Wall clock time and date at job start Tue Mar 31 2020 07:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46590 * 2 1 4 4 O 1.42900 * 109.47058 * 119.99374 * 2 1 3 5 5 C 1.42891 * 114.00405 * 270.00035 * 4 2 1 6 6 C 1.53002 * 109.47460 * 179.97438 * 5 4 2 7 7 C 1.53002 * 117.50237 * 243.75094 * 6 5 4 8 8 C 1.52995 * 117.50100 * 175.08627 * 6 5 4 9 9 C 1.50698 * 109.47155 * 239.99759 * 2 1 3 10 10 O 1.20823 * 120.00082 * 244.99601 * 9 2 1 11 11 O 1.34227 * 119.99854 * 65.00100 * 9 2 1 12 12 C 1.45196 * 117.00010 * 180.02562 * 11 9 2 13 13 H 1.08998 * 109.47619 * 29.99717 * 12 11 9 14 14 C 1.50704 * 109.47352 * 149.99992 * 12 11 9 15 15 H 1.08003 * 120.00001 * 95.08028 * 14 12 11 16 16 C 1.37873 * 119.99808 * 275.07969 * 14 12 11 17 17 N 1.31511 * 120.00302 * 185.19511 * 16 14 12 18 18 Si 1.86805 * 120.00123 * 5.19424 * 16 14 12 19 19 H 1.48500 * 109.46905 * 84.98665 * 18 16 14 20 20 H 1.48502 * 109.47146 * 204.99036 * 18 16 14 21 21 H 1.48500 * 109.46938 * 324.98913 * 18 16 14 22 22 C 1.50701 * 109.47315 * 269.99706 * 12 11 9 23 23 C 1.34513 * 125.79179 * 143.25231 * 22 12 11 24 24 C 1.41385 * 106.84163 * 180.02562 * 23 22 12 25 25 C 1.34515 * 106.84185 * 359.97438 * 24 23 22 26 26 O 1.34304 * 108.42006 * 0.02562 * 25 24 23 27 27 H 1.08996 * 109.47154 * 60.00219 * 1 2 3 28 28 H 1.09003 * 109.47096 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47315 * 299.99946 * 1 2 3 30 30 H 1.08994 * 109.47662 * 300.00360 * 5 4 2 31 31 H 1.09007 * 109.47089 * 59.99972 * 5 4 2 32 32 H 1.09006 * 115.54710 * 29.41913 * 6 5 4 33 33 H 1.08993 * 117.49372 * 359.97438 * 7 6 5 34 34 H 1.08996 * 117.49397 * 145.02048 * 7 6 5 35 35 H 1.09007 * 117.50189 * 214.98265 * 8 6 5 36 36 H 1.08996 * 117.50072 * 0.02562 * 8 6 5 37 37 H 0.96998 * 120.00751 * 180.02562 * 17 16 14 38 38 H 1.07997 * 126.57781 * 359.97438 * 23 22 12 39 39 H 1.08003 * 126.58185 * 180.02562 * 24 23 22 40 40 H 1.08003 * 125.79292 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2001 0.1830 2.2940 6 6 2.7079 -0.6406 3.4793 7 6 1.8105 -0.7274 4.7155 8 6 3.0877 0.1155 4.7539 9 6 2.0323 -0.7104 -1.2304 10 8 2.6507 -1.7428 -1.1218 11 8 1.7929 -0.1963 -2.4470 12 6 2.3060 -0.9345 -3.5872 13 1 2.3337 -1.9978 -3.3491 14 6 1.4084 -0.7093 -4.7766 15 1 1.6477 0.0602 -5.4958 16 6 0.2818 -1.4855 -4.9468 17 7 -0.4455 -1.3595 -6.0353 18 14 -0.2119 -2.7165 -3.6312 19 1 -1.0155 -2.0303 -2.5879 20 1 -1.0201 -3.8002 -4.2456 21 1 1.0077 -3.2974 -3.0144 22 6 3.6978 -0.4557 -3.9105 23 6 4.7149 -1.2251 -4.3384 24 6 5.8279 -0.3714 -4.5157 25 6 5.4243 0.8687 -4.1862 26 8 4.1333 0.8116 -3.8202 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 2.9319 0.9514 2.0450 31 1 1.2537 0.6548 2.5588 32 1 3.2967 -1.5211 3.2220 33 1 0.8586 -0.1974 4.6845 34 1 1.8094 -1.6649 5.2716 35 1 3.9262 -0.2677 5.3355 36 1 2.9755 1.1997 4.7484 37 1 -1.2383 -1.9053 -6.1549 38 1 4.6869 -2.2906 -4.5122 39 1 6.8129 -0.6595 -4.8521 40 1 6.0347 1.7593 -4.2116 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344934745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:48 Heat of formation + Delta-G solvation = -108.617307 kcal Electronic energy + Delta-G solvation = -23892.565681 eV Core-core repulsion = 20253.836485 eV Total energy + Delta-G solvation = -3638.729196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.44259 -41.48636 -39.55581 -37.86587 -37.23917 -35.22146 -33.93718 -33.01344 -31.96704 -28.95138 -28.11735 -25.98168 -24.53890 -23.25483 -22.69884 -22.07136 -21.67576 -21.10869 -19.60085 -18.93707 -18.33336 -17.97588 -17.78049 -16.88682 -16.79361 -16.53429 -16.26270 -15.97327 -15.21936 -15.15565 -14.77231 -14.30808 -14.06560 -13.99295 -13.70919 -13.60942 -13.41719 -13.32528 -13.17692 -12.90518 -12.74911 -12.38575 -12.10260 -12.02576 -11.82863 -11.64492 -11.56334 -11.35195 -11.26826 -11.02077 -10.81100 -10.54543 -9.36346 -8.64134 -6.79196 0.80729 1.13873 1.16512 1.22011 1.30390 1.47116 1.77069 2.07233 2.18847 2.58092 2.86970 2.99725 3.62484 3.76892 3.84360 3.90175 3.95586 4.02447 4.12055 4.14163 4.22912 4.29068 4.36161 4.43797 4.62581 4.65879 4.71789 4.77709 4.89659 4.99267 5.00521 5.03466 5.09361 5.19061 5.21340 5.24645 5.55890 5.67870 5.95555 6.01451 6.27812 6.33479 6.84115 6.90250 8.49086 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.005149 C = 0.004058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.349365 B = 5437.028582 C = 6898.514780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.100 3.900 3 H 0.124 0.876 4 O -0.385 6.385 5 C 0.085 3.915 6 C -0.179 4.179 7 C -0.173 4.173 8 C -0.156 4.156 9 C 0.437 3.563 10 O -0.538 6.538 11 O -0.358 6.358 12 C 0.255 3.745 13 H 0.071 0.929 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.910 3.090 19 H -0.249 1.249 20 H -0.257 1.257 21 H -0.265 1.265 22 C -0.020 4.020 23 C -0.230 4.230 24 C -0.215 4.215 25 C -0.055 4.055 26 O -0.189 6.189 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.284 0.716 38 H 0.146 0.854 39 H 0.181 0.819 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.699 5.555 17.480 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.041 3.959 3 H 0.142 0.858 4 O -0.304 6.304 5 C 0.009 3.991 6 C -0.198 4.198 7 C -0.210 4.210 8 C -0.193 4.193 9 C 0.280 3.720 10 O -0.428 6.428 11 O -0.276 6.276 12 C 0.203 3.797 13 H 0.089 0.911 14 C -0.554 4.554 15 H 0.072 0.928 16 C -0.147 4.147 17 N -0.531 5.531 18 Si 0.732 3.268 19 H -0.173 1.173 20 H -0.182 1.182 21 H -0.190 1.190 22 C -0.070 4.070 23 C -0.249 4.249 24 C -0.234 4.234 25 C -0.121 4.121 26 O -0.086 6.086 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.164 0.836 39 H 0.198 0.802 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 5.575 5.233 17.442 19.044 hybrid contribution -0.134 -0.856 -0.269 0.907 sum 5.441 4.377 17.173 18.538 Atomic orbital electron populations 1.22235 0.91246 1.03399 1.05420 1.21583 0.96467 0.96335 0.81511 0.85820 1.87988 1.86885 1.36035 1.19525 1.22401 1.00674 0.91959 0.84058 1.22092 1.05820 1.02777 0.89092 1.23186 0.95580 1.02648 0.99594 1.23096 0.99200 0.99561 0.97395 1.24459 0.76420 0.84090 0.86996 1.90566 1.39199 1.25170 1.87859 1.87016 1.71398 1.54625 1.14519 1.19425 0.85411 0.92500 0.82329 0.91126 1.20796 1.09793 1.20630 1.04230 0.92761 1.25650 0.94774 0.97595 0.96701 1.69919 1.16426 1.40192 1.26565 0.86306 0.79920 0.80088 0.80503 1.17283 1.18156 1.18956 1.22969 0.96803 0.82205 1.05029 1.21773 0.93437 1.01463 1.08222 1.22107 1.00783 0.92677 1.07840 1.24975 0.82081 1.01650 1.03420 1.84024 1.27325 1.29405 1.67820 0.90090 0.93016 0.87178 0.91747 0.90488 0.88908 0.87583 0.88289 0.87544 0.87108 0.90643 0.83645 0.80170 0.73646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.66 9.50 71.98 0.68 -3.98 16 2 C 0.10 3.27 3.24 29.85 0.10 3.36 16 3 H 0.12 3.25 7.79 -2.39 -0.02 3.23 16 4 O -0.38 -12.49 9.53 -129.95 -1.24 -13.73 16 5 C 0.08 1.87 6.03 71.98 0.43 2.30 16 6 C -0.18 -3.69 6.05 -10.79 -0.07 -3.75 16 7 C -0.17 -2.69 10.18 30.62 0.31 -2.38 16 8 C -0.16 -2.18 10.25 30.62 0.31 -1.86 16 9 C 0.44 19.52 7.25 71.24 0.52 20.04 16 10 O -0.54 -27.37 15.73 28.39 0.45 -26.92 16 11 O -0.36 -17.59 9.47 -48.96 -0.46 -18.05 16 12 C 0.26 13.49 1.74 29.10 0.05 13.54 16 13 H 0.07 3.90 4.75 -2.39 -0.01 3.89 16 14 C -0.52 -30.35 9.23 25.60 0.24 -30.11 16 15 H 0.05 3.48 8.05 -2.91 -0.02 3.46 16 16 C 0.06 3.36 5.47 84.65 0.46 3.82 16 17 N -0.90 -52.57 13.96 21.45 0.30 -52.27 16 18 Si 0.91 43.99 27.35 68.60 1.88 45.87 16 19 H -0.25 -11.37 7.11 99.48 0.71 -10.66 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.26 -13.29 6.13 99.48 0.61 -12.68 16 22 C -0.02 -0.95 6.16 24.83 0.15 -0.80 16 23 C -0.23 -9.85 10.81 22.19 0.24 -9.61 16 24 C -0.22 -7.25 10.91 22.19 0.24 -7.00 16 25 C -0.05 -1.79 12.09 66.97 0.81 -0.98 16 26 O -0.19 -8.32 10.64 0.09 0.00 -8.32 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.11 2.14 7.87 -2.39 -0.02 2.13 16 30 H 0.06 1.27 8.08 -2.39 -0.02 1.25 16 31 H 0.08 1.31 7.60 -2.38 -0.02 1.29 16 32 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 33 H 0.11 1.42 8.03 -2.39 -0.02 1.40 16 34 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.15 5.94 8.06 -2.91 -0.02 5.92 16 39 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.25 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -74.81 349.45 6.35 -68.47 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.94 Total: 22.37 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 4.49 Total: -17.42 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.30 Total: -52.27 kcal Atomic # 8 Polarization: -65.76 SS G_CDS: -1.25 Total: -67.02 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.87 kcal Total: -74.81 6.35 -68.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344934745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.152 kcal (2) G-P(sol) polarization free energy of solvation -74.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds