Wall clock time and date at job start Tue Mar 31 2020 07:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47253 * 2 1 4 4 C 1.50697 * 109.46765 * 119.99651 * 2 1 3 5 5 O 1.21285 * 120.00360 * 120.27898 * 4 2 1 6 6 N 1.34778 * 120.00454 * 300.00017 * 4 2 1 7 7 C 1.46504 * 119.99453 * 0.02562 * 6 4 2 8 8 C 1.46497 * 120.00637 * 179.97438 * 6 4 2 9 9 C 1.53008 * 109.46800 * 95.44639 * 8 6 4 10 10 H 1.08997 * 112.96264 * 66.59014 * 9 8 6 11 11 C 1.53945 * 113.76726 * 294.90804 * 9 8 6 12 12 C 1.53948 * 86.28925 * 222.09272 * 11 9 8 13 13 N 1.47582 * 113.76506 * 198.26618 * 9 8 6 14 14 C 1.36937 * 134.49716 * 318.93295 * 13 9 8 15 15 H 1.07998 * 119.99688 * 355.65817 * 14 13 9 16 16 C 1.38814 * 119.99969 * 175.65649 * 14 13 9 17 17 N 1.31615 * 120.00119 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99713 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47372 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47120 * 120.00078 * 18 16 14 21 21 H 1.48495 * 109.47137 * 240.00036 * 18 16 14 22 22 C 1.52992 * 109.47645 * 239.99622 * 2 1 3 23 23 F 1.39902 * 109.47358 * 300.00179 * 22 2 1 24 24 F 1.39903 * 109.47060 * 60.00301 * 22 2 1 25 25 F 1.39905 * 109.47491 * 180.02562 * 22 2 1 26 26 H 1.08993 * 109.47238 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47643 * 300.00561 * 1 2 3 28 28 H 1.09003 * 109.46366 * 60.00111 * 1 2 3 29 29 H 1.09002 * 109.47098 * 91.84657 * 7 6 4 30 30 H 1.09003 * 109.47182 * 211.84421 * 7 6 4 31 31 H 1.09000 * 109.47430 * 331.84697 * 7 6 4 32 32 H 1.09003 * 109.47533 * 215.44543 * 8 6 4 33 33 H 1.09004 * 109.47057 * 335.45070 * 8 6 4 34 34 H 1.09002 * 113.74695 * 336.44172 * 11 9 8 35 35 H 1.09006 * 113.73644 * 107.64150 * 11 9 8 36 36 H 1.08997 * 113.76324 * 137.91169 * 12 11 9 37 37 H 1.09003 * 113.76761 * 269.19651 * 12 11 9 38 38 H 0.96995 * 120.00553 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 2.7337 -1.6935 1.1194 6 7 1.7066 -0.2499 2.4546 7 6 0.8639 0.9410 2.5889 8 6 2.1944 -0.9407 3.6509 9 6 3.4726 -0.2612 4.1466 10 1 3.3013 0.7506 4.5139 11 6 4.6551 -0.3741 3.1674 12 6 5.5246 -0.6548 4.4064 13 7 4.2750 -1.0979 5.0600 14 6 3.9795 -1.9441 6.0952 15 1 2.9589 -2.0488 6.4325 16 6 4.9918 -2.6673 6.7111 17 7 6.2354 -2.5401 6.2996 18 14 4.5887 -3.8210 8.1237 19 1 3.1286 -3.7843 8.3918 20 1 4.9905 -5.2044 7.7631 21 1 5.3265 -3.3922 9.3390 22 6 2.0401 -0.7213 -1.2491 23 9 1.5738 -2.0403 -1.2491 24 9 1.5739 -0.0618 -2.3915 25 9 3.4391 -0.7218 -1.2488 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.1818 0.6405 2.6554 30 1 1.1439 1.4843 3.4914 31 1 1.0026 1.5842 1.7199 32 1 1.4341 -0.8976 4.4308 33 1 2.4071 -1.9818 3.4078 34 1 4.5795 -1.2196 2.4835 35 1 4.8970 0.5609 2.6620 36 1 6.2524 -1.4530 4.2605 37 1 5.9589 0.2410 4.8503 38 1 6.9429 -3.0451 6.7301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316599851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:49 Heat of formation + Delta-G solvation = -146.927536 kcal Electronic energy + Delta-G solvation = -25173.485627 eV Core-core repulsion = 21023.531186 eV Total energy + Delta-G solvation = -4149.954441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.09351 -48.59279 -48.55183 -41.32882 -39.46797 -36.67680 -35.03866 -34.13904 -29.92100 -29.82235 -27.89561 -27.06775 -25.34349 -24.92120 -23.28177 -20.96337 -20.56732 -19.66818 -19.34943 -18.72124 -18.39826 -17.71170 -17.28119 -16.65721 -16.49187 -15.84088 -15.62097 -15.50439 -15.19055 -14.97309 -14.84993 -14.78405 -14.67284 -14.56532 -14.15047 -13.98663 -13.68788 -13.49271 -13.28116 -12.98593 -12.94159 -12.75683 -12.54783 -12.46375 -12.26430 -12.18283 -11.79529 -11.57685 -11.29004 -10.89708 -10.83040 -9.66587 -8.87599 -7.87150 -5.21601 1.43808 1.46487 1.48219 1.50726 1.56153 1.96879 2.48766 2.68096 2.98540 3.03467 3.33363 3.43201 3.59901 3.85708 3.91831 3.98555 4.20923 4.31497 4.35328 4.49681 4.62887 4.70251 4.71611 4.82399 4.84700 4.96373 5.02553 5.10407 5.19431 5.26823 5.46943 5.55168 5.76934 5.96707 6.32922 6.92277 7.05906 7.63723 8.59931 9.29896 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.026336 B = 0.004079 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.924128 B = 6863.493076 C = 7086.823229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.149 4.149 3 H 0.174 0.826 4 C 0.510 3.490 5 O -0.567 6.567 6 N -0.595 5.595 7 C 0.058 3.942 8 C 0.130 3.870 9 C 0.137 3.863 10 H 0.068 0.932 11 C -0.134 4.134 12 C 0.148 3.852 13 N -0.630 5.630 14 C -0.225 4.225 15 H 0.089 0.911 16 C -0.073 4.073 17 N -0.958 5.958 18 Si 0.977 3.023 19 H -0.260 1.260 20 H -0.298 1.298 21 H -0.292 1.292 22 C 0.464 3.536 23 F -0.189 7.189 24 F -0.174 7.174 25 F -0.191 7.191 26 H 0.059 0.941 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.023 0.977 38 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.348 12.468 -14.377 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.171 4.171 3 H 0.192 0.808 4 C 0.297 3.703 5 O -0.446 6.446 6 N -0.327 5.327 7 C -0.083 4.083 8 C 0.005 3.995 9 C 0.031 3.969 10 H 0.085 0.915 11 C -0.172 4.172 12 C 0.022 3.978 13 N -0.356 5.356 14 C -0.353 4.353 15 H 0.107 0.893 16 C -0.265 4.265 17 N -0.607 5.607 18 Si 0.805 3.195 19 H -0.184 1.184 20 H -0.225 1.225 21 H -0.220 1.220 22 C 0.410 3.590 23 F -0.170 7.170 24 F -0.155 7.155 25 F -0.172 7.172 26 H 0.078 0.922 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.040 0.960 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.950 11.727 -14.197 24.361 hybrid contribution 0.799 -1.110 0.779 1.574 sum -15.150 10.617 -13.418 22.854 Atomic orbital electron populations 1.22204 0.86866 1.04778 1.07666 1.22686 1.03163 1.03389 0.87825 0.80835 1.20419 0.80162 0.84424 0.85325 1.90836 1.38790 1.28286 1.86638 1.47657 1.50767 1.30198 1.04119 1.22473 0.94834 0.85651 1.05296 1.21423 0.95769 0.96103 0.86163 1.22690 0.91980 0.93971 0.88276 0.91451 1.23508 0.97060 1.00689 0.95979 1.22233 0.90759 0.95522 0.89257 1.46303 1.03443 1.48898 1.37002 1.19460 0.93948 1.14817 1.07064 0.89316 1.25657 0.95382 1.02377 1.03125 1.70046 0.99953 1.45870 1.44853 0.85026 0.78091 0.77890 0.78450 1.18362 1.22508 1.21962 1.20226 0.75319 0.77611 0.85846 1.93172 1.88363 1.38708 1.96799 1.93185 1.88333 1.80460 1.53528 1.93199 1.30821 1.96384 1.96791 0.92195 0.86258 0.87818 0.89500 0.89842 0.87735 0.89393 0.92939 0.91827 0.90735 0.94584 0.95966 0.94540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.57 71.98 0.62 -0.95 16 2 C -0.15 -2.52 1.90 -11.54 -0.02 -2.55 16 3 H 0.17 1.63 7.41 -2.38 -0.02 1.62 16 4 C 0.51 13.82 6.42 87.66 0.56 14.38 16 5 O -0.57 -22.18 12.73 -3.05 -0.04 -22.22 16 6 N -0.60 -14.07 2.79 -846.72 -2.36 -16.43 16 7 C 0.06 0.64 8.82 127.77 1.13 1.76 16 8 C 0.13 4.34 5.41 86.38 0.47 4.81 16 9 C 0.14 5.35 4.57 45.09 0.21 5.56 16 10 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 11 C -0.13 -5.53 7.25 31.25 0.23 -5.31 16 12 C 0.15 7.54 7.63 86.44 0.66 8.20 16 13 N -0.63 -32.87 3.58 -690.80 -2.48 -35.35 16 14 C -0.22 -12.68 10.51 84.03 0.88 -11.80 16 15 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 16 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 17 N -0.96 -60.46 11.32 21.65 0.25 -60.21 16 18 Si 0.98 46.89 29.55 68.60 2.03 48.91 16 19 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 22 C 0.46 10.91 2.42 71.98 0.17 11.08 16 23 F -0.19 -5.43 15.89 44.97 0.71 -4.72 16 24 F -0.17 -3.35 16.80 44.97 0.76 -2.60 16 25 F -0.19 -5.64 16.39 44.97 0.74 -4.90 16 26 H 0.06 0.82 7.80 -2.39 -0.02 0.81 16 27 H 0.12 0.57 4.56 -2.39 -0.01 0.56 16 28 H 0.10 0.60 7.80 -2.39 -0.02 0.58 16 29 H 0.09 0.57 7.07 -2.39 -0.02 0.56 16 30 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 31 H 0.10 0.49 5.87 -2.39 -0.01 0.47 16 32 H 0.09 2.62 8.11 -2.39 -0.02 2.60 16 33 H 0.05 2.24 7.27 -2.38 -0.02 2.23 16 34 H 0.06 2.96 6.55 -2.39 -0.02 2.95 16 35 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.04 2.11 6.98 -2.39 -0.02 2.09 16 37 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.25 15.07 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -79.72 317.47 6.05 -73.66 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: 1.08 Total: 2.47 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 5.37 Total: 21.38 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -4.59 Total: -112.00 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.04 Total: -22.22 kcal Atomic # 9 Polarization: -14.42 SS G_CDS: 2.21 Total: -12.21 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -79.72 6.05 -73.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316599851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.263 kcal (2) G-P(sol) polarization free energy of solvation -79.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds