Wall clock time and date at job start Tue Mar 31 2020 07:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47046 * 2 1 4 4 C 1.50698 * 109.47532 * 120.00332 * 2 1 3 5 5 O 1.21281 * 120.00343 * 106.96765 * 4 2 1 6 6 N 1.34782 * 119.99724 * 286.97502 * 4 2 1 7 7 C 1.46501 * 120.00049 * 5.63586 * 6 4 2 8 8 C 1.46503 * 119.99882 * 185.63992 * 6 4 2 9 9 C 1.52995 * 109.46847 * 264.58575 * 8 6 4 10 10 H 1.08997 * 112.74150 * 314.92858 * 9 8 6 11 11 C 1.53611 * 113.55978 * 85.68216 * 9 8 6 12 12 C 1.53495 * 83.30748 * 140.82268 * 11 9 8 13 13 N 1.47066 * 113.46392 * 184.18327 * 9 8 6 14 14 C 1.36939 * 136.05945 * 38.01031 * 13 9 8 15 15 H 1.08000 * 119.99868 * 354.21136 * 14 13 9 16 16 C 1.38806 * 120.00209 * 174.21550 * 14 13 9 17 17 N 1.31619 * 120.00075 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00059 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47207 * 90.00088 * 18 16 14 20 20 H 1.48505 * 109.46949 * 209.99902 * 18 16 14 21 21 H 1.48499 * 109.46983 * 329.99660 * 18 16 14 22 22 C 1.53005 * 109.46945 * 240.00323 * 2 1 3 23 23 F 1.39902 * 109.47064 * 299.99662 * 22 2 1 24 24 F 1.39896 * 109.46998 * 60.00144 * 22 2 1 25 25 F 1.39903 * 109.46717 * 179.97438 * 22 2 1 26 26 H 1.09002 * 109.47515 * 58.41810 * 1 2 3 27 27 H 1.09003 * 109.46833 * 178.41383 * 1 2 3 28 28 H 1.09000 * 109.46896 * 298.41378 * 1 2 3 29 29 H 1.08992 * 109.47151 * 206.75414 * 7 6 4 30 30 H 1.09002 * 109.46921 * 326.75632 * 7 6 4 31 31 H 1.09001 * 109.47244 * 86.75298 * 7 6 4 32 32 H 1.09000 * 109.46588 * 144.58299 * 8 6 4 33 33 H 1.09003 * 109.46916 * 24.58727 * 8 6 4 34 34 H 1.08997 * 114.20721 * 27.25174 * 11 9 8 35 35 H 1.09002 * 114.23876 * 254.39237 * 11 9 8 36 36 H 1.09002 * 113.46573 * 219.17024 * 12 11 9 37 37 H 1.08992 * 113.46901 * 88.78744 * 12 11 9 38 38 H 0.97001 * 120.00571 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.5236 -1.8152 1.1347 6 7 1.9358 -0.1181 2.4372 7 6 1.2326 1.1600 2.5717 8 6 2.5340 -0.7525 3.6145 9 6 1.4704 -1.5720 4.3479 10 1 0.5273 -1.0366 4.4575 11 6 1.3036 -2.9957 3.7959 12 6 1.1518 -3.3601 5.2792 13 7 1.9535 -2.1700 5.6017 14 6 2.7845 -1.7875 6.6206 15 1 3.3313 -0.8587 6.5517 16 6 2.9243 -2.5935 7.7420 17 7 2.2576 -3.7252 7.8263 18 14 4.0585 -2.0719 9.1317 19 1 3.2961 -1.2618 10.1153 20 1 4.6064 -3.2782 9.8026 21 1 5.1747 -1.2614 8.5818 22 6 2.0400 -0.7212 -1.2493 23 9 1.5737 -2.0402 -1.2493 24 9 1.5736 -0.0616 -2.3915 25 9 3.4390 -0.7207 -1.2496 26 1 -0.3634 0.5382 -0.8755 27 1 -0.3633 -1.0273 -0.0284 28 1 -0.3633 0.4890 0.9039 29 1 1.6323 1.7065 3.4258 30 1 1.3731 1.7491 1.6654 31 1 0.1691 0.9755 2.7237 32 1 2.9251 0.0157 4.2817 33 1 3.3458 -1.4086 3.3005 34 1 2.1996 -3.4006 3.3257 35 1 0.3998 -3.1434 3.2047 36 1 1.6389 -4.2974 5.5480 37 1 0.1242 -3.3014 5.6377 38 1 2.3555 -4.2887 8.6098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316599850.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:46 Heat of formation + Delta-G solvation = -147.282798 kcal Electronic energy + Delta-G solvation = -25009.118065 eV Core-core repulsion = 20859.148219 eV Total energy + Delta-G solvation = -4149.969846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.09363 -48.60579 -48.53661 -41.30154 -39.70370 -36.62397 -35.03207 -34.20905 -29.98081 -29.82667 -27.76848 -27.18524 -25.43412 -24.82863 -23.24707 -21.06788 -20.58447 -19.67223 -19.36722 -18.71212 -18.43522 -17.74328 -17.13976 -16.88771 -16.32041 -15.80304 -15.63679 -15.51020 -15.22606 -14.98594 -14.89834 -14.76265 -14.66494 -14.44998 -14.14351 -13.90546 -13.71042 -13.45474 -13.31764 -13.02996 -13.00098 -12.85001 -12.62070 -12.52846 -12.30804 -12.24030 -11.82310 -11.66260 -11.19141 -10.89772 -10.83842 -9.66321 -8.90543 -7.89809 -5.23322 1.42394 1.45707 1.48682 1.53003 1.57065 1.97023 2.48516 2.68234 2.98446 3.03401 3.32044 3.44437 3.60537 3.85941 3.87566 3.93505 4.21360 4.33360 4.35004 4.43901 4.60903 4.69081 4.71713 4.79082 4.85425 4.95043 5.02242 5.07992 5.18161 5.21643 5.42770 5.51362 5.71575 5.92397 6.31009 6.90004 7.02285 7.61291 8.62622 9.29253 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030871 B = 0.003758 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.773529 B = 7449.470730 C = 7569.669140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 H 0.174 0.826 4 C 0.511 3.489 5 O -0.562 6.562 6 N -0.599 5.599 7 C 0.061 3.939 8 C 0.130 3.870 9 C 0.139 3.861 10 H 0.058 0.942 11 C -0.133 4.133 12 C 0.151 3.849 13 N -0.629 5.629 14 C -0.223 4.223 15 H 0.093 0.907 16 C -0.071 4.071 17 N -0.958 5.958 18 Si 0.979 3.021 19 H -0.284 1.284 20 H -0.299 1.299 21 H -0.265 1.265 22 C 0.465 3.535 23 F -0.185 7.185 24 F -0.174 7.174 25 F -0.192 7.192 26 H 0.106 0.894 27 H 0.059 0.941 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.020 0.980 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 14.640 -18.507 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.171 4.171 3 H 0.191 0.809 4 C 0.298 3.702 5 O -0.440 6.440 6 N -0.331 5.331 7 C -0.080 4.080 8 C 0.006 3.994 9 C 0.033 3.967 10 H 0.076 0.924 11 C -0.171 4.171 12 C 0.025 3.975 13 N -0.355 5.355 14 C -0.351 4.351 15 H 0.110 0.890 16 C -0.264 4.264 17 N -0.607 5.607 18 Si 0.807 3.193 19 H -0.211 1.211 20 H -0.226 1.226 21 H -0.189 1.189 22 C 0.411 3.589 23 F -0.167 7.167 24 F -0.155 7.155 25 F -0.173 7.173 26 H 0.124 0.876 27 H 0.078 0.922 28 H 0.126 0.874 29 H 0.101 0.899 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.969 14.050 -18.257 23.567 hybrid contribution 0.663 -0.575 1.012 1.340 sum -4.305 13.475 -17.245 22.305 Atomic orbital electron populations 1.21994 0.87082 1.04656 1.07085 1.22707 1.02991 1.03418 0.87980 0.80874 1.20379 0.78943 0.85793 0.85109 1.90817 1.45993 1.20846 1.86363 1.47742 1.55375 1.23730 1.06238 1.22355 0.97619 0.82892 1.05162 1.21506 0.95463 0.96873 0.85574 1.22512 0.95394 0.93739 0.85098 0.92422 1.23394 1.00876 0.97461 0.95397 1.21931 0.93066 0.91598 0.90873 1.45938 1.50984 1.16616 1.21977 1.19339 1.16385 1.04744 0.94595 0.88976 1.25697 1.02361 0.97610 1.00699 1.70053 1.46700 1.14044 1.29862 0.85064 0.78466 0.76676 0.79058 1.21059 1.22603 1.18923 1.20202 0.75198 0.77762 0.85779 1.93194 1.88289 1.38420 1.96756 1.93187 1.88333 1.80487 1.53504 1.93182 1.30885 1.96430 1.96823 0.87552 0.92182 0.87390 0.89868 0.87608 0.90475 0.90021 0.92264 0.91640 0.90736 0.95463 0.96189 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.75 71.98 0.63 -1.03 16 2 C -0.15 -2.42 1.89 -11.54 -0.02 -2.44 16 3 H 0.17 1.39 6.89 -2.38 -0.02 1.38 16 4 C 0.51 13.29 6.68 87.66 0.59 13.87 16 5 O -0.56 -20.51 14.17 -3.03 -0.04 -20.56 16 6 N -0.60 -14.30 2.87 -846.75 -2.43 -16.73 16 7 C 0.06 0.77 9.13 127.77 1.17 1.93 16 8 C 0.13 4.37 5.40 86.38 0.47 4.83 16 9 C 0.14 5.50 4.31 41.83 0.18 5.68 16 10 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 11 C -0.13 -5.50 7.71 30.97 0.24 -5.26 16 12 C 0.15 7.63 7.26 83.18 0.60 8.23 16 13 N -0.63 -32.40 3.65 -713.30 -2.60 -35.00 16 14 C -0.22 -12.31 10.55 84.03 0.89 -11.43 16 15 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 16 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 17 N -0.96 -59.36 11.66 21.65 0.25 -59.10 16 18 Si 0.98 45.72 29.55 68.60 2.03 47.75 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 20 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 21 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 22 C 0.47 10.23 2.44 71.98 0.18 10.41 16 23 F -0.19 -5.16 15.57 44.97 0.70 -4.46 16 24 F -0.17 -3.16 16.83 44.97 0.76 -2.41 16 25 F -0.19 -5.08 16.72 44.97 0.75 -4.33 16 26 H 0.11 0.68 7.85 -2.39 -0.02 0.66 16 27 H 0.06 0.92 7.76 -2.39 -0.02 0.90 16 28 H 0.11 0.78 5.73 -2.39 -0.01 0.76 16 29 H 0.08 1.04 7.91 -2.39 -0.02 1.02 16 30 H 0.11 0.55 6.12 -2.39 -0.01 0.53 16 31 H 0.08 0.80 7.19 -2.39 -0.02 0.78 16 32 H 0.08 2.64 7.95 -2.39 -0.02 2.62 16 33 H 0.06 2.37 7.11 -2.39 -0.02 2.35 16 34 H 0.06 2.95 7.96 -2.39 -0.02 2.93 16 35 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.03 1.55 7.39 -2.39 -0.02 1.53 16 37 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -76.03 322.39 5.87 -70.17 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: 1.08 Total: 3.49 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: 5.38 Total: 21.20 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -4.78 Total: -110.84 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.04 Total: -20.56 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 2.21 Total: -11.20 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -76.03 5.87 -70.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316599850.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.118 kcal (2) G-P(sol) polarization free energy of solvation -76.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds