Wall clock time and date at job start Tue Mar 31 2020 07:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46687 * 2 1 4 4 C 1.50691 * 109.47101 * 240.00123 * 2 1 3 5 5 O 1.21285 * 119.99962 * 240.00062 * 4 2 1 6 6 N 1.34778 * 120.00284 * 59.99620 * 4 2 1 7 7 C 1.46497 * 119.99933 * 0.02562 * 6 4 2 8 8 C 1.46495 * 120.00182 * 179.97438 * 6 4 2 9 9 C 1.53001 * 109.47249 * 264.78760 * 8 6 4 10 10 H 1.08999 * 112.73869 * 316.21094 * 9 8 6 11 11 C 1.53616 * 113.50888 * 86.99411 * 9 8 6 12 12 C 1.53498 * 83.30640 * 140.81917 * 11 9 8 13 13 N 1.47068 * 88.04919 * 333.97701 * 12 11 9 14 14 C 1.36939 * 136.06163 * 207.05749 * 13 12 11 15 15 H 1.08000 * 120.00138 * 173.90239 * 14 13 12 16 16 C 1.38808 * 119.99707 * 353.89782 * 14 13 12 17 17 N 1.31628 * 120.00210 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00065 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47174 * 60.00370 * 18 16 14 20 20 H 1.48501 * 109.47419 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47483 * 300.00253 * 18 16 14 22 22 C 1.53001 * 109.47064 * 119.99798 * 2 1 3 23 23 F 1.39900 * 109.47180 * 179.97438 * 22 2 1 24 24 F 1.39905 * 109.47356 * 300.00367 * 22 2 1 25 25 F 1.39906 * 109.47111 * 60.00203 * 22 2 1 26 26 H 1.09004 * 109.47129 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47331 * 299.99669 * 1 2 3 28 28 H 1.08997 * 109.47325 * 59.99949 * 1 2 3 29 29 H 1.09003 * 109.47044 * 268.31622 * 7 6 4 30 30 H 1.09005 * 109.46946 * 28.31065 * 7 6 4 31 31 H 1.08995 * 109.47365 * 148.30866 * 7 6 4 32 32 H 1.08999 * 109.47372 * 144.78934 * 8 6 4 33 33 H 1.09001 * 109.47089 * 24.78151 * 8 6 4 34 34 H 1.08996 * 114.20422 * 27.24201 * 11 9 8 35 35 H 1.08998 * 114.23281 * 254.39037 * 11 9 8 36 36 H 1.09003 * 113.46155 * 219.17383 * 12 11 9 37 37 H 1.09001 * 113.46958 * 88.78863 * 12 11 9 38 38 H 0.96990 * 120.00019 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2499 -2.4545 7 6 0.8649 0.9414 -2.5890 8 6 2.1955 -0.9402 -3.6507 9 6 3.4764 -0.2632 -4.1425 10 1 3.4088 0.8246 -4.1320 11 6 4.7502 -0.8035 -3.4751 12 6 5.3376 -0.6516 -4.8851 13 7 3.9746 -0.8067 -5.4152 14 6 3.4153 -1.2577 -6.5809 15 1 2.3425 -1.3509 -6.6646 16 6 4.2271 -1.5951 -7.6551 17 7 5.5345 -1.4820 -7.5530 18 14 3.4644 -2.2110 -9.2451 19 1 2.5569 -1.1716 -9.7939 20 1 4.5379 -2.5013 -10.2293 21 1 2.6919 -3.4505 -8.9760 22 6 2.0400 -0.7212 1.2493 23 9 3.4390 -0.7217 1.2490 24 9 1.5736 -0.0617 2.3916 25 9 1.5737 -2.0403 1.2493 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.1813 0.6419 -2.6522 30 1 1.0064 1.5861 -1.7215 31 1 1.1431 1.4828 -3.4931 32 1 1.4371 -0.8941 -4.4322 33 1 2.4052 -1.9821 -3.4087 34 1 4.6718 -1.8352 -3.1322 35 1 5.1862 -0.1329 -2.7347 36 1 6.0075 -1.4643 -5.1660 37 1 5.7670 0.3325 -5.0728 38 1 6.1018 -1.7180 -8.3035 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316599852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:53 Heat of formation + Delta-G solvation = -143.918911 kcal Electronic energy + Delta-G solvation = -24996.509999 eV Core-core repulsion = 20846.686022 eV Total energy + Delta-G solvation = -4149.823977 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.08809 -48.58831 -48.54362 -41.32858 -39.71786 -36.69022 -35.04359 -34.19979 -29.97530 -29.81745 -27.90488 -27.07690 -25.43244 -24.85792 -23.19439 -21.05419 -20.66368 -19.66398 -19.34701 -18.70817 -18.42255 -17.71507 -17.30983 -16.64570 -16.48758 -15.78895 -15.64272 -15.51045 -15.21175 -14.98036 -14.89709 -14.78252 -14.66814 -14.56903 -14.13492 -13.83312 -13.77966 -13.48337 -13.33366 -12.98992 -12.97246 -12.77528 -12.63939 -12.51656 -12.27686 -12.18934 -11.82445 -11.68060 -11.20187 -10.89812 -10.83948 -9.65969 -8.90763 -7.89715 -5.23375 1.45226 1.46526 1.50274 1.50605 1.56103 1.97145 2.48800 2.68140 2.98067 3.03780 3.31914 3.44514 3.60142 3.85478 3.86352 3.97619 4.20760 4.31160 4.34215 4.42399 4.60803 4.67950 4.71065 4.79853 4.84791 4.93554 5.00690 5.07640 5.17891 5.21734 5.41490 5.50968 5.70527 5.92211 6.30924 6.89872 7.01930 7.61284 8.62466 9.29167 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.030841 B = 0.003810 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.654494 B = 7347.000886 C = 7715.055311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.150 4.150 3 H 0.173 0.827 4 C 0.511 3.489 5 O -0.565 6.565 6 N -0.598 5.598 7 C 0.059 3.941 8 C 0.130 3.870 9 C 0.139 3.861 10 H 0.059 0.941 11 C -0.136 4.136 12 C 0.152 3.848 13 N -0.628 5.628 14 C -0.224 4.224 15 H 0.092 0.908 16 C -0.071 4.071 17 N -0.958 5.958 18 Si 0.980 3.020 19 H -0.272 1.272 20 H -0.298 1.298 21 H -0.277 1.277 22 C 0.466 3.534 23 F -0.189 7.189 24 F -0.174 7.174 25 F -0.188 7.188 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.027 0.973 37 H 0.021 0.979 38 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.948 8.853 17.696 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.172 4.172 3 H 0.191 0.809 4 C 0.298 3.702 5 O -0.443 6.443 6 N -0.330 5.330 7 C -0.082 4.082 8 C 0.005 3.995 9 C 0.032 3.968 10 H 0.076 0.924 11 C -0.174 4.174 12 C 0.026 3.974 13 N -0.355 5.355 14 C -0.352 4.352 15 H 0.110 0.890 16 C -0.263 4.263 17 N -0.606 5.606 18 Si 0.808 3.192 19 H -0.197 1.197 20 H -0.225 1.225 21 H -0.203 1.203 22 C 0.411 3.589 23 F -0.171 7.171 24 F -0.155 7.155 25 F -0.169 7.169 26 H 0.079 0.921 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.046 0.954 37 H 0.039 0.961 38 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.607 8.204 17.422 23.579 hybrid contribution 0.531 -0.637 -0.998 1.297 sum -13.076 7.567 16.424 22.316 Atomic orbital electron populations 1.22201 0.86984 1.04826 1.07568 1.22685 1.03101 1.03441 0.87961 0.80946 1.20388 0.80149 0.84472 0.85155 1.90814 1.38991 1.27881 1.86641 1.47711 1.50782 1.30120 1.04354 1.22437 0.94910 0.85812 1.05045 1.21468 0.95961 0.96216 0.85827 1.22528 0.93250 0.96288 0.84761 0.92360 1.23425 0.97875 1.00530 0.95592 1.21920 0.88864 0.97099 0.89496 1.45931 1.03611 1.72500 1.13431 1.19299 0.92088 1.35187 0.88635 0.88990 1.25704 0.95982 1.03198 1.01439 1.70047 1.03671 1.55233 1.31681 0.85134 0.76823 0.78445 0.78829 1.19727 1.22481 1.20269 1.20177 0.75338 0.77606 0.85735 1.93196 1.30715 1.96382 1.96785 1.93187 1.88344 1.80490 1.53525 1.93175 1.88361 1.38603 1.96792 0.92057 0.87823 0.86506 0.89508 0.87568 0.90502 0.90098 0.92100 0.91614 0.90641 0.95442 0.96147 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.57 71.98 0.62 -0.93 16 2 C -0.15 -2.45 1.90 -11.54 -0.02 -2.47 16 3 H 0.17 1.57 7.40 -2.39 -0.02 1.55 16 4 C 0.51 13.34 6.84 87.65 0.60 13.94 16 5 O -0.56 -20.69 14.33 -3.04 -0.04 -20.73 16 6 N -0.60 -14.27 2.87 -846.78 -2.43 -16.70 16 7 C 0.06 0.74 8.82 127.77 1.13 1.87 16 8 C 0.13 4.35 5.42 86.38 0.47 4.82 16 9 C 0.14 5.46 4.31 41.83 0.18 5.64 16 10 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 11 C -0.14 -5.61 8.03 30.97 0.25 -5.36 16 12 C 0.15 7.66 7.26 83.18 0.60 8.26 16 13 N -0.63 -32.33 3.65 -713.17 -2.60 -34.93 16 14 C -0.22 -12.38 10.55 84.03 0.89 -11.49 16 15 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 16 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 17 N -0.96 -59.24 11.67 21.65 0.25 -58.99 16 18 Si 0.98 45.61 29.55 68.60 2.03 47.63 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 22 C 0.47 10.37 2.42 71.98 0.17 10.55 16 23 F -0.19 -5.27 16.40 44.97 0.74 -4.53 16 24 F -0.17 -3.21 16.80 44.97 0.76 -2.46 16 25 F -0.19 -5.11 15.88 44.97 0.71 -4.39 16 26 H 0.06 0.82 7.80 -2.39 -0.02 0.80 16 27 H 0.10 0.59 7.80 -2.39 -0.02 0.57 16 28 H 0.12 0.61 4.56 -2.39 -0.01 0.60 16 29 H 0.09 0.72 7.06 -2.39 -0.02 0.70 16 30 H 0.11 0.61 5.88 -2.38 -0.01 0.60 16 31 H 0.08 1.07 8.08 -2.39 -0.02 1.06 16 32 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 33 H 0.06 2.43 7.00 -2.39 -0.02 2.42 16 34 H 0.07 2.94 7.94 -2.39 -0.02 2.92 16 35 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.03 1.55 7.41 -2.39 -0.02 1.53 16 37 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.25 14.91 8.31 -92.72 -0.77 14.14 16 Total: -1.00 -76.05 321.72 5.84 -70.21 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: 1.08 Total: 3.64 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: 5.35 Total: 21.25 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -4.78 Total: -110.62 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.04 Total: -20.73 kcal Atomic # 9 Polarization: -13.59 SS G_CDS: 2.21 Total: -11.38 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -76.05 5.84 -70.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316599852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.711 kcal (2) G-P(sol) polarization free energy of solvation -76.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds