 16 34 H 0.36 3.90 7.73 -89.69 -0.69 3.21 16 35 H 0.13 0.80 8.13 -2.39 -0.02 0.78 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 1.58 7.83 -2.39 -0.02 1.56 16 38 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -79.04 322.82 1.83 -77.21 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -0.41 Total: 15.40 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 3.47 Total: -6.00 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -5.16 Total: -93.09 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.05 Total: -30.97 kcal Atomic # 9 Polarization: -8.73 SS G_CDS: 2.31 Total: -6.42 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.67 Total: 43.88 kcal Total: -79.04 1.83 -77.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001304342335.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.974 kcal (2) G-P(sol) polarization free energy of solvation -79.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds