Wall clock time and date at job start Tue Mar 31 2020 07:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47253 * 2 1 4 4 C 1.50697 * 109.46765 * 119.99651 * 2 1 3 5 5 O 1.21285 * 120.00360 * 120.27898 * 4 2 1 6 6 N 1.34778 * 120.00454 * 300.00017 * 4 2 1 7 7 C 1.46504 * 119.99453 * 0.02562 * 6 4 2 8 8 C 1.46497 * 120.00637 * 179.97438 * 6 4 2 9 9 C 1.53008 * 109.46800 * 95.44639 * 8 6 4 10 10 H 1.08997 * 112.96264 * 66.59014 * 9 8 6 11 11 C 1.53945 * 113.76726 * 294.90804 * 9 8 6 12 12 C 1.53948 * 86.28925 * 222.09272 * 11 9 8 13 13 N 1.47582 * 113.76506 * 198.26618 * 9 8 6 14 14 C 1.36937 * 134.49716 * 318.93295 * 13 9 8 15 15 H 1.07998 * 119.99688 * 355.65817 * 14 13 9 16 16 C 1.38814 * 119.99969 * 175.65649 * 14 13 9 17 17 N 1.31615 * 120.00119 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99713 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47372 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47120 * 120.00078 * 18 16 14 21 21 H 1.48495 * 109.47137 * 240.00036 * 18 16 14 22 22 C 1.52992 * 109.47645 * 239.99622 * 2 1 3 23 23 F 1.39902 * 109.47358 * 300.00179 * 22 2 1 24 24 F 1.39903 * 109.47060 * 60.00301 * 22 2 1 25 25 F 1.39905 * 109.47491 * 180.02562 * 22 2 1 26 26 H 1.08993 * 109.47238 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47643 * 300.00561 * 1 2 3 28 28 H 1.09003 * 109.46366 * 60.00111 * 1 2 3 29 29 H 1.09002 * 109.47098 * 91.84657 * 7 6 4 30 30 H 1.09003 * 109.47182 * 211.84421 * 7 6 4 31 31 H 1.09000 * 109.47430 * 331.84697 * 7 6 4 32 32 H 1.09003 * 109.47533 * 215.44543 * 8 6 4 33 33 H 1.09004 * 109.47057 * 335.45070 * 8 6 4 34 34 H 1.09002 * 113.74695 * 336.44172 * 11 9 8 35 35 H 1.09006 * 113.73644 * 107.64150 * 11 9 8 36 36 H 1.08997 * 113.76324 * 137.91169 * 12 11 9 37 37 H 1.09003 * 113.76761 * 269.19651 * 12 11 9 38 38 H 0.96995 * 120.00553 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 2.7337 -1.6935 1.1194 6 7 1.7066 -0.2499 2.4546 7 6 0.8639 0.9410 2.5889 8 6 2.1944 -0.9407 3.6509 9 6 3.4726 -0.2612 4.1466 10 1 3.3013 0.7506 4.5139 11 6 4.6551 -0.3741 3.1674 12 6 5.5246 -0.6548 4.4064 13 7 4.2750 -1.0979 5.0600 14 6 3.9795 -1.9441 6.0952 15 1 2.9589 -2.0488 6.4325 16 6 4.9918 -2.6673 6.7111 17 7 6.2354 -2.5401 6.2996 18 14 4.5887 -3.8210 8.1237 19 1 3.1286 -3.7843 8.3918 20 1 4.9905 -5.2044 7.7631 21 1 5.3265 -3.3922 9.3390 22 6 2.0401 -0.7213 -1.2491 23 9 1.5738 -2.0403 -1.2491 24 9 1.5739 -0.0618 -2.3915 25 9 3.4391 -0.7218 -1.2488 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.1818 0.6405 2.6554 30 1 1.1439 1.4843 3.4914 31 1 1.0026 1.5842 1.7199 32 1 1.4341 -0.8976 4.4308 33 1 2.4071 -1.9818 3.4078 34 1 4.5795 -1.2196 2.4835 35 1 4.8970 0.5609 2.6620 36 1 6.2524 -1.4530 4.2605 37 1 5.9589 0.2410 4.8503 38 1 6.9429 -3.0451 6.7301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316599851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:50 Heat of formation + Delta-G solvation = -124.187212 kcal Electronic energy + Delta-G solvation = -25172.499533 eV Core-core repulsion = 21023.531186 eV Total energy + Delta-G solvation = -4148.968347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.11200 -47.64519 -47.49164 -40.17919 -37.74164 -35.53805 -34.09666 -32.08682 -28.59172 -27.79637 -27.04439 -26.26366 -23.74519 -23.21925 -21.97158 -19.67388 -18.94838 -18.69381 -18.35696 -17.48173 -16.86494 -16.55944 -15.96575 -15.33641 -14.81327 -14.56312 -14.49595 -14.10280 -13.97770 -13.91881 -13.75953 -13.66742 -13.63381 -13.50806 -13.07701 -12.64272 -12.47085 -12.30704 -12.17637 -11.89763 -11.49894 -11.38034 -11.01050 -10.85829 -10.63948 -10.41979 -9.87364 -9.75448 -9.65939 -9.52541 -8.73901 -8.45101 -6.81985 -5.70718 -3.04481 2.45460 2.52677 2.97910 3.41535 3.45867 3.49155 3.58505 3.89833 3.91959 4.41997 4.49797 4.61393 4.71360 4.92397 5.10836 5.16976 5.25072 5.27813 5.46371 5.47946 5.58873 5.68917 5.85831 5.93515 6.10655 6.37814 6.51934 6.64742 6.74776 6.82899 7.31476 7.34925 7.56412 7.68265 8.04544 8.12247 9.08490 9.76044 10.66148 11.45537 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026336 B = 0.004079 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.924128 B = 6863.493076 C = 7086.823229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.162 4.162 3 H 0.137 0.863 4 C 0.518 3.482 5 O -0.508 6.508 6 N -0.601 5.601 7 C 0.071 3.929 8 C 0.116 3.884 9 C 0.128 3.872 10 H 0.041 0.959 11 C -0.158 4.158 12 C 0.155 3.845 13 N -0.600 5.600 14 C -0.223 4.223 15 H 0.078 0.922 16 C -0.006 4.006 17 N -0.918 5.918 18 Si 0.910 3.090 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.473 3.527 23 F -0.172 7.172 24 F -0.185 7.185 25 F -0.171 7.171 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.022 0.978 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.375 10.020 -14.052 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.185 4.185 3 H 0.154 0.846 4 C 0.303 3.697 5 O -0.382 6.382 6 N -0.334 5.334 7 C -0.072 4.072 8 C -0.007 4.007 9 C 0.020 3.980 10 H 0.058 0.942 11 C -0.196 4.196 12 C 0.030 3.970 13 N -0.326 5.326 14 C -0.351 4.351 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.740 3.260 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.218 1.218 22 C 0.418 3.582 23 F -0.153 7.153 24 F -0.167 7.167 25 F -0.152 7.152 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.899 9.215 -13.852 21.052 hybrid contribution -0.091 -0.412 0.766 0.874 sum -12.989 8.804 -13.086 20.432 Atomic orbital electron populations 1.22101 0.89624 1.04960 1.05215 1.22622 1.01205 1.02929 0.91761 0.84575 1.19648 0.81142 0.84983 0.83960 1.90848 1.36100 1.25550 1.85699 1.47656 1.50765 1.29120 1.05856 1.22022 0.94459 0.87388 1.03321 1.21926 0.96436 0.98258 0.84077 1.22515 0.91393 0.93673 0.90409 0.94159 1.23813 0.97981 1.00185 0.97646 1.22298 0.90957 0.96871 0.86825 1.45953 1.01722 1.48202 1.36729 1.19008 0.93560 1.15228 1.07301 0.90423 1.24774 0.95371 1.00116 1.00031 1.69835 0.99025 1.44400 1.43224 0.86085 0.77369 0.80704 0.81807 1.20515 1.21685 1.21830 1.19769 0.76136 0.77900 0.84372 1.93207 1.88297 1.37169 1.96642 1.93167 1.88639 1.80921 1.53931 1.93240 1.29012 1.96326 1.96618 0.90617 0.88815 0.90203 0.92102 0.90403 0.91102 0.91168 0.88575 0.89501 0.94046 0.90516 0.96041 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 8.57 37.16 0.32 -0.83 16 2 C -0.16 -1.64 1.90 -91.78 -0.17 -1.82 16 3 H 0.14 1.00 7.41 -51.93 -0.38 0.61 16 4 C 0.52 7.46 6.42 -10.99 -0.07 7.39 16 5 O -0.51 -9.75 12.73 5.55 0.07 -9.68 16 6 N -0.60 -7.96 2.79 -181.56 -0.51 -8.47 16 7 C 0.07 0.58 8.82 59.85 0.53 1.11 16 8 C 0.12 2.02 5.41 -4.04 -0.02 1.99 16 9 C 0.13 2.59 4.57 -66.86 -0.31 2.28 16 10 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.16 -3.28 7.25 -25.79 -0.19 -3.47 16 12 C 0.16 3.86 7.63 -2.84 -0.02 3.84 16 13 N -0.60 -15.52 3.58 -169.70 -0.61 -16.13 16 14 C -0.22 -6.26 10.51 -15.06 -0.16 -6.42 16 15 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 17 N -0.92 -27.87 11.32 55.49 0.63 -27.24 16 18 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 22 C 0.47 5.89 2.42 37.15 0.09 5.98 16 23 F -0.17 -2.47 15.89 2.25 0.04 -2.44 16 24 F -0.19 -2.00 16.80 2.25 0.04 -1.97 16 25 F -0.17 -2.55 16.39 2.25 0.04 -2.51 16 26 H 0.07 0.63 7.80 -51.93 -0.41 0.22 16 27 H 0.09 0.50 4.56 -51.93 -0.24 0.26 16 28 H 0.08 0.43 7.80 -51.93 -0.41 0.03 16 29 H 0.06 0.38 7.07 -51.93 -0.37 0.02 16 30 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 31 H 0.07 0.40 5.87 -51.93 -0.30 0.10 16 32 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 33 H 0.10 2.02 7.27 -51.93 -0.38 1.64 16 34 H 0.09 1.97 6.55 -51.93 -0.34 1.63 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 2.13 6.98 -51.93 -0.36 1.76 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -34.09 317.47 -5.48 -39.58 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: -4.84 Total: -3.11 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -0.10 Total: 9.79 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.49 Total: -51.84 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 9 Polarization: -7.02 SS G_CDS: 0.11 Total: -6.91 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.09 -5.48 -39.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316599851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.610 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds