Wall clock time and date at job start Tue Mar 31 2020 07:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47100 * 2 1 4 4 O 1.42899 * 109.47359 * 239.99707 * 2 1 3 5 5 C 1.42901 * 114.00046 * 89.99899 * 4 2 1 6 6 C 1.52996 * 109.46658 * 180.02562 * 5 4 2 7 7 C 1.53008 * 117.49517 * 243.61650 * 6 5 4 8 8 C 1.53003 * 60.00222 * 252.51430 * 7 6 5 9 9 C 1.50701 * 109.47043 * 119.99444 * 2 1 3 10 10 O 1.20823 * 120.00046 * 115.00318 * 9 2 1 11 11 O 1.34229 * 119.99800 * 294.99895 * 9 2 1 12 12 C 1.45202 * 116.99647 * 179.97438 * 11 9 2 13 13 H 1.09004 * 109.47201 * 30.00482 * 12 11 9 14 14 C 1.50702 * 109.46885 * 150.00194 * 12 11 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 12 11 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.50700 * 109.47358 * 270.00297 * 12 11 9 23 23 C 1.34511 * 125.79031 * 144.71900 * 22 12 11 24 24 C 1.41379 * 106.84521 * 179.89176 * 23 22 12 25 25 C 1.34520 * 106.83536 * 0.36719 * 24 23 22 26 26 O 1.34296 * 108.42315 * 359.77591 * 25 24 23 27 27 H 1.08999 * 109.47243 * 300.00399 * 1 2 3 28 28 H 1.08999 * 109.46794 * 60.00196 * 1 2 3 29 29 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46787 * 299.99980 * 5 4 2 31 31 H 1.08995 * 109.46971 * 60.00015 * 5 4 2 32 32 H 1.08995 * 115.55797 * 29.33227 * 6 5 4 33 33 H 1.09002 * 117.49841 * 0.02562 * 7 6 5 34 34 H 1.09004 * 117.49082 * 145.02482 * 7 6 5 35 35 H 1.09003 * 117.49838 * 252.51450 * 8 7 6 36 36 H 1.09001 * 117.49374 * 107.49041 * 8 7 6 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.08003 * 126.57938 * 0.02562 * 23 22 12 39 39 H 1.07992 * 126.58428 * 180.16419 * 24 23 22 40 40 H 1.07999 * 125.78572 * 179.75417 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2002 0.1828 -2.2941 6 6 2.7080 -0.6410 -3.4790 7 6 4.1050 -0.3209 -4.0150 8 6 2.8668 0.0758 -4.8215 9 6 2.0324 -0.7103 1.2305 10 8 2.6507 -1.7426 1.1221 11 8 1.7929 -0.1960 2.4471 12 6 2.3060 -0.9341 3.5874 13 1 3.2121 -1.4664 3.2978 14 6 2.6228 0.0255 4.7055 15 1 2.4548 1.0840 4.5725 16 6 3.1211 -0.4487 5.9004 17 7 3.3253 -1.7378 6.0624 18 14 3.5065 0.7398 7.2890 19 1 2.2698 1.4640 7.6783 20 1 4.0268 -0.0155 8.4570 21 1 4.5298 1.7159 6.8356 22 6 1.2692 -1.9236 4.0532 23 6 1.5182 -3.1477 4.5520 24 6 0.2660 -3.7271 4.8601 25 6 -0.6739 -2.8254 4.5235 26 8 -0.0604 -1.7351 4.0352 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.2538 0.6545 -2.5589 31 1 2.9320 0.9512 -2.0450 32 1 2.3872 -1.6825 -3.4996 33 1 4.6623 0.4763 -3.5230 34 1 4.7035 -1.1521 -4.3880 35 1 2.6507 -0.4943 -5.7250 36 1 2.6094 1.1343 -4.8603 37 1 3.6762 -2.0713 6.9030 38 1 2.4887 -3.6002 4.6925 39 1 0.0963 -4.7068 5.2815 40 1 -1.7408 -2.9564 4.6278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344934743.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:42 Heat of formation + Delta-G solvation = -107.585043 kcal Electronic energy + Delta-G solvation = -23761.176543 eV Core-core repulsion = 20122.492110 eV Total energy + Delta-G solvation = -3638.684433 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.18335 -41.46479 -39.52679 -37.84826 -37.23760 -35.34765 -33.53114 -32.82439 -31.39130 -28.61558 -28.10466 -26.05945 -24.54945 -23.24452 -22.46233 -22.07449 -21.66543 -21.01470 -19.09695 -18.77075 -18.39480 -17.73315 -17.32238 -17.02043 -16.81742 -16.38829 -16.21579 -15.90407 -15.14208 -14.95229 -14.59165 -14.13071 -13.86894 -13.79498 -13.51949 -13.47511 -13.26649 -13.14837 -13.01722 -12.79750 -12.66738 -12.37022 -12.23006 -12.08860 -12.02499 -11.47863 -11.41700 -11.31718 -11.19562 -10.81592 -10.51187 -10.49839 -9.11913 -8.23562 -6.54423 1.07559 1.18230 1.37804 1.44366 1.48401 1.57278 2.06436 2.33518 2.40004 2.69110 2.98579 3.02174 3.63962 3.82156 3.85387 3.95449 4.00736 4.13054 4.20770 4.33552 4.39792 4.46961 4.55726 4.62524 4.66830 4.70731 4.78532 4.78699 5.01781 5.14600 5.16622 5.21974 5.26018 5.31832 5.39803 5.45976 5.64897 5.80362 5.93003 6.04611 6.47101 6.57049 6.87167 7.17431 8.72011 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018152 B = 0.004011 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.155870 B = 6979.851234 C = 7775.038550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.108 3.892 3 H 0.126 0.874 4 O -0.386 6.386 5 C 0.085 3.915 6 C -0.176 4.176 7 C -0.187 4.187 8 C -0.148 4.148 9 C 0.443 3.557 10 O -0.538 6.538 11 O -0.349 6.349 12 C 0.302 3.698 13 H 0.038 0.962 14 C -0.557 4.557 15 H 0.078 0.922 16 C 0.023 3.977 17 N -0.891 5.891 18 Si 0.984 3.016 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.010 4.010 23 C -0.190 4.190 24 C -0.230 4.230 25 C -0.069 4.069 26 O -0.193 6.193 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.271 0.729 38 H 0.124 0.876 39 H 0.165 0.835 40 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 5.092 -14.668 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.144 0.856 4 O -0.306 6.306 5 C 0.009 3.991 6 C -0.194 4.194 7 C -0.224 4.224 8 C -0.184 4.184 9 C 0.287 3.713 10 O -0.428 6.428 11 O -0.265 6.265 12 C 0.248 3.752 13 H 0.056 0.944 14 C -0.594 4.594 15 H 0.096 0.904 16 C -0.180 4.180 17 N -0.526 5.526 18 Si 0.806 3.194 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.061 4.061 23 C -0.210 4.210 24 C -0.249 4.249 25 C -0.135 4.135 26 O -0.090 6.090 27 H 0.102 0.898 28 H 0.127 0.873 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.142 0.858 39 H 0.182 0.818 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -5.843 4.691 -14.645 16.450 hybrid contribution 0.735 -0.293 1.255 1.484 sum -5.108 4.397 -13.390 14.990 Atomic orbital electron populations 1.22176 0.90525 1.03491 1.05406 1.21512 0.96775 0.96023 0.80819 0.85625 1.87993 1.86946 1.36078 1.19610 1.22410 1.01040 0.91813 0.83802 1.22120 1.01819 1.00786 0.94682 1.23175 0.90946 1.03922 1.04398 1.23081 1.00232 1.01830 0.93296 1.24486 0.76340 0.83933 0.86547 1.90601 1.39110 1.25407 1.87670 1.86504 1.71926 1.53038 1.15040 1.18781 0.87447 0.88345 0.80592 0.94440 1.21134 1.46206 0.93915 0.98101 0.90379 1.25868 0.93940 0.97535 1.00642 1.70173 1.41795 1.13871 1.26724 0.85226 0.78990 0.78198 0.76977 1.19258 1.20283 1.18619 1.23326 0.81163 0.96478 1.05106 1.21349 0.98834 0.95111 1.05712 1.22063 0.91963 1.02605 1.08304 1.24693 1.00042 0.85182 1.03581 1.83948 1.19169 1.39904 1.65962 0.89848 0.87267 0.92866 0.89896 0.92008 0.88326 0.88409 0.88543 0.87197 0.86965 0.91985 0.85844 0.81752 0.74225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 9.51 71.98 0.68 -3.32 16 2 C 0.11 3.36 3.24 29.85 0.10 3.46 16 3 H 0.13 3.10 7.79 -2.39 -0.02 3.08 16 4 O -0.39 -12.31 9.53 -129.95 -1.24 -13.55 16 5 C 0.08 1.82 6.03 71.98 0.43 2.25 16 6 C -0.18 -3.59 6.06 -10.79 -0.07 -3.65 16 7 C -0.19 -3.33 10.18 30.60 0.31 -3.02 16 8 C -0.15 -2.02 10.25 30.60 0.31 -1.71 16 9 C 0.44 19.93 7.25 71.24 0.52 20.44 16 10 O -0.54 -28.55 15.73 28.39 0.45 -28.11 16 11 O -0.35 -17.22 9.83 -48.74 -0.48 -17.69 16 12 C 0.30 17.03 2.42 29.10 0.07 17.10 16 13 H 0.04 2.37 7.16 -2.38 -0.02 2.35 16 14 C -0.56 -31.68 8.89 25.60 0.23 -31.46 16 15 H 0.08 4.28 7.81 -2.91 -0.02 4.26 16 16 C 0.02 1.29 5.30 84.66 0.45 1.74 16 17 N -0.89 -50.77 10.49 21.45 0.23 -50.54 16 18 Si 0.98 42.80 29.54 68.60 2.03 44.82 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 22 C -0.01 -0.56 5.66 24.83 0.14 -0.42 16 23 C -0.19 -9.96 9.04 22.19 0.20 -9.76 16 24 C -0.23 -9.74 10.91 22.19 0.24 -9.50 16 25 C -0.07 -2.69 12.09 66.97 0.81 -1.88 16 26 O -0.19 -9.42 10.63 1.08 0.01 -9.41 16 27 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.11 1.85 7.87 -2.39 -0.02 1.83 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.31 7.87 -2.39 -0.02 1.29 16 31 H 0.06 1.20 7.82 -2.39 -0.02 1.18 16 32 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.10 1.68 8.03 -2.39 -0.02 1.66 16 34 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 38 H 0.12 6.87 7.51 -2.91 -0.02 6.85 16 39 H 0.16 5.66 8.06 -2.91 -0.02 5.63 16 40 H 0.24 6.32 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -74.34 349.01 6.45 -67.89 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 1.03 Total: 26.31 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: 4.43 Total: -19.73 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.23 Total: -50.54 kcal Atomic # 8 Polarization: -67.50 SS G_CDS: -1.26 Total: -68.75 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -74.34 6.45 -67.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344934743.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.698 kcal (2) G-P(sol) polarization free energy of solvation -74.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds