Wall clock time and date at job start Tue Mar 31 2020 07:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46687 * 2 1 4 4 C 1.50691 * 109.47101 * 240.00123 * 2 1 3 5 5 O 1.21285 * 119.99962 * 240.00062 * 4 2 1 6 6 N 1.34778 * 120.00284 * 59.99620 * 4 2 1 7 7 C 1.46497 * 119.99933 * 0.02562 * 6 4 2 8 8 C 1.46495 * 120.00182 * 179.97438 * 6 4 2 9 9 C 1.53001 * 109.47249 * 264.78760 * 8 6 4 10 10 H 1.08999 * 112.73869 * 316.21094 * 9 8 6 11 11 C 1.53616 * 113.50888 * 86.99411 * 9 8 6 12 12 C 1.53498 * 83.30640 * 140.81917 * 11 9 8 13 13 N 1.47068 * 88.04919 * 333.97701 * 12 11 9 14 14 C 1.36939 * 136.06163 * 207.05749 * 13 12 11 15 15 H 1.08000 * 120.00138 * 173.90239 * 14 13 12 16 16 C 1.38808 * 119.99707 * 353.89782 * 14 13 12 17 17 N 1.31628 * 120.00210 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00065 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47174 * 60.00370 * 18 16 14 20 20 H 1.48501 * 109.47419 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47483 * 300.00253 * 18 16 14 22 22 C 1.53001 * 109.47064 * 119.99798 * 2 1 3 23 23 F 1.39900 * 109.47180 * 179.97438 * 22 2 1 24 24 F 1.39905 * 109.47356 * 300.00367 * 22 2 1 25 25 F 1.39906 * 109.47111 * 60.00203 * 22 2 1 26 26 H 1.09004 * 109.47129 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47331 * 299.99669 * 1 2 3 28 28 H 1.08997 * 109.47325 * 59.99949 * 1 2 3 29 29 H 1.09003 * 109.47044 * 268.31622 * 7 6 4 30 30 H 1.09005 * 109.46946 * 28.31065 * 7 6 4 31 31 H 1.08995 * 109.47365 * 148.30866 * 7 6 4 32 32 H 1.08999 * 109.47372 * 144.78934 * 8 6 4 33 33 H 1.09001 * 109.47089 * 24.78151 * 8 6 4 34 34 H 1.08996 * 114.20422 * 27.24201 * 11 9 8 35 35 H 1.08998 * 114.23281 * 254.39037 * 11 9 8 36 36 H 1.09003 * 113.46155 * 219.17383 * 12 11 9 37 37 H 1.09001 * 113.46958 * 88.78863 * 12 11 9 38 38 H 0.96990 * 120.00019 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2499 -2.4545 7 6 0.8649 0.9414 -2.5890 8 6 2.1955 -0.9402 -3.6507 9 6 3.4764 -0.2632 -4.1425 10 1 3.4088 0.8246 -4.1320 11 6 4.7502 -0.8035 -3.4751 12 6 5.3376 -0.6516 -4.8851 13 7 3.9746 -0.8067 -5.4152 14 6 3.4153 -1.2577 -6.5809 15 1 2.3425 -1.3509 -6.6646 16 6 4.2271 -1.5951 -7.6551 17 7 5.5345 -1.4820 -7.5530 18 14 3.4644 -2.2110 -9.2451 19 1 2.5569 -1.1716 -9.7939 20 1 4.5379 -2.5013 -10.2293 21 1 2.6919 -3.4505 -8.9760 22 6 2.0400 -0.7212 1.2493 23 9 3.4390 -0.7217 1.2490 24 9 1.5736 -0.0617 2.3916 25 9 1.5737 -2.0403 1.2493 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.1813 0.6419 -2.6522 30 1 1.0064 1.5861 -1.7215 31 1 1.1431 1.4828 -3.4931 32 1 1.4371 -0.8941 -4.4322 33 1 2.4052 -1.9821 -3.4087 34 1 4.6718 -1.8352 -3.1322 35 1 5.1862 -0.1329 -2.7347 36 1 6.0075 -1.4643 -5.1660 37 1 5.7670 0.3325 -5.0728 38 1 6.1018 -1.7180 -8.3035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316599852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:53 Heat of formation + Delta-G solvation = -122.224321 kcal Electronic energy + Delta-G solvation = -24995.569251 eV Core-core repulsion = 20846.686022 eV Total energy + Delta-G solvation = -4148.883229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.14617 -47.67777 -47.52989 -40.18650 -37.99694 -35.56432 -34.13006 -32.16733 -28.58725 -27.87760 -27.04901 -26.27432 -23.71419 -23.34462 -21.87407 -19.65631 -19.16166 -18.72116 -18.39060 -17.50897 -16.87495 -16.63661 -15.94093 -15.33625 -14.89215 -14.54180 -14.53564 -14.11540 -13.97216 -13.93959 -13.78868 -13.70980 -13.66063 -13.55257 -13.04447 -12.68963 -12.60501 -12.24463 -12.12403 -11.92453 -11.52708 -11.44806 -11.08361 -10.88688 -10.74866 -10.42634 -9.91404 -9.83477 -9.79295 -9.44961 -8.78681 -8.40112 -6.86741 -5.76642 -3.09221 2.42866 2.49239 2.96395 3.38918 3.42781 3.44715 3.55468 3.87473 3.89177 4.39547 4.46660 4.59051 4.68995 4.93477 5.10584 5.16986 5.24965 5.26811 5.45876 5.49090 5.57622 5.68947 5.85531 5.95615 6.04258 6.38589 6.44330 6.60702 6.76222 6.79743 7.25888 7.32819 7.49052 7.59320 7.98139 8.07369 9.03180 9.70564 10.66149 11.41360 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030841 B = 0.003810 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.654494 B = 7347.000886 C = 7715.055311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.163 4.163 3 H 0.137 0.863 4 C 0.518 3.482 5 O -0.512 6.512 6 N -0.601 5.601 7 C 0.070 3.930 8 C 0.114 3.886 9 C 0.130 3.870 10 H 0.040 0.960 11 C -0.159 4.159 12 C 0.157 3.843 13 N -0.600 5.600 14 C -0.221 4.221 15 H 0.079 0.921 16 C -0.005 4.005 17 N -0.917 5.917 18 Si 0.911 3.089 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.473 3.527 23 F -0.171 7.171 24 F -0.185 7.185 25 F -0.172 7.172 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.251 6.885 16.783 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.185 4.185 3 H 0.154 0.846 4 C 0.303 3.697 5 O -0.387 6.387 6 N -0.334 5.334 7 C -0.073 4.073 8 C -0.008 4.008 9 C 0.022 3.978 10 H 0.057 0.943 11 C -0.197 4.197 12 C 0.031 3.969 13 N -0.326 5.326 14 C -0.349 4.349 15 H 0.097 0.903 16 C -0.202 4.202 17 N -0.564 5.564 18 Si 0.741 3.259 19 H -0.212 1.212 20 H -0.215 1.215 21 H -0.210 1.210 22 C 0.419 3.581 23 F -0.153 7.153 24 F -0.166 7.166 25 F -0.153 7.153 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.042 0.958 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.845 6.189 16.471 20.669 hybrid contribution -0.296 -0.052 -0.820 0.874 sum -11.141 6.138 15.651 20.168 Atomic orbital electron populations 1.22105 0.89580 1.04965 1.05273 1.22625 1.01251 1.02949 0.91721 0.84560 1.19656 0.81085 0.84974 0.83985 1.90828 1.36614 1.25460 1.85804 1.47719 1.50682 1.29126 1.05903 1.22032 0.94485 0.87334 1.03420 1.21992 0.97119 0.97691 0.84007 1.22452 0.92165 0.95499 0.87730 0.94259 1.23686 0.97971 1.00808 0.97269 1.21959 0.89249 0.98722 0.86972 1.45625 1.02646 1.71933 1.12401 1.18818 0.91352 1.36591 0.88112 0.90310 1.24817 0.95533 1.01977 0.97894 1.69841 1.02226 1.53146 1.31158 0.86228 0.77858 0.78648 0.83171 1.21188 1.21545 1.21034 1.19770 0.76084 0.77892 0.84398 1.93232 1.29074 1.96332 1.96627 1.93170 1.88625 1.80915 1.53913 1.93206 1.88297 1.37176 1.96647 0.90618 0.90178 0.88777 0.92025 0.91106 0.90238 0.90640 0.89067 0.89976 0.93193 0.91759 0.95757 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.57 37.16 0.32 -0.82 16 2 C -0.16 -1.61 1.90 -91.77 -0.17 -1.78 16 3 H 0.14 0.98 7.40 -51.93 -0.38 0.59 16 4 C 0.52 7.28 6.84 -10.99 -0.08 7.20 16 5 O -0.51 -9.40 14.33 5.55 0.08 -9.32 16 6 N -0.60 -7.99 2.87 -181.58 -0.52 -8.51 16 7 C 0.07 0.61 8.82 59.85 0.53 1.13 16 8 C 0.11 1.99 5.42 -4.04 -0.02 1.97 16 9 C 0.13 2.62 4.31 -72.32 -0.31 2.31 16 10 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 11 C -0.16 -3.28 8.03 -26.15 -0.21 -3.49 16 12 C 0.16 3.83 7.26 -8.50 -0.06 3.77 16 13 N -0.60 -15.31 3.65 -176.77 -0.64 -15.96 16 14 C -0.22 -6.10 10.55 -15.06 -0.16 -6.26 16 15 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 16 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 17 N -0.92 -27.49 11.67 55.49 0.65 -26.85 16 18 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.47 5.69 2.42 37.16 0.09 5.78 16 23 F -0.17 -2.45 16.40 2.25 0.04 -2.42 16 24 F -0.18 -1.94 16.80 2.25 0.04 -1.91 16 25 F -0.17 -2.38 15.88 2.25 0.04 -2.35 16 26 H 0.07 0.61 7.80 -51.93 -0.41 0.21 16 27 H 0.08 0.43 7.80 -51.93 -0.41 0.02 16 28 H 0.09 0.51 4.56 -51.93 -0.24 0.27 16 29 H 0.06 0.42 7.06 -51.93 -0.37 0.05 16 30 H 0.07 0.42 5.88 -51.93 -0.31 0.12 16 31 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 33 H 0.09 1.80 7.00 -51.93 -0.36 1.44 16 34 H 0.08 1.79 7.94 -51.93 -0.41 1.38 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.73 7.41 -51.93 -0.38 1.35 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -33.30 321.72 -5.60 -38.90 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -4.92 Total: -2.98 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -0.17 Total: 9.59 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.52 Total: -51.32 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 9 Polarization: -6.78 SS G_CDS: 0.11 Total: -6.67 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.30 -5.60 -38.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316599852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.328 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds