Wall clock time and date at job start Tue Mar 31 2020 07:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 O 1.42895 * 109.47356 * 119.99901 * 2 1 3 5 5 C 1.42900 * 113.99907 * 270.00043 * 4 2 1 6 6 C 1.53001 * 109.47050 * 179.97438 * 5 4 2 7 7 C 1.52998 * 117.50107 * 243.74709 * 6 5 4 8 8 C 1.52997 * 117.50222 * 175.08635 * 6 5 4 9 9 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 10 10 O 1.20826 * 119.99622 * 244.99871 * 9 2 1 11 11 O 1.34232 * 120.00173 * 64.99940 * 9 2 1 12 12 C 1.45192 * 116.99763 * 180.02562 * 11 9 2 13 13 H 1.09003 * 109.47394 * 329.99411 * 12 11 9 14 14 C 1.50704 * 109.46888 * 210.00243 * 12 11 9 15 15 H 1.07994 * 119.99700 * 359.97438 * 14 12 11 16 16 C 1.37881 * 120.00056 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00065 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99808 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46916 * 60.00153 * 18 16 14 20 20 H 1.48504 * 109.46838 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47612 * 299.99973 * 18 16 14 22 22 C 1.50694 * 109.47503 * 89.99888 * 12 11 9 23 23 C 1.34519 * 125.79159 * 219.99902 * 22 12 11 24 24 C 1.41384 * 106.83717 * 180.02562 * 23 22 12 25 25 C 1.34510 * 106.84599 * 359.97438 * 24 23 22 26 26 O 1.34303 * 125.78869 * 39.69227 * 22 12 11 27 27 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 29 29 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 30 30 H 1.08997 * 109.47436 * 299.99279 * 5 4 2 31 31 H 1.08999 * 109.47072 * 60.00107 * 5 4 2 32 32 H 1.09000 * 115.55286 * 29.41769 * 6 5 4 33 33 H 1.09010 * 117.49837 * 359.97438 * 7 6 5 34 34 H 1.08997 * 117.50543 * 145.02197 * 7 6 5 35 35 H 1.08997 * 117.50180 * 214.97991 * 8 6 5 36 36 H 1.09007 * 117.49751 * 0.02562 * 8 6 5 37 37 H 0.96999 * 119.99847 * 179.97438 * 17 16 14 38 38 H 1.08001 * 126.57782 * 0.03205 * 23 22 12 39 39 H 1.08004 * 126.57509 * 179.97438 * 24 23 22 40 40 H 1.07997 * 125.79074 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 0.1830 2.2940 6 6 2.7080 -0.6407 3.4791 7 6 1.8107 -0.7276 4.7153 8 6 3.0878 0.1153 4.7539 9 6 2.0323 -0.7104 -1.2305 10 8 2.6506 -1.7428 -1.1219 11 8 1.7929 -0.1963 -2.4471 12 6 2.3060 -0.9344 -3.5873 13 1 3.2121 -1.4667 -3.2977 14 6 2.6228 0.0249 -4.7055 15 1 2.4549 1.0834 -4.5725 16 6 3.1261 -0.4488 -5.8985 17 7 3.3302 -1.7379 -6.0605 18 14 3.5182 0.7403 -7.2847 19 1 4.5400 1.7154 -6.8262 20 1 4.0420 -0.0147 -8.4513 21 1 2.2837 1.4655 -7.6789 22 6 1.2693 -1.9240 -4.0530 23 6 1.5115 -3.1804 -4.4682 24 6 0.2619 -3.7469 -4.8096 25 6 -0.6692 -2.8031 -4.5821 26 8 -0.0538 -1.7030 -4.1185 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.9320 0.9514 2.0450 31 1 1.2538 0.6547 2.5588 32 1 3.2968 -1.5211 3.2218 33 1 0.8586 -0.1975 4.6845 34 1 1.8094 -1.6649 5.2716 35 1 3.9263 -0.2679 5.3354 36 1 2.9756 1.1996 4.7484 37 1 3.6839 -2.0712 -6.8999 38 1 2.4754 -3.6636 -4.5289 39 1 0.0883 -4.7459 -5.1817 40 1 -1.7318 -2.9130 -4.7409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344934746.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:51 Heat of formation + Delta-G solvation = -108.382964 kcal Electronic energy + Delta-G solvation = -23740.603921 eV Core-core repulsion = 20101.884887 eV Total energy + Delta-G solvation = -3638.719034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.18952 -41.46781 -39.52838 -37.84437 -37.23383 -35.32351 -33.55932 -32.83071 -31.40616 -28.61216 -28.08676 -26.07134 -24.56409 -23.23363 -22.47383 -22.06516 -21.66372 -21.01758 -19.09952 -18.79034 -18.39097 -17.82147 -17.30701 -16.97248 -16.72113 -16.40730 -16.25091 -15.77109 -15.38171 -14.92635 -14.63027 -14.05101 -13.89918 -13.76530 -13.51869 -13.45299 -13.25171 -13.15301 -13.04881 -12.80067 -12.70701 -12.36520 -12.22798 -12.07642 -12.01672 -11.52709 -11.40333 -11.32643 -11.12397 -10.81002 -10.53075 -10.51617 -9.13131 -8.24783 -6.54181 1.05629 1.17909 1.37921 1.44408 1.48682 1.57562 2.05027 2.33539 2.40053 2.70848 2.97959 3.01504 3.64305 3.81875 3.88536 3.96372 3.98399 4.13436 4.20288 4.32165 4.38450 4.47399 4.53569 4.61941 4.67530 4.71303 4.77858 4.79655 5.02526 5.13260 5.15320 5.23418 5.26524 5.29362 5.39026 5.43620 5.65017 5.78890 5.92231 6.04758 6.47260 6.56294 6.86710 7.17606 8.72383 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.003934 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.006682 B = 7115.236070 C = 7905.687557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.107 3.893 3 H 0.127 0.873 4 O -0.387 6.387 5 C 0.085 3.915 6 C -0.181 4.181 7 C -0.172 4.172 8 C -0.157 4.157 9 C 0.443 3.557 10 O -0.538 6.538 11 O -0.349 6.349 12 C 0.301 3.699 13 H 0.039 0.961 14 C -0.557 4.557 15 H 0.078 0.922 16 C 0.023 3.977 17 N -0.892 5.892 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.278 1.278 21 H -0.267 1.267 22 C -0.004 4.004 23 C -0.194 4.194 24 C -0.229 4.229 25 C -0.068 4.068 26 O -0.192 6.192 27 H 0.052 0.948 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.271 0.729 38 H 0.119 0.881 39 H 0.165 0.835 40 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.671 5.053 14.862 17.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.144 0.856 4 O -0.306 6.306 5 C 0.010 3.990 6 C -0.199 4.199 7 C -0.209 4.209 8 C -0.194 4.194 9 C 0.287 3.713 10 O -0.428 6.428 11 O -0.265 6.265 12 C 0.247 3.753 13 H 0.056 0.944 14 C -0.594 4.594 15 H 0.096 0.904 16 C -0.180 4.180 17 N -0.527 5.527 18 Si 0.806 3.194 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.192 1.192 22 C -0.055 4.055 23 C -0.214 4.214 24 C -0.248 4.248 25 C -0.134 4.134 26 O -0.089 6.089 27 H 0.071 0.929 28 H 0.127 0.873 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.137 0.863 39 H 0.183 0.817 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -6.505 4.658 14.820 16.842 hybrid contribution 0.786 -0.327 -1.225 1.492 sum -5.719 4.332 13.595 15.372 Atomic orbital electron populations 1.22171 0.90557 1.03470 1.05386 1.21516 0.96769 0.96053 0.80811 0.85572 1.87995 1.86968 1.36099 1.19572 1.22401 1.00789 0.91879 0.83932 1.22099 1.05834 1.02766 0.89197 1.23189 0.95590 1.02598 0.99517 1.23096 0.99237 0.99605 0.97464 1.24491 0.76347 0.83932 0.86546 1.90601 1.39113 1.25399 1.87672 1.86508 1.71941 1.53030 1.15028 1.18773 0.87438 0.88445 0.80616 0.94369 1.21126 1.46179 0.93950 0.98147 0.90371 1.25874 0.93937 0.97534 1.00659 1.70173 1.41832 1.13922 1.26754 0.85227 0.79010 0.78198 0.76974 1.18595 1.20320 1.19209 1.23286 0.81411 0.96022 1.04763 1.21287 0.98676 0.94730 1.06690 1.22041 0.92023 1.02188 1.08517 1.24697 1.00107 0.84363 1.04253 1.83952 1.19560 1.38889 1.66470 0.92888 0.87318 0.89828 0.91708 0.90206 0.89089 0.87386 0.88370 0.87710 0.87031 0.92017 0.86251 0.81700 0.74204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 9.50 71.98 0.68 -3.32 16 2 C 0.11 3.35 3.24 29.85 0.10 3.45 16 3 H 0.13 3.10 7.79 -2.39 -0.02 3.08 16 4 O -0.39 -12.33 9.53 -129.95 -1.24 -13.57 16 5 C 0.09 1.84 6.03 71.98 0.43 2.27 16 6 C -0.18 -3.71 6.05 -10.79 -0.07 -3.78 16 7 C -0.17 -2.64 10.18 30.62 0.31 -2.32 16 8 C -0.16 -2.21 10.25 30.62 0.31 -1.90 16 9 C 0.44 19.90 7.25 71.24 0.52 20.41 16 10 O -0.54 -28.50 15.73 28.38 0.45 -28.06 16 11 O -0.35 -17.20 9.84 -49.45 -0.49 -17.68 16 12 C 0.30 16.96 2.42 29.10 0.07 17.03 16 13 H 0.04 2.41 7.15 -2.39 -0.02 2.39 16 14 C -0.56 -31.74 8.89 25.60 0.23 -31.51 16 15 H 0.08 4.29 7.81 -2.91 -0.02 4.27 16 16 C 0.02 1.28 5.30 84.66 0.45 1.73 16 17 N -0.89 -51.09 10.95 21.45 0.23 -50.86 16 18 Si 0.98 42.88 29.54 68.60 2.03 44.90 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 20 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 C 0.00 -0.23 5.53 24.83 0.14 -0.09 16 23 C -0.19 -10.14 9.17 22.19 0.20 -9.93 16 24 C -0.23 -9.64 10.91 22.19 0.24 -9.40 16 25 C -0.07 -2.65 12.09 66.97 0.81 -1.84 16 26 O -0.19 -9.38 10.65 -1.21 -0.01 -9.40 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.11 1.84 7.87 -2.39 -0.02 1.83 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.06 1.25 8.08 -2.39 -0.02 1.23 16 31 H 0.08 1.27 7.60 -2.39 -0.02 1.25 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.11 1.37 8.03 -2.38 -0.02 1.35 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 38 H 0.12 6.60 7.87 -2.91 -0.02 6.58 16 39 H 0.17 5.64 8.06 -2.91 -0.02 5.62 16 40 H 0.24 6.32 8.06 -2.91 -0.02 6.29 16 Total: -1.00 -74.60 349.86 6.43 -68.17 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 1.03 Total: 25.69 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 4.43 Total: -19.21 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.23 Total: -50.86 kcal Atomic # 8 Polarization: -67.41 SS G_CDS: -1.29 Total: -68.70 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -74.60 6.43 -68.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344934746.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.211 kcal (2) G-P(sol) polarization free energy of solvation -74.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds