Wall clock time and date at job start Tue Mar 31 2020 07:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 O 1.42895 * 109.47356 * 119.99901 * 2 1 3 5 5 C 1.42900 * 113.99907 * 270.00043 * 4 2 1 6 6 C 1.53001 * 109.47050 * 179.97438 * 5 4 2 7 7 C 1.52998 * 117.50107 * 243.74709 * 6 5 4 8 8 C 1.52997 * 117.50222 * 175.08635 * 6 5 4 9 9 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 10 10 O 1.20826 * 119.99622 * 244.99871 * 9 2 1 11 11 O 1.34232 * 120.00173 * 64.99940 * 9 2 1 12 12 C 1.45192 * 116.99763 * 180.02562 * 11 9 2 13 13 H 1.09003 * 109.47394 * 329.99411 * 12 11 9 14 14 C 1.50704 * 109.46888 * 210.00243 * 12 11 9 15 15 H 1.07994 * 119.99700 * 359.97438 * 14 12 11 16 16 C 1.37881 * 120.00056 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00065 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99808 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46916 * 60.00153 * 18 16 14 20 20 H 1.48504 * 109.46838 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47612 * 299.99973 * 18 16 14 22 22 C 1.50694 * 109.47503 * 89.99888 * 12 11 9 23 23 C 1.34519 * 125.79159 * 219.99902 * 22 12 11 24 24 C 1.41384 * 106.83717 * 180.02562 * 23 22 12 25 25 C 1.34510 * 106.84599 * 359.97438 * 24 23 22 26 26 O 1.34303 * 125.78869 * 39.69227 * 22 12 11 27 27 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 29 29 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.08997 * 109.47436 * 299.99279 * 5 4 2 31 31 H 1.08999 * 109.47072 * 60.00107 * 5 4 2 32 32 H 1.09000 * 115.55286 * 29.41769 * 6 5 4 33 33 H 1.09010 * 117.49837 * 359.97438 * 7 6 5 34 34 H 1.08997 * 117.50543 * 145.02197 * 7 6 5 35 35 H 1.08997 * 117.50180 * 214.97991 * 8 6 5 36 36 H 1.09007 * 117.49751 * 0.02562 * 8 6 5 37 37 H 0.96999 * 119.99847 * 179.97438 * 17 16 14 38 38 H 1.08001 * 126.57782 * 0.03205 * 23 22 12 39 39 H 1.08004 * 126.57509 * 179.97438 * 24 23 22 40 40 H 1.07997 * 125.79074 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 0.1830 2.2940 6 6 2.7080 -0.6407 3.4791 7 6 1.8107 -0.7276 4.7153 8 6 3.0878 0.1153 4.7539 9 6 2.0323 -0.7104 -1.2305 10 8 2.6506 -1.7428 -1.1219 11 8 1.7929 -0.1963 -2.4471 12 6 2.3060 -0.9344 -3.5873 13 1 3.2121 -1.4667 -3.2977 14 6 2.6228 0.0249 -4.7055 15 1 2.4549 1.0834 -4.5725 16 6 3.1261 -0.4488 -5.8985 17 7 3.3302 -1.7379 -6.0605 18 14 3.5182 0.7403 -7.2847 19 1 4.5400 1.7154 -6.8262 20 1 4.0420 -0.0147 -8.4513 21 1 2.2837 1.4655 -7.6789 22 6 1.2693 -1.9240 -4.0530 23 6 1.5115 -3.1804 -4.4682 24 6 0.2619 -3.7469 -4.8096 25 6 -0.6692 -2.8031 -4.5821 26 8 -0.0538 -1.7030 -4.1185 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.9320 0.9514 2.0450 31 1 1.2538 0.6547 2.5588 32 1 3.2968 -1.5211 3.2218 33 1 0.8586 -0.1975 4.6845 34 1 1.8094 -1.6649 5.2716 35 1 3.9263 -0.2679 5.3354 36 1 2.9756 1.1996 4.7484 37 1 3.6839 -2.0712 -6.8999 38 1 2.4754 -3.6636 -4.5289 39 1 0.0883 -4.7459 -5.1817 40 1 -1.7318 -2.9130 -4.7409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344934746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:52 Heat of formation + Delta-G solvation = -90.335318 kcal Electronic energy + Delta-G solvation = -23739.821316 eV Core-core repulsion = 20101.884887 eV Total energy + Delta-G solvation = -3637.936429 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.34218 -39.79092 -38.40076 -36.77523 -35.52914 -33.31339 -31.70409 -31.55262 -29.55069 -27.18216 -26.68009 -24.52282 -22.79774 -22.57861 -20.97417 -20.68583 -20.21033 -19.22882 -17.38442 -17.20530 -16.67298 -16.36957 -15.69959 -15.47740 -15.21836 -14.88466 -14.53454 -14.45553 -14.30478 -13.50671 -12.99223 -12.75249 -12.53893 -12.16409 -12.01163 -11.82750 -11.75476 -11.62738 -11.55670 -11.27133 -11.15192 -11.01088 -10.93150 -10.65891 -10.48019 -10.39302 -10.10191 -9.76655 -9.42959 -9.35807 -8.81860 -8.64623 -7.25438 -6.21852 -4.40297 2.76886 2.88386 3.00517 3.23235 3.26700 3.29789 3.58001 3.87803 4.03527 4.19205 4.28197 4.62555 4.68168 4.87798 4.94786 5.05684 5.08794 5.15768 5.32189 5.40064 5.41473 5.49483 5.65735 5.74341 5.77779 5.86275 5.87497 6.04700 6.07440 6.22881 6.36560 6.70355 6.98719 7.09530 7.15725 7.23413 7.37442 7.69048 7.69781 7.84859 8.36227 8.51526 8.77263 9.26485 10.76933 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.003934 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.006682 B = 7115.236070 C = 7905.687557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.099 3.901 3 H 0.095 0.905 4 O -0.357 6.357 5 C 0.091 3.909 6 C -0.151 4.151 7 C -0.178 4.178 8 C -0.174 4.174 9 C 0.453 3.547 10 O -0.495 6.495 11 O -0.346 6.346 12 C 0.299 3.701 13 H 0.079 0.921 14 C -0.532 4.532 15 H 0.078 0.922 16 C 0.070 3.930 17 N -0.867 5.867 18 Si 0.915 3.085 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.026 3.974 23 C -0.178 4.178 24 C -0.217 4.217 25 C -0.088 4.088 26 O -0.177 6.177 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.116 0.884 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.269 0.731 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.688 3.471 14.309 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.039 3.961 3 H 0.112 0.888 4 O -0.276 6.276 5 C 0.014 3.986 6 C -0.169 4.169 7 C -0.215 4.215 8 C -0.211 4.211 9 C 0.294 3.706 10 O -0.382 6.382 11 O -0.263 6.263 12 C 0.246 3.754 13 H 0.096 0.904 14 C -0.569 4.569 15 H 0.096 0.904 16 C -0.136 4.136 17 N -0.501 5.501 18 Si 0.741 3.259 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.025 4.025 23 C -0.197 4.197 24 C -0.237 4.237 25 C -0.156 4.156 26 O -0.073 6.073 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.079 0.921 38 H 0.159 0.841 39 H 0.149 0.851 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -4.516 3.066 14.236 15.247 hybrid contribution 0.179 0.258 -1.158 1.200 sum -4.337 3.324 13.079 14.174 Atomic orbital electron populations 1.22176 0.92853 1.03932 1.03419 1.21378 0.95368 0.95913 0.83401 0.88756 1.88015 1.86685 1.34162 1.18692 1.22113 0.99100 0.92052 0.85296 1.22127 1.03986 1.02527 0.88260 1.23080 0.94893 1.02101 1.01396 1.22983 0.99298 0.98821 1.00044 1.23108 0.77553 0.84149 0.85823 1.90633 1.37042 1.23208 1.87283 1.86521 1.72030 1.53225 1.14507 1.19197 0.88042 0.88396 0.79748 0.90358 1.20841 1.45077 0.93751 0.97268 0.90437 1.24948 0.94528 0.95770 0.98382 1.70026 1.41638 1.12224 1.26252 0.86277 0.78930 0.80344 0.80324 1.19712 1.20926 1.19843 1.23518 0.80556 0.95679 1.02775 1.21214 0.97870 0.94408 1.06226 1.21690 0.93664 1.00253 1.08066 1.23596 0.97991 0.86305 1.07688 1.83981 1.20350 1.37188 1.65800 0.91218 0.91453 0.89735 0.92557 0.92904 0.86556 0.88684 0.88631 0.88415 0.88671 0.92065 0.84132 0.85137 0.79876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.50 37.16 0.35 -1.89 16 2 C 0.10 1.57 3.24 -27.88 -0.09 1.48 16 3 H 0.09 1.24 7.79 -51.93 -0.40 0.84 16 4 O -0.36 -5.71 9.53 -55.14 -0.53 -6.24 16 5 C 0.09 1.05 6.03 37.16 0.22 1.27 16 6 C -0.15 -1.61 6.05 -90.62 -0.55 -2.15 16 7 C -0.18 -1.53 10.18 -26.70 -0.27 -1.81 16 8 C -0.17 -1.41 10.25 -26.70 -0.27 -1.69 16 9 C 0.45 9.75 7.25 36.01 0.26 10.01 16 10 O -0.49 -12.26 15.73 -25.46 -0.40 -12.66 16 11 O -0.35 -8.19 9.84 -41.35 -0.41 -8.60 16 12 C 0.30 7.98 2.42 -29.04 -0.07 7.91 16 13 H 0.08 2.25 7.15 -51.93 -0.37 1.88 16 14 C -0.53 -14.66 8.89 -34.44 -0.31 -14.96 16 15 H 0.08 2.08 7.81 -52.49 -0.41 1.67 16 16 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 17 N -0.87 -24.03 10.95 55.43 0.61 -23.42 16 18 Si 0.91 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 C 0.03 0.67 5.53 -35.63 -0.20 0.48 16 23 C -0.18 -4.48 9.17 -39.70 -0.36 -4.84 16 24 C -0.22 -4.70 10.91 -39.70 -0.43 -5.13 16 25 C -0.09 -1.83 12.09 29.41 0.36 -1.47 16 26 O -0.18 -4.34 10.65 4.33 0.05 -4.29 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.07 0.70 7.87 -51.93 -0.41 0.29 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 31 H 0.05 0.51 7.60 -51.93 -0.39 0.11 16 32 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.09 0.75 8.03 -51.92 -0.42 0.33 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.14 3.63 7.87 -52.49 -0.41 3.22 16 39 H 0.13 2.39 8.06 -52.48 -0.42 1.97 16 40 H 0.18 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -32.07 349.86 -7.64 -39.71 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.76 Total: 5.45 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -1.46 Total: -11.01 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.61 Total: -23.42 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.29 Total: -31.79 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.07 -7.64 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344934746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.629 kcal (2) G-P(sol) polarization free energy of solvation -32.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds