Wall clock time and date at job start Tue Mar 31 2020 07:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46701 * 2 1 4 4 C 1.50692 * 109.47515 * 239.99519 * 2 1 3 5 5 O 1.21279 * 120.00230 * 246.31070 * 4 2 1 6 6 N 1.34781 * 119.99640 * 66.57842 * 4 2 1 7 7 C 1.46498 * 120.00080 * 5.91584 * 6 4 2 8 8 C 1.46506 * 119.99867 * 185.91499 * 6 4 2 9 9 C 1.52991 * 109.47277 * 95.23688 * 8 6 4 10 10 H 1.09004 * 112.96071 * 67.10787 * 9 8 6 11 11 C 1.53938 * 113.77431 * 295.43065 * 9 8 6 12 12 C 1.53947 * 86.29101 * 222.08859 * 11 9 8 13 13 N 1.47583 * 113.77105 * 198.78378 * 9 8 6 14 14 C 1.36933 * 134.49414 * 318.93499 * 13 9 8 15 15 H 1.08002 * 119.99812 * 6.36898 * 14 13 9 16 16 C 1.38806 * 120.00409 * 186.37062 * 14 13 9 17 17 N 1.31625 * 119.99856 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47051 * 60.00210 * 18 16 14 20 20 H 1.48503 * 109.47108 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46840 * 300.00182 * 18 16 14 22 22 C 1.53005 * 109.47123 * 119.99146 * 2 1 3 23 23 F 1.39900 * 109.46819 * 180.02562 * 22 2 1 24 24 F 1.39899 * 109.47444 * 300.00503 * 22 2 1 25 25 F 1.39903 * 109.46892 * 60.00334 * 22 2 1 26 26 H 1.09003 * 109.46846 * 186.54959 * 1 2 3 27 27 H 1.08999 * 109.47472 * 306.54555 * 1 2 3 28 28 H 1.08997 * 109.47189 * 66.54891 * 1 2 3 29 29 H 1.08993 * 109.47179 * 86.53071 * 7 6 4 30 30 H 1.09005 * 109.46677 * 206.52316 * 7 6 4 31 31 H 1.08991 * 109.47052 * 326.52094 * 7 6 4 32 32 H 1.08996 * 109.47160 * 215.24416 * 8 6 4 33 33 H 1.09006 * 109.47111 * 335.23670 * 8 6 4 34 34 H 1.09000 * 113.74185 * 336.43261 * 11 9 8 35 35 H 1.09004 * 113.74498 * 107.63945 * 11 9 8 36 36 H 1.09010 * 113.76869 * 137.90763 * 12 11 9 37 37 H 1.08993 * 113.77273 * 269.18898 * 12 11 9 38 38 H 0.97000 * 119.99988 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.6324 -1.7589 -1.1226 6 7 1.8196 -0.1779 -2.4500 7 6 1.2163 1.1513 -2.5739 8 6 2.1917 -0.9284 -3.6520 9 6 0.9714 -1.6867 -4.1780 10 1 0.1909 -1.0264 -4.5560 11 6 0.4540 -2.7725 -3.2172 12 6 0.2836 -3.6556 -4.4666 13 7 1.3084 -2.7943 -5.0932 14 6 2.2088 -2.9573 -6.1119 15 1 2.9373 -2.1869 -6.3171 16 6 2.1852 -4.1127 -6.8810 17 7 1.2970 -5.0514 -6.6313 18 14 3.4139 -4.3353 -8.2702 19 1 4.7934 -4.2977 -7.7217 20 1 3.1807 -5.6439 -8.9324 21 1 3.2449 -3.2417 -9.2605 22 6 2.0400 -0.7211 1.2494 23 9 3.4390 -0.7205 1.2496 24 9 1.5736 -0.0615 2.3916 25 9 1.5737 -2.0401 1.2495 26 1 -0.3633 -1.0210 0.1172 27 1 -0.3634 0.6119 0.8256 28 1 -0.3633 0.4090 -0.9427 29 1 1.9961 1.9107 -2.5196 30 1 0.7002 1.2282 -3.5310 31 1 0.5035 1.3037 -1.7635 32 1 2.5473 -0.2374 -4.4162 33 1 2.9825 -1.6376 -3.4073 34 1 1.2087 -3.1382 -2.5209 35 1 -0.4856 -2.5146 -2.7285 36 1 0.6038 -4.6876 -4.3222 37 1 -0.6999 -3.5764 -4.9298 38 1 1.2802 -5.8586 -7.1689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316599839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:44 Heat of formation + Delta-G solvation = -123.836971 kcal Electronic energy + Delta-G solvation = -25213.038991 eV Core-core repulsion = 21064.085832 eV Total energy + Delta-G solvation = -4148.953159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.12485 -47.65827 -47.50631 -40.17373 -37.76109 -35.48879 -34.12162 -32.10449 -28.59606 -27.80286 -26.99540 -26.32530 -23.73838 -23.21415 -22.02331 -19.63462 -18.97633 -18.69886 -18.38836 -17.47112 -16.92783 -16.43584 -15.76188 -15.67818 -14.75541 -14.57967 -14.51310 -14.14105 -14.07702 -13.95361 -13.77246 -13.68427 -13.65439 -13.47656 -12.94737 -12.64752 -12.48523 -12.31628 -12.16678 -11.89815 -11.49391 -11.33728 -11.01706 -10.87720 -10.67792 -10.44098 -9.90697 -9.82268 -9.68917 -9.45677 -8.76710 -8.43888 -6.83087 -5.73073 -3.05135 2.44980 2.50166 2.98193 3.41961 3.46047 3.47386 3.57643 3.89463 3.91940 4.42668 4.50379 4.61362 4.71592 4.86224 5.13193 5.23273 5.27289 5.28561 5.46405 5.50552 5.55667 5.79162 5.85077 5.91704 6.09113 6.35590 6.49582 6.62678 6.74472 6.78953 7.29085 7.34407 7.52826 7.63048 8.01772 8.10797 9.07751 9.74924 10.65390 11.44687 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.004030 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.276915 B = 6946.415894 C = 7029.238607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.162 4.162 3 H 0.133 0.867 4 C 0.520 3.480 5 O -0.510 6.510 6 N -0.601 5.601 7 C 0.061 3.939 8 C 0.114 3.886 9 C 0.128 3.872 10 H 0.041 0.959 11 C -0.160 4.160 12 C 0.166 3.834 13 N -0.599 5.599 14 C -0.225 4.225 15 H 0.078 0.922 16 C -0.005 4.005 17 N -0.919 5.919 18 Si 0.909 3.091 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.473 3.527 23 F -0.176 7.176 24 F -0.185 7.185 25 F -0.167 7.167 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.027 0.973 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.290 15.184 14.802 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.185 4.185 3 H 0.151 0.849 4 C 0.304 3.696 5 O -0.384 6.384 6 N -0.334 5.334 7 C -0.082 4.082 8 C -0.009 4.009 9 C 0.020 3.980 10 H 0.058 0.942 11 C -0.198 4.198 12 C 0.041 3.959 13 N -0.326 5.326 14 C -0.353 4.353 15 H 0.095 0.905 16 C -0.202 4.202 17 N -0.566 5.566 18 Si 0.740 3.260 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.418 3.582 23 F -0.157 7.157 24 F -0.166 7.166 25 F -0.149 7.149 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.794 14.395 14.581 20.679 hybrid contribution 0.595 -0.016 -0.806 1.002 sum -2.199 14.379 13.775 20.033 Atomic orbital electron populations 1.22032 0.89326 1.05199 1.04929 1.22634 1.01416 1.02746 0.91723 0.84896 1.19625 0.80336 0.85618 0.83985 1.90839 1.39568 1.22338 1.85661 1.47632 1.61828 1.18112 1.05843 1.22145 0.98419 0.83562 1.04041 1.21918 0.99502 0.95479 0.83951 1.22503 0.93567 0.91411 0.90516 0.94151 1.23816 0.99426 0.98744 0.97830 1.22121 0.91090 0.96068 0.86657 1.45981 1.39365 1.09092 1.38127 1.18920 1.07393 1.02729 1.06228 0.90459 1.24795 0.98927 0.97191 0.99292 1.69828 1.36635 1.08520 1.41612 0.86247 0.80737 0.77005 0.82048 1.21063 1.21573 1.21228 1.19782 0.75875 0.78140 0.84415 1.93212 1.29423 1.96389 1.96667 1.93169 1.88607 1.80931 1.53918 1.93231 1.88177 1.36846 1.96602 0.90182 0.90074 0.88856 0.92447 0.90161 0.90437 0.91152 0.88566 0.89848 0.93851 0.91698 0.95529 0.93613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 8.54 37.16 0.32 -0.91 16 2 C -0.16 -1.64 1.89 -91.77 -0.17 -1.81 16 3 H 0.13 0.91 7.77 -51.93 -0.40 0.51 16 4 C 0.52 7.46 6.22 -10.99 -0.07 7.40 16 5 O -0.51 -9.72 13.13 5.56 0.07 -9.65 16 6 N -0.60 -7.98 2.79 -181.58 -0.51 -8.49 16 7 C 0.06 0.51 9.83 59.85 0.59 1.10 16 8 C 0.11 1.98 5.43 -4.04 -0.02 1.96 16 9 C 0.13 2.56 4.58 -66.87 -0.31 2.25 16 10 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 11 C -0.16 -3.22 7.26 -25.80 -0.19 -3.41 16 12 C 0.17 4.06 7.38 -2.85 -0.02 4.04 16 13 N -0.60 -15.41 3.58 -169.74 -0.61 -16.02 16 14 C -0.23 -6.30 10.51 -15.06 -0.16 -6.46 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 17 N -0.92 -27.80 11.58 55.49 0.64 -27.16 16 18 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 C 0.47 5.83 2.43 37.16 0.09 5.92 16 23 F -0.18 -2.49 16.55 2.25 0.04 -2.45 16 24 F -0.18 -1.98 16.92 2.25 0.04 -1.94 16 25 F -0.17 -2.47 15.63 2.25 0.04 -2.43 16 26 H 0.08 0.75 7.62 -51.93 -0.40 0.35 16 27 H 0.08 0.46 7.99 -51.93 -0.41 0.04 16 28 H 0.09 0.61 5.33 -51.93 -0.28 0.33 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.66 8.05 -51.93 -0.42 0.24 16 31 H 0.08 0.45 4.21 -51.93 -0.22 0.23 16 32 H 0.07 1.14 8.11 -51.93 -0.42 0.72 16 33 H 0.10 2.01 7.21 -51.93 -0.37 1.63 16 34 H 0.08 1.82 6.84 -51.93 -0.36 1.47 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.76 7.48 -51.92 -0.39 1.37 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 319.92 15.07 4.82 4.82 Total: -1.00 -33.92 319.92 -5.43 -39.35 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.90 Total: -3.20 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.04 Total: 9.83 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.47 Total: -51.67 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.11 Total: -6.83 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.92 -5.43 -39.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316599839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.487 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds