Wall clock time and date at job start Tue Mar 31 2020 07:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46728 * 179.97438 * 4 3 2 6 6 C 1.50705 * 115.55258 * 34.33535 * 5 4 3 7 7 O 1.20825 * 120.00077 * 145.57927 * 6 5 4 8 8 O 1.34227 * 119.99514 * 325.57948 * 6 5 4 9 9 C 1.45203 * 116.99660 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47121 * 329.99756 * 9 8 6 11 11 C 1.50695 * 109.47129 * 209.99911 * 9 8 6 12 12 H 1.08002 * 120.00049 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99880 * 179.97438 * 11 9 8 14 14 N 1.31507 * 119.99966 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99734 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47308 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47006 * 120.00121 * 15 13 11 18 18 H 1.48499 * 109.47335 * 240.00384 * 15 13 11 19 19 C 1.50699 * 109.47027 * 89.99731 * 9 8 6 20 20 C 1.34518 * 125.79008 * 219.71127 * 19 9 8 21 21 C 1.41379 * 106.84119 * 179.89052 * 20 19 9 22 22 C 1.34519 * 106.83970 * 0.37606 * 21 20 19 23 23 O 1.34304 * 125.78809 * 40.02727 * 19 9 8 24 24 C 1.53006 * 117.49936 * 248.62030 * 5 4 3 25 25 C 1.53000 * 60.00083 * 252.51494 * 24 5 4 26 26 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 28 28 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 29 29 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 30 30 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 31 31 H 1.09000 * 109.47187 * 300.00233 * 4 3 2 32 32 H 1.09001 * 109.46558 * 60.00281 * 4 3 2 33 33 H 0.97006 * 119.99744 * 179.97438 * 14 13 11 34 34 H 1.07996 * 126.57593 * 0.03626 * 20 19 9 35 35 H 1.07995 * 126.58185 * 180.16825 * 21 20 19 36 36 H 1.08002 * 125.78600 * 179.74202 * 22 21 20 37 37 H 1.08996 * 117.49984 * 0.02562 * 24 5 4 38 38 H 1.09004 * 117.49682 * 145.02599 * 24 5 4 39 39 H 1.08997 * 117.49978 * 252.51236 * 25 24 5 40 40 H 1.09002 * 117.51743 * 107.47874 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 6 2.9077 3.8564 0.7658 7 8 3.3599 4.8117 1.3513 8 8 1.5881 3.6126 0.7975 9 6 0.7647 4.5388 1.5542 10 1 1.3467 4.9534 2.3772 11 6 -0.4347 3.8108 2.1040 12 1 -0.5650 2.7573 1.9050 13 6 -1.3653 4.4894 2.8619 14 7 -1.2065 5.7721 3.1046 15 14 -2.8526 3.5871 3.5427 16 1 -2.7988 2.1618 3.1296 17 1 -2.8476 3.6728 5.0252 18 1 -4.0934 4.2093 3.0151 19 6 0.3050 5.6548 0.6518 20 6 0.2185 6.9541 0.9891 21 6 -0.2516 7.6431 -0.1524 22 6 -0.4322 6.7225 -1.1164 23 8 -0.0935 5.5199 -0.6236 24 6 4.4860 3.4927 -1.2639 25 6 5.3187 3.2711 0.0003 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9767 0.8908 32 1 3.8339 0.9765 -0.8892 33 1 -1.8614 6.2496 3.6375 34 1 0.4635 7.3880 1.9472 35 1 -0.4342 8.7044 -0.2338 36 1 -0.7894 6.9173 -2.1169 37 1 4.6393 2.8044 -2.0950 38 1 4.2569 4.5216 -1.5417 39 1 5.6374 4.1540 0.5543 40 1 6.0201 2.4367 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344935695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:43 Heat of formation + Delta-G solvation = -86.588843 kcal Electronic energy + Delta-G solvation = -24863.419758 eV Core-core repulsion = 21225.645788 eV Total energy + Delta-G solvation = -3637.773970 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.26578 -39.86554 -37.83607 -36.61752 -35.18450 -33.16161 -31.63206 -31.01659 -29.57248 -27.01269 -26.48210 -24.04399 -22.53759 -22.39022 -22.27586 -20.50823 -19.59190 -18.82028 -17.20342 -16.70090 -16.58743 -16.02148 -15.82034 -15.21801 -14.98354 -14.71818 -14.49024 -14.38906 -13.56076 -13.28464 -13.02367 -12.78027 -12.17575 -11.99721 -11.90583 -11.61018 -11.56088 -11.48981 -11.24934 -11.09921 -11.06339 -10.92154 -10.80445 -10.57175 -10.31020 -10.10592 -9.91350 -9.56450 -9.26454 -9.18075 -8.74895 -8.57877 -7.17998 -6.13399 -4.29013 2.80688 2.94385 3.24230 3.30428 3.34666 3.52830 3.74127 3.98686 4.05251 4.27844 4.33541 4.78463 4.92220 4.98363 5.14292 5.29057 5.36042 5.37592 5.55350 5.59660 5.64434 5.66772 5.85004 5.90127 5.96235 6.06807 6.12917 6.14535 6.27792 6.45983 6.58766 6.83160 7.06817 7.22840 7.31168 7.51103 7.55394 7.77697 7.79664 7.98142 8.45463 8.66279 8.93979 9.36738 10.85801 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.007204 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.787623 B = 3885.722944 C = 5138.197138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.349 6.349 4 C 0.104 3.896 5 C -0.139 4.139 6 C 0.494 3.506 7 O -0.524 6.524 8 O -0.309 6.309 9 C 0.293 3.707 10 H 0.074 0.926 11 C -0.519 4.519 12 H 0.079 0.921 13 C 0.067 3.933 14 N -0.870 5.870 15 Si 0.911 3.089 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.031 3.969 20 C -0.182 4.182 21 C -0.218 4.218 22 C -0.091 4.091 23 O -0.174 6.174 24 C -0.145 4.145 25 C -0.139 4.139 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.266 0.734 34 H 0.140 0.860 35 H 0.129 0.871 36 H 0.183 0.817 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.990 -7.368 -7.724 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.268 6.268 4 C 0.027 3.973 5 C -0.140 4.140 6 C 0.337 3.663 7 O -0.415 6.415 8 O -0.223 6.223 9 C 0.239 3.761 10 H 0.092 0.908 11 C -0.556 4.556 12 H 0.097 0.903 13 C -0.138 4.138 14 N -0.505 5.505 15 Si 0.737 3.263 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.020 4.020 20 C -0.202 4.202 21 C -0.238 4.238 22 C -0.158 4.158 23 O -0.071 6.071 24 C -0.182 4.182 25 C -0.176 4.176 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.200 0.800 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.131 0.869 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.829 -7.035 -7.585 12.974 hybrid contribution -0.966 -0.016 0.493 1.084 sum 6.863 -7.051 -7.093 12.129 Atomic orbital electron populations 1.21706 0.93497 1.01246 1.04335 1.22392 0.96133 0.84182 0.98893 1.88295 1.18402 1.25014 1.95043 1.21790 0.83767 0.91766 0.99994 1.20995 0.94368 0.94903 1.03725 1.21963 0.83626 0.82830 0.77877 1.90600 1.77584 1.29987 1.43334 1.86735 1.16308 1.52792 1.66460 1.19177 0.88894 0.82592 0.85433 0.90841 1.20924 1.05982 0.96788 1.31936 0.90259 1.24948 0.98302 0.94993 0.95600 1.70050 1.35752 1.07646 1.37079 0.86232 0.81629 0.79925 0.78484 1.19284 1.20709 1.20797 1.23591 1.00118 0.96856 0.81466 1.21205 1.07513 0.92657 0.98789 1.21676 1.07950 0.99452 0.94713 1.23583 1.09270 0.83210 0.99776 1.84012 1.64777 1.31819 1.26454 1.23141 1.01207 1.02977 0.90870 1.23105 0.89832 1.04188 1.00513 0.91976 0.90812 0.91820 0.94343 0.93975 0.92839 0.92884 0.92400 0.84214 0.85266 0.80018 0.87512 0.87933 0.86880 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 10.28 37.16 0.38 -1.80 16 2 C 0.06 0.85 6.66 37.16 0.25 1.10 16 3 O -0.35 -6.17 7.99 -58.00 -0.46 -6.63 16 4 C 0.10 1.49 6.06 37.16 0.23 1.71 16 5 C -0.14 -2.24 2.54 -155.65 -0.40 -2.64 16 6 C 0.49 10.91 7.45 36.01 0.27 11.18 16 7 O -0.52 -12.70 15.48 -18.75 -0.29 -12.99 16 8 O -0.31 -7.67 7.61 -47.58 -0.36 -8.03 16 9 C 0.29 8.00 2.42 -29.04 -0.07 7.93 16 10 H 0.07 2.16 7.15 -51.93 -0.37 1.79 16 11 C -0.52 -14.57 8.89 -34.44 -0.31 -14.88 16 12 H 0.08 2.20 7.81 -52.49 -0.41 1.79 16 13 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 14 N -0.87 -24.55 10.92 55.43 0.61 -23.94 16 15 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.03 0.83 5.54 -35.62 -0.20 0.63 16 20 C -0.18 -4.69 9.16 -39.70 -0.36 -5.05 16 21 C -0.22 -4.83 10.91 -39.70 -0.43 -5.27 16 22 C -0.09 -1.94 12.09 29.42 0.36 -1.59 16 23 O -0.17 -4.44 10.65 4.47 0.05 -4.39 16 24 C -0.14 -1.88 9.88 -26.73 -0.26 -2.14 16 25 C -0.14 -1.74 9.76 -26.73 -0.26 -2.00 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.60 7.90 -51.93 -0.41 0.19 16 33 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 34 H 0.14 3.68 7.85 -52.49 -0.41 3.27 16 35 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 36 H 0.18 2.97 8.06 -52.49 -0.42 2.54 16 37 H 0.11 1.07 8.05 -51.93 -0.42 0.66 16 38 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.11 1.54 7.67 -51.93 -0.40 1.14 16 40 H 0.11 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -32.83 346.43 -6.95 -39.78 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -5.78 Total: 5.86 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.91 Total: -11.08 kcal Atomic # 7 Polarization: -24.55 SS G_CDS: 0.61 Total: -23.94 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.07 Total: -32.05 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.83 -6.95 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344935695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.807 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds