Wall clock time and date at job start Tue Mar 31 2020 07:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46701 * 2 1 4 4 C 1.50692 * 109.47515 * 239.99519 * 2 1 3 5 5 O 1.21279 * 120.00230 * 246.31070 * 4 2 1 6 6 N 1.34781 * 119.99640 * 66.57842 * 4 2 1 7 7 C 1.46498 * 120.00080 * 5.91584 * 6 4 2 8 8 C 1.46506 * 119.99867 * 185.91499 * 6 4 2 9 9 C 1.52991 * 109.47277 * 95.23688 * 8 6 4 10 10 H 1.09004 * 112.96071 * 67.10787 * 9 8 6 11 11 C 1.53938 * 113.77431 * 295.43065 * 9 8 6 12 12 C 1.53947 * 86.29101 * 222.08859 * 11 9 8 13 13 N 1.47583 * 113.77105 * 198.78378 * 9 8 6 14 14 C 1.36933 * 134.49414 * 318.93499 * 13 9 8 15 15 H 1.08002 * 119.99812 * 6.36898 * 14 13 9 16 16 C 1.38806 * 120.00409 * 186.37062 * 14 13 9 17 17 N 1.31625 * 119.99856 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47051 * 60.00210 * 18 16 14 20 20 H 1.48503 * 109.47108 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46840 * 300.00182 * 18 16 14 22 22 C 1.53005 * 109.47123 * 119.99146 * 2 1 3 23 23 F 1.39900 * 109.46819 * 180.02562 * 22 2 1 24 24 F 1.39899 * 109.47444 * 300.00503 * 22 2 1 25 25 F 1.39903 * 109.46892 * 60.00334 * 22 2 1 26 26 H 1.09003 * 109.46846 * 186.54959 * 1 2 3 27 27 H 1.08999 * 109.47472 * 306.54555 * 1 2 3 28 28 H 1.08997 * 109.47189 * 66.54891 * 1 2 3 29 29 H 1.08993 * 109.47179 * 86.53071 * 7 6 4 30 30 H 1.09005 * 109.46677 * 206.52316 * 7 6 4 31 31 H 1.08991 * 109.47052 * 326.52094 * 7 6 4 32 32 H 1.08996 * 109.47160 * 215.24416 * 8 6 4 33 33 H 1.09006 * 109.47111 * 335.23670 * 8 6 4 34 34 H 1.09000 * 113.74185 * 336.43261 * 11 9 8 35 35 H 1.09004 * 113.74498 * 107.63945 * 11 9 8 36 36 H 1.09010 * 113.76869 * 137.90763 * 12 11 9 37 37 H 1.08993 * 113.77273 * 269.18898 * 12 11 9 38 38 H 0.97000 * 119.99988 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.6324 -1.7589 -1.1226 6 7 1.8196 -0.1779 -2.4500 7 6 1.2163 1.1513 -2.5739 8 6 2.1917 -0.9284 -3.6520 9 6 0.9714 -1.6867 -4.1780 10 1 0.1909 -1.0264 -4.5560 11 6 0.4540 -2.7725 -3.2172 12 6 0.2836 -3.6556 -4.4666 13 7 1.3084 -2.7943 -5.0932 14 6 2.2088 -2.9573 -6.1119 15 1 2.9373 -2.1869 -6.3171 16 6 2.1852 -4.1127 -6.8810 17 7 1.2970 -5.0514 -6.6313 18 14 3.4139 -4.3353 -8.2702 19 1 4.7934 -4.2977 -7.7217 20 1 3.1807 -5.6439 -8.9324 21 1 3.2449 -3.2417 -9.2605 22 6 2.0400 -0.7211 1.2494 23 9 3.4390 -0.7205 1.2496 24 9 1.5736 -0.0615 2.3916 25 9 1.5737 -2.0401 1.2495 26 1 -0.3633 -1.0210 0.1172 27 1 -0.3634 0.6119 0.8256 28 1 -0.3633 0.4090 -0.9427 29 1 1.9961 1.9107 -2.5196 30 1 0.7002 1.2282 -3.5310 31 1 0.5035 1.3037 -1.7635 32 1 2.5473 -0.2374 -4.4162 33 1 2.9825 -1.6376 -3.4073 34 1 1.2087 -3.1382 -2.5209 35 1 -0.4856 -2.5146 -2.7285 36 1 0.6038 -4.6876 -4.3222 37 1 -0.6999 -3.5764 -4.9298 38 1 1.2802 -5.8586 -7.1689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316599839.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:43 Heat of formation + Delta-G solvation = -146.301965 kcal Electronic energy + Delta-G solvation = -25214.013146 eV Core-core repulsion = 21064.085832 eV Total energy + Delta-G solvation = -4149.927314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.09480 -48.59792 -48.54836 -41.32850 -39.47341 -36.64245 -35.05198 -34.16119 -29.93721 -29.81833 -27.83761 -27.15728 -25.35559 -24.88464 -23.32285 -20.95274 -20.55655 -19.66800 -19.36686 -18.69267 -18.38889 -17.72923 -17.09555 -16.87908 -16.44281 -15.84230 -15.66248 -15.50335 -15.25874 -14.98795 -14.88806 -14.78129 -14.66971 -14.62512 -14.15721 -13.88551 -13.66460 -13.48810 -13.32105 -12.99118 -12.92167 -12.77668 -12.58402 -12.49908 -12.29985 -12.13540 -11.82809 -11.59790 -11.25338 -10.88967 -10.83700 -9.66668 -8.87639 -7.89266 -5.21792 1.43124 1.45528 1.48465 1.50742 1.54233 1.97298 2.49136 2.67704 2.97779 3.03600 3.32456 3.43299 3.60802 3.84498 3.90522 3.98869 4.20581 4.26230 4.31764 4.48048 4.63029 4.69375 4.71963 4.82858 4.85377 4.96133 5.01073 5.10565 5.22734 5.26940 5.47325 5.53575 5.73815 5.94681 6.32369 6.92052 7.04362 7.63148 8.59725 9.29054 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.004030 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.276915 B = 6946.415894 C = 7029.238607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.149 4.149 3 H 0.176 0.824 4 C 0.511 3.489 5 O -0.568 6.568 6 N -0.596 5.596 7 C 0.051 3.949 8 C 0.128 3.872 9 C 0.137 3.863 10 H 0.067 0.933 11 C -0.133 4.133 12 C 0.159 3.841 13 N -0.630 5.630 14 C -0.228 4.228 15 H 0.087 0.913 16 C -0.071 4.071 17 N -0.958 5.958 18 Si 0.976 3.024 19 H -0.280 1.280 20 H -0.297 1.297 21 H -0.272 1.272 22 C 0.465 3.535 23 F -0.191 7.191 24 F -0.173 7.173 25 F -0.187 7.187 26 H 0.060 0.940 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 18.726 15.340 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.171 4.171 3 H 0.193 0.807 4 C 0.299 3.701 5 O -0.446 6.446 6 N -0.328 5.328 7 C -0.089 4.089 8 C 0.004 3.996 9 C 0.031 3.969 10 H 0.084 0.916 11 C -0.171 4.171 12 C 0.033 3.967 13 N -0.357 5.357 14 C -0.357 4.357 15 H 0.105 0.895 16 C -0.263 4.263 17 N -0.607 5.607 18 Si 0.805 3.195 19 H -0.206 1.206 20 H -0.223 1.223 21 H -0.197 1.197 22 C 0.410 3.590 23 F -0.173 7.173 24 F -0.155 7.155 25 F -0.169 7.169 26 H 0.079 0.921 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.525 18.026 15.143 23.805 hybrid contribution 0.798 -1.056 -0.877 1.588 sum -2.727 16.970 14.266 22.337 Atomic orbital electron populations 1.22136 0.87082 1.04896 1.07210 1.22698 1.02935 1.03564 0.87868 0.80689 1.20391 0.79357 0.85074 0.85322 1.90826 1.42114 1.25087 1.86592 1.47646 1.61577 1.19445 1.04149 1.22546 0.99716 0.80905 1.05761 1.21427 0.96995 0.95284 0.85936 1.22672 0.94951 0.90824 0.88467 0.91566 1.23502 1.00402 0.97301 0.95932 1.22059 0.90645 0.94758 0.89197 1.46331 1.39287 1.11749 1.38321 1.19368 1.07714 1.02626 1.05968 0.89517 1.25655 1.01210 0.97260 1.02206 1.70029 1.38856 1.08933 1.42852 0.85184 0.78446 0.76732 0.79187 1.20598 1.22315 1.19734 1.20204 0.75240 0.77692 0.85821 1.93180 1.30855 1.96413 1.96816 1.93187 1.88330 1.80448 1.53495 1.93191 1.88317 1.38611 1.96771 0.92091 0.87122 0.86956 0.90189 0.89536 0.87307 0.89624 0.92814 0.91966 0.90222 0.95708 0.95852 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.54 71.98 0.61 -1.14 16 2 C -0.15 -2.51 1.89 -11.54 -0.02 -2.53 16 3 H 0.18 1.47 7.77 -2.38 -0.02 1.45 16 4 C 0.51 13.79 6.22 87.65 0.54 14.33 16 5 O -0.57 -21.98 13.13 -3.03 -0.04 -22.02 16 6 N -0.60 -14.16 2.79 -846.78 -2.36 -16.52 16 7 C 0.05 0.59 9.83 127.77 1.26 1.84 16 8 C 0.13 4.28 5.43 86.38 0.47 4.75 16 9 C 0.14 5.29 4.58 45.09 0.21 5.50 16 10 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 11 C -0.13 -5.31 7.26 31.25 0.23 -5.08 16 12 C 0.16 8.01 7.38 86.44 0.64 8.65 16 13 N -0.63 -32.76 3.58 -690.93 -2.47 -35.23 16 14 C -0.23 -12.93 10.51 84.03 0.88 -12.04 16 15 H 0.09 4.60 7.83 -2.91 -0.02 4.57 16 16 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 17 N -0.96 -60.04 11.58 21.65 0.25 -59.79 16 18 Si 0.98 46.79 29.55 68.60 2.03 48.82 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 C 0.46 10.74 2.43 71.98 0.17 10.91 16 23 F -0.19 -5.32 16.55 44.97 0.74 -4.58 16 24 F -0.17 -3.28 16.92 44.97 0.76 -2.52 16 25 F -0.19 -5.52 15.63 44.97 0.70 -4.82 16 26 H 0.06 0.97 7.62 -2.39 -0.02 0.95 16 27 H 0.11 0.65 7.99 -2.39 -0.02 0.63 16 28 H 0.11 0.84 5.33 -2.39 -0.01 0.82 16 29 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.09 0.96 8.05 -2.38 -0.02 0.94 16 31 H 0.11 0.58 4.21 -2.39 -0.01 0.57 16 32 H 0.09 2.59 8.11 -2.39 -0.02 2.57 16 33 H 0.05 2.28 7.21 -2.38 -0.02 2.27 16 34 H 0.06 2.79 6.84 -2.39 -0.02 2.77 16 35 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.02 1.42 7.48 -2.38 -0.02 1.40 16 37 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -78.99 319.92 6.15 -72.84 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: 1.08 Total: 2.29 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 5.46 Total: 21.52 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -4.58 Total: -111.54 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.04 Total: -22.02 kcal Atomic # 9 Polarization: -14.12 SS G_CDS: 2.21 Total: -11.91 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -78.99 6.15 -72.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316599839.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.459 kcal (2) G-P(sol) polarization free energy of solvation -78.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds