Wall clock time and date at job start Tue Mar 31 2020 07:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46590 * 2 1 4 4 O 1.42900 * 109.47058 * 119.99374 * 2 1 3 5 5 C 1.42891 * 114.00405 * 270.00035 * 4 2 1 6 6 C 1.53002 * 109.47460 * 179.97438 * 5 4 2 7 7 C 1.53002 * 117.50237 * 243.75094 * 6 5 4 8 8 C 1.52995 * 117.50100 * 175.08627 * 6 5 4 9 9 C 1.50698 * 109.47155 * 239.99759 * 2 1 3 10 10 O 1.20823 * 120.00082 * 244.99601 * 9 2 1 11 11 O 1.34227 * 119.99854 * 65.00100 * 9 2 1 12 12 C 1.45196 * 117.00010 * 180.02562 * 11 9 2 13 13 H 1.08998 * 109.47619 * 29.99717 * 12 11 9 14 14 C 1.50704 * 109.47352 * 149.99992 * 12 11 9 15 15 H 1.08003 * 120.00001 * 95.08028 * 14 12 11 16 16 C 1.37873 * 119.99808 * 275.07969 * 14 12 11 17 17 N 1.31511 * 120.00302 * 185.19511 * 16 14 12 18 18 Si 1.86805 * 120.00123 * 5.19424 * 16 14 12 19 19 H 1.48500 * 109.46905 * 84.98665 * 18 16 14 20 20 H 1.48502 * 109.47146 * 204.99036 * 18 16 14 21 21 H 1.48500 * 109.46938 * 324.98913 * 18 16 14 22 22 C 1.50701 * 109.47315 * 269.99706 * 12 11 9 23 23 C 1.34513 * 125.79179 * 143.25231 * 22 12 11 24 24 C 1.41385 * 106.84163 * 180.02562 * 23 22 12 25 25 C 1.34515 * 106.84185 * 359.97438 * 24 23 22 26 26 O 1.34304 * 108.42006 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.47154 * 60.00219 * 1 2 3 28 28 H 1.09003 * 109.47096 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47315 * 299.99946 * 1 2 3 30 30 H 1.08994 * 109.47662 * 300.00360 * 5 4 2 31 31 H 1.09007 * 109.47089 * 59.99972 * 5 4 2 32 32 H 1.09006 * 115.54710 * 29.41913 * 6 5 4 33 33 H 1.08993 * 117.49372 * 359.97438 * 7 6 5 34 34 H 1.08996 * 117.49397 * 145.02048 * 7 6 5 35 35 H 1.09007 * 117.50189 * 214.98265 * 8 6 5 36 36 H 1.08996 * 117.50072 * 0.02562 * 8 6 5 37 37 H 0.96998 * 120.00751 * 180.02562 * 17 16 14 38 38 H 1.07997 * 126.57781 * 359.97438 * 23 22 12 39 39 H 1.08003 * 126.58185 * 180.02562 * 24 23 22 40 40 H 1.08003 * 125.79292 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2001 0.1830 2.2940 6 6 2.7079 -0.6406 3.4793 7 6 1.8105 -0.7274 4.7155 8 6 3.0877 0.1155 4.7539 9 6 2.0323 -0.7104 -1.2304 10 8 2.6507 -1.7428 -1.1218 11 8 1.7929 -0.1963 -2.4470 12 6 2.3060 -0.9345 -3.5872 13 1 2.3337 -1.9978 -3.3491 14 6 1.4084 -0.7093 -4.7766 15 1 1.6477 0.0602 -5.4958 16 6 0.2818 -1.4855 -4.9468 17 7 -0.4455 -1.3595 -6.0353 18 14 -0.2119 -2.7165 -3.6312 19 1 -1.0155 -2.0303 -2.5879 20 1 -1.0201 -3.8002 -4.2456 21 1 1.0077 -3.2974 -3.0144 22 6 3.6978 -0.4557 -3.9105 23 6 4.7149 -1.2251 -4.3384 24 6 5.8279 -0.3714 -4.5157 25 6 5.4243 0.8687 -4.1862 26 8 4.1333 0.8116 -3.8202 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.9319 0.9514 2.0450 31 1 1.2537 0.6548 2.5588 32 1 3.2967 -1.5211 3.2220 33 1 0.8586 -0.1974 4.6845 34 1 1.8094 -1.6649 5.2716 35 1 3.9262 -0.2677 5.3355 36 1 2.9755 1.1997 4.7484 37 1 -1.2383 -1.9053 -6.1549 38 1 4.6869 -2.2906 -4.5122 39 1 6.8129 -0.6595 -4.8521 40 1 6.0347 1.7593 -4.2116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344934745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:48 Heat of formation + Delta-G solvation = -89.756188 kcal Electronic energy + Delta-G solvation = -23891.747801 eV Core-core repulsion = 20253.836485 eV Total energy + Delta-G solvation = -3637.911316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83990 -39.78435 -38.39700 -36.77290 -35.52736 -33.17898 -32.29906 -31.59739 -30.32188 -27.16979 -27.14993 -24.43368 -22.77221 -22.59001 -21.14328 -20.94866 -20.33312 -19.45261 -17.58409 -17.41929 -16.80957 -16.52592 -16.11403 -15.49243 -15.32211 -15.10849 -14.74589 -14.55329 -14.23083 -13.45783 -13.17448 -12.85424 -12.67876 -12.39504 -12.17697 -12.12084 -12.04199 -11.82259 -11.73442 -11.57106 -11.31129 -11.01053 -10.97493 -10.66607 -10.47226 -10.09652 -9.82977 -9.74049 -9.69828 -9.42991 -9.24355 -8.97594 -7.75220 -6.52179 -4.61825 2.40978 2.86735 2.90280 3.14586 3.19709 3.27193 3.31632 3.57955 3.73863 4.01236 4.10447 4.61668 4.67565 4.84276 4.89755 5.01295 5.10622 5.17751 5.31095 5.33277 5.39324 5.49504 5.54144 5.63825 5.64986 5.76032 5.79059 5.86705 5.93711 6.04550 6.24376 6.28574 6.43312 6.55928 6.73537 7.06470 7.12251 7.14936 7.41155 7.88170 8.03859 8.56838 8.63547 9.03837 10.55947 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.005149 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.349365 B = 5437.028582 C = 6898.514780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 H 0.094 0.906 4 O -0.358 6.358 5 C 0.090 3.910 6 C -0.151 4.151 7 C -0.177 4.177 8 C -0.174 4.174 9 C 0.445 3.555 10 O -0.504 6.504 11 O -0.352 6.352 12 C 0.246 3.754 13 H 0.088 0.912 14 C -0.503 4.503 15 H 0.091 0.909 16 C 0.095 3.905 17 N -0.857 5.857 18 Si 0.861 3.139 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.251 1.251 22 C 0.031 3.969 23 C -0.225 4.225 24 C -0.210 4.210 25 C -0.071 4.071 26 O -0.169 6.169 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.276 0.724 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 4.295 15.118 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.033 3.967 3 H 0.111 0.889 4 O -0.277 6.277 5 C 0.014 3.986 6 C -0.169 4.169 7 C -0.214 4.214 8 C -0.211 4.211 9 C 0.287 3.713 10 O -0.392 6.392 11 O -0.270 6.270 12 C 0.195 3.805 13 H 0.105 0.895 14 C -0.538 4.538 15 H 0.109 0.891 16 C -0.115 4.115 17 N -0.491 5.491 18 Si 0.686 3.314 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.176 1.176 22 C -0.020 4.020 23 C -0.245 4.245 24 C -0.230 4.230 25 C -0.139 4.139 26 O -0.064 6.064 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 4.779 3.963 15.071 16.299 hybrid contribution -0.070 -0.536 0.405 0.675 sum 4.708 3.427 15.476 16.535 Atomic orbital electron populations 1.22212 0.92971 1.03893 1.03591 1.21543 0.95424 0.96072 0.83673 0.88868 1.88011 1.86682 1.34221 1.18742 1.22106 0.99071 0.92059 0.85369 1.22126 1.03996 1.02493 0.88286 1.23078 0.94907 1.02087 1.01363 1.22981 0.99293 0.98823 1.00034 1.23356 0.77292 0.84282 0.86389 1.90594 1.37605 1.23487 1.87563 1.87147 1.71156 1.55038 1.13638 1.19905 0.84583 0.93152 0.82886 0.89489 1.20832 1.08733 1.21046 1.03196 0.89093 1.25071 0.95030 0.96244 0.95143 1.69854 1.15489 1.38690 1.25093 0.87047 0.80464 0.81467 0.82398 1.18752 1.20177 1.17553 1.23219 0.96755 0.80812 1.01232 1.21394 0.92528 1.00842 1.09695 1.21679 1.00087 0.93344 1.07841 1.23834 0.83703 0.99684 1.06665 1.84067 1.25074 1.30171 1.67098 0.89524 0.91376 0.91415 0.92683 0.92914 0.86628 0.88666 0.88633 0.88430 0.88673 0.91362 0.83934 0.84165 0.78967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.50 37.16 0.35 -2.20 16 2 C 0.09 1.57 3.24 -27.88 -0.09 1.48 16 3 H 0.09 1.34 7.79 -51.93 -0.40 0.93 16 4 O -0.36 -6.02 9.53 -55.13 -0.53 -6.55 16 5 C 0.09 1.11 6.03 37.16 0.22 1.33 16 6 C -0.15 -1.67 6.05 -90.62 -0.55 -2.22 16 7 C -0.18 -1.60 10.18 -26.69 -0.27 -1.87 16 8 C -0.17 -1.46 10.25 -26.69 -0.27 -1.74 16 9 C 0.45 9.86 7.25 36.00 0.26 10.12 16 10 O -0.50 -12.52 15.73 -25.46 -0.40 -12.92 16 11 O -0.35 -8.44 9.47 -41.79 -0.40 -8.84 16 12 C 0.25 6.24 1.74 -29.03 -0.05 6.19 16 13 H 0.09 2.29 4.75 -51.93 -0.25 2.04 16 14 C -0.50 -13.99 9.23 -34.44 -0.32 -14.31 16 15 H 0.09 2.73 8.05 -52.48 -0.42 2.31 16 16 C 0.09 2.61 5.47 -17.82 -0.10 2.51 16 17 N -0.86 -24.38 13.96 55.43 0.77 -23.61 16 18 Si 0.86 20.88 27.35 -169.99 -4.65 16.23 16 19 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.25 -6.20 6.13 56.52 0.35 -5.86 16 22 C 0.03 0.73 6.16 -35.62 -0.22 0.51 16 23 C -0.23 -4.81 10.81 -39.70 -0.43 -5.24 16 24 C -0.21 -3.77 10.91 -39.70 -0.43 -4.21 16 25 C -0.07 -1.26 12.09 29.42 0.36 -0.90 16 26 O -0.17 -3.72 10.64 2.92 0.03 -3.69 16 27 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 0.79 7.87 -51.93 -0.41 0.38 16 30 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.05 0.55 7.60 -51.92 -0.39 0.15 16 32 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.09 0.79 8.03 -51.93 -0.42 0.37 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.14 2.84 8.06 -52.49 -0.42 2.42 16 39 H 0.14 2.02 8.06 -52.48 -0.42 1.59 16 40 H 0.19 2.42 8.06 -52.48 -0.42 2.00 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -32.29 349.45 -7.15 -39.44 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.71 Total: 5.19 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.54 Total: -10.53 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.77 Total: -23.61 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -1.29 Total: -31.99 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.65 Total: 16.23 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.29 -7.15 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344934745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.318 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds