Wall clock time and date at job start Tue Mar 31 2020 07:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47046 * 2 1 4 4 C 1.50698 * 109.47532 * 120.00332 * 2 1 3 5 5 O 1.21281 * 120.00343 * 106.96765 * 4 2 1 6 6 N 1.34782 * 119.99724 * 286.97502 * 4 2 1 7 7 C 1.46501 * 120.00049 * 5.63586 * 6 4 2 8 8 C 1.46503 * 119.99882 * 185.63992 * 6 4 2 9 9 C 1.52995 * 109.46847 * 264.58575 * 8 6 4 10 10 H 1.08997 * 112.74150 * 314.92858 * 9 8 6 11 11 C 1.53611 * 113.55978 * 85.68216 * 9 8 6 12 12 C 1.53495 * 83.30748 * 140.82268 * 11 9 8 13 13 N 1.47066 * 113.46392 * 184.18327 * 9 8 6 14 14 C 1.36939 * 136.05945 * 38.01031 * 13 9 8 15 15 H 1.08000 * 119.99868 * 354.21136 * 14 13 9 16 16 C 1.38806 * 120.00209 * 174.21550 * 14 13 9 17 17 N 1.31619 * 120.00075 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00059 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47207 * 90.00088 * 18 16 14 20 20 H 1.48505 * 109.46949 * 209.99902 * 18 16 14 21 21 H 1.48499 * 109.46983 * 329.99660 * 18 16 14 22 22 C 1.53005 * 109.46945 * 240.00323 * 2 1 3 23 23 F 1.39902 * 109.47064 * 299.99662 * 22 2 1 24 24 F 1.39896 * 109.46998 * 60.00144 * 22 2 1 25 25 F 1.39903 * 109.46717 * 179.97438 * 22 2 1 26 26 H 1.09002 * 109.47515 * 58.41810 * 1 2 3 27 27 H 1.09003 * 109.46833 * 178.41383 * 1 2 3 28 28 H 1.09000 * 109.46896 * 298.41378 * 1 2 3 29 29 H 1.08992 * 109.47151 * 206.75414 * 7 6 4 30 30 H 1.09002 * 109.46921 * 326.75632 * 7 6 4 31 31 H 1.09001 * 109.47244 * 86.75298 * 7 6 4 32 32 H 1.09000 * 109.46588 * 144.58299 * 8 6 4 33 33 H 1.09003 * 109.46916 * 24.58727 * 8 6 4 34 34 H 1.08997 * 114.20721 * 27.25174 * 11 9 8 35 35 H 1.09002 * 114.23876 * 254.39237 * 11 9 8 36 36 H 1.09002 * 113.46573 * 219.17024 * 12 11 9 37 37 H 1.08992 * 113.46901 * 88.78744 * 12 11 9 38 38 H 0.97001 * 120.00571 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5236 -1.8152 1.1347 6 7 1.9358 -0.1181 2.4372 7 6 1.2326 1.1600 2.5717 8 6 2.5340 -0.7525 3.6145 9 6 1.4704 -1.5720 4.3479 10 1 0.5273 -1.0366 4.4575 11 6 1.3036 -2.9957 3.7959 12 6 1.1518 -3.3601 5.2792 13 7 1.9535 -2.1700 5.6017 14 6 2.7845 -1.7875 6.6206 15 1 3.3313 -0.8587 6.5517 16 6 2.9243 -2.5935 7.7420 17 7 2.2576 -3.7252 7.8263 18 14 4.0585 -2.0719 9.1317 19 1 3.2961 -1.2618 10.1153 20 1 4.6064 -3.2782 9.8026 21 1 5.1747 -1.2614 8.5818 22 6 2.0400 -0.7212 -1.2493 23 9 1.5737 -2.0402 -1.2493 24 9 1.5736 -0.0616 -2.3915 25 9 3.4390 -0.7207 -1.2496 26 1 -0.3634 0.5382 -0.8755 27 1 -0.3633 -1.0273 -0.0284 28 1 -0.3633 0.4890 0.9039 29 1 1.6323 1.7065 3.4258 30 1 1.3731 1.7491 1.6654 31 1 0.1691 0.9755 2.7237 32 1 2.9251 0.0157 4.2817 33 1 3.3458 -1.4086 3.3005 34 1 2.1996 -3.4006 3.3257 35 1 0.3998 -3.1434 3.2047 36 1 1.6389 -4.2974 5.5480 37 1 0.1242 -3.3014 5.6377 38 1 2.3555 -4.2887 8.6098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316599850.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:47 Heat of formation + Delta-G solvation = -125.611612 kcal Electronic energy + Delta-G solvation = -25008.178332 eV Core-core repulsion = 20859.148219 eV Total energy + Delta-G solvation = -4149.030113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.15972 -47.69633 -47.53940 -40.15262 -37.98247 -35.48303 -34.13426 -32.16711 -28.58667 -27.87086 -26.94108 -26.35915 -23.70023 -23.32345 -21.92363 -19.60874 -19.14554 -18.72612 -18.42170 -17.50249 -17.00986 -16.49641 -15.73294 -15.62644 -14.75185 -14.58659 -14.49645 -14.05662 -14.03601 -13.89951 -13.77028 -13.71940 -13.66465 -13.51089 -13.01623 -12.70956 -12.59074 -12.29197 -12.11205 -11.97556 -11.59171 -11.46117 -11.07622 -10.88180 -10.73669 -10.41114 -9.91214 -9.81569 -9.77341 -9.44484 -8.78572 -8.39982 -6.86114 -5.76333 -3.08763 2.39704 2.50755 2.96152 3.38595 3.43021 3.45783 3.55088 3.88148 3.88324 4.39121 4.47025 4.58776 4.66733 4.95737 5.13677 5.21786 5.24165 5.30829 5.46050 5.52423 5.57618 5.72442 5.85906 5.96446 6.04244 6.38943 6.45703 6.62142 6.77378 6.80810 7.26749 7.32965 7.50313 7.60209 7.98575 8.07540 9.03572 9.70975 10.66676 11.41708 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030871 B = 0.003758 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.773529 B = 7449.470730 C = 7569.669140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.163 4.163 3 H 0.133 0.867 4 C 0.518 3.482 5 O -0.510 6.510 6 N -0.602 5.602 7 C 0.073 3.927 8 C 0.116 3.884 9 C 0.130 3.870 10 H 0.040 0.960 11 C -0.157 4.157 12 C 0.156 3.844 13 N -0.600 5.600 14 C -0.220 4.220 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.472 3.528 23 F -0.167 7.167 24 F -0.184 7.184 25 F -0.177 7.177 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.024 0.976 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.705 11.412 -17.414 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.185 4.185 3 H 0.151 0.849 4 C 0.302 3.698 5 O -0.384 6.384 6 N -0.335 5.335 7 C -0.071 4.071 8 C -0.007 4.007 9 C 0.022 3.978 10 H 0.057 0.943 11 C -0.195 4.195 12 C 0.030 3.970 13 N -0.327 5.327 14 C -0.348 4.348 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.564 5.564 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.417 3.583 23 F -0.148 7.148 24 F -0.166 7.166 25 F -0.158 7.158 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.233 10.749 -17.122 20.655 hybrid contribution 0.481 0.414 0.773 1.000 sum -3.752 11.163 -16.350 20.149 Atomic orbital electron populations 1.21901 0.89233 1.05070 1.04827 1.22651 1.01530 1.02661 0.91704 0.84887 1.19646 0.79945 0.86233 0.83944 1.90831 1.43751 1.18331 1.85515 1.47743 1.55536 1.22493 1.07767 1.21957 0.97367 0.84912 1.02835 1.22014 0.97159 0.97323 0.84203 1.22436 0.94185 0.93564 0.87594 0.94290 1.23666 1.00609 0.97355 0.97885 1.21968 0.93807 0.93025 0.88185 1.45630 1.50890 1.15337 1.20797 1.18866 1.16626 1.04817 0.94460 0.90274 1.24812 1.00186 0.97360 0.97904 1.69850 1.44455 1.12635 1.29424 0.86152 0.80076 0.77411 0.82300 1.21631 1.21612 1.20593 1.19811 0.75813 0.78170 0.84473 1.93230 1.88166 1.36797 1.96600 1.93169 1.88592 1.80932 1.53906 1.93211 1.29524 1.96405 1.96683 0.90125 0.90335 0.89383 0.90293 0.91460 0.92006 0.90675 0.89217 0.89937 0.93261 0.91754 0.95810 0.93629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.75 37.16 0.33 -0.83 16 2 C -0.16 -1.60 1.89 -91.77 -0.17 -1.77 16 3 H 0.13 0.90 6.89 -51.93 -0.36 0.54 16 4 C 0.52 7.26 6.68 -10.98 -0.07 7.18 16 5 O -0.51 -9.32 14.17 5.56 0.08 -9.24 16 6 N -0.60 -8.02 2.87 -181.57 -0.52 -8.54 16 7 C 0.07 0.63 9.13 59.85 0.55 1.18 16 8 C 0.12 2.01 5.40 -4.04 -0.02 1.99 16 9 C 0.13 2.64 4.31 -72.34 -0.31 2.33 16 10 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 11 C -0.16 -3.23 7.71 -26.16 -0.20 -3.43 16 12 C 0.16 3.82 7.26 -8.51 -0.06 3.75 16 13 N -0.60 -15.35 3.65 -176.81 -0.64 -16.00 16 14 C -0.22 -6.08 10.55 -15.06 -0.16 -6.24 16 15 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 16 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -27.53 11.66 55.49 0.65 -26.89 16 18 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.47 5.63 2.44 37.16 0.09 5.72 16 23 F -0.17 -2.36 15.57 2.25 0.04 -2.33 16 24 F -0.18 -1.92 16.83 2.25 0.04 -1.89 16 25 F -0.18 -2.43 16.72 2.25 0.04 -2.39 16 26 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 27 H 0.08 0.71 7.76 -51.93 -0.40 0.30 16 28 H 0.09 0.55 5.73 -51.93 -0.30 0.25 16 29 H 0.08 0.67 7.91 -51.93 -0.41 0.26 16 30 H 0.07 0.38 6.12 -51.93 -0.32 0.06 16 31 H 0.06 0.48 7.19 -51.93 -0.37 0.11 16 32 H 0.07 1.28 7.95 -51.93 -0.41 0.87 16 33 H 0.09 1.78 7.11 -51.93 -0.37 1.41 16 34 H 0.08 1.80 7.96 -51.93 -0.41 1.39 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.74 7.39 -51.93 -0.38 1.35 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -33.31 322.39 -5.59 -38.90 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.96 Total: -3.10 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -0.14 Total: 9.62 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.52 Total: -51.42 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.11 Total: -6.60 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.31 -5.59 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316599850.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.708 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds