Wall clock time and date at job start Tue Mar 31 2020 07:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46728 * 179.97438 * 4 3 2 6 6 C 1.50705 * 115.55258 * 34.33535 * 5 4 3 7 7 O 1.20825 * 120.00077 * 145.57927 * 6 5 4 8 8 O 1.34227 * 119.99514 * 325.57948 * 6 5 4 9 9 C 1.45203 * 116.99660 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.47121 * 329.99756 * 9 8 6 11 11 C 1.50695 * 109.47129 * 209.99911 * 9 8 6 12 12 H 1.08002 * 120.00049 * 0.02562 * 11 9 8 13 13 C 1.37879 * 119.99880 * 179.97438 * 11 9 8 14 14 N 1.31507 * 119.99966 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99734 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47308 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47006 * 120.00121 * 15 13 11 18 18 H 1.48499 * 109.47335 * 240.00384 * 15 13 11 19 19 C 1.50699 * 109.47027 * 89.99731 * 9 8 6 20 20 C 1.34518 * 125.79008 * 219.71127 * 19 9 8 21 21 C 1.41379 * 106.84119 * 179.89052 * 20 19 9 22 22 C 1.34519 * 106.83970 * 0.37606 * 21 20 19 23 23 O 1.34304 * 125.78809 * 40.02727 * 19 9 8 24 24 C 1.53006 * 117.49936 * 248.62030 * 5 4 3 25 25 C 1.53000 * 60.00083 * 252.51494 * 24 5 4 26 26 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 28 28 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 29 29 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 30 30 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 31 31 H 1.09000 * 109.47187 * 300.00233 * 4 3 2 32 32 H 1.09001 * 109.46558 * 60.00281 * 4 3 2 33 33 H 0.97006 * 119.99744 * 179.97438 * 14 13 11 34 34 H 1.07996 * 126.57593 * 0.03626 * 20 19 9 35 35 H 1.07995 * 126.58185 * 180.16825 * 21 20 19 36 36 H 1.08002 * 125.78600 * 179.74202 * 22 21 20 37 37 H 1.08996 * 117.49984 * 0.02562 * 24 5 4 38 38 H 1.09004 * 117.49682 * 145.02599 * 24 5 4 39 39 H 1.08997 * 117.49978 * 252.51236 * 25 24 5 40 40 H 1.09002 * 117.51743 * 107.47874 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 6 2.9077 3.8564 0.7658 7 8 3.3599 4.8117 1.3513 8 8 1.5881 3.6126 0.7975 9 6 0.7647 4.5388 1.5542 10 1 1.3467 4.9534 2.3772 11 6 -0.4347 3.8108 2.1040 12 1 -0.5650 2.7573 1.9050 13 6 -1.3653 4.4894 2.8619 14 7 -1.2065 5.7721 3.1046 15 14 -2.8526 3.5871 3.5427 16 1 -2.7988 2.1618 3.1296 17 1 -2.8476 3.6728 5.0252 18 1 -4.0934 4.2093 3.0151 19 6 0.3050 5.6548 0.6518 20 6 0.2185 6.9541 0.9891 21 6 -0.2516 7.6431 -0.1524 22 6 -0.4322 6.7225 -1.1164 23 8 -0.0935 5.5199 -0.6236 24 6 4.4860 3.4927 -1.2639 25 6 5.3187 3.2711 0.0003 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9767 0.8908 32 1 3.8339 0.9765 -0.8892 33 1 -1.8614 6.2496 3.6375 34 1 0.4635 7.3880 1.9472 35 1 -0.4342 8.7044 -0.2338 36 1 -0.7894 6.9173 -2.1169 37 1 4.6393 2.8044 -2.0950 38 1 4.2569 4.5216 -1.5417 39 1 5.6374 4.1540 0.5543 40 1 6.0201 2.4367 0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344935695.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:42 Heat of formation + Delta-G solvation = -105.914786 kcal Electronic energy + Delta-G solvation = -24864.257794 eV Core-core repulsion = 21225.645788 eV Total energy + Delta-G solvation = -3638.612006 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.17657 -41.47665 -39.14663 -38.00872 -36.85269 -35.23853 -33.55014 -32.14585 -31.53685 -28.66719 -27.97334 -25.76128 -24.12789 -23.58233 -23.40061 -22.38591 -21.43374 -20.48494 -18.93987 -18.46030 -18.29606 -17.56695 -17.07147 -16.91241 -16.64297 -16.40163 -16.25670 -15.79470 -15.01211 -14.79246 -14.40928 -14.31262 -13.87677 -13.61935 -13.49003 -13.31431 -13.17313 -13.01450 -12.89119 -12.83561 -12.55988 -12.33604 -12.18568 -11.98672 -11.92000 -11.61985 -11.32435 -11.25053 -11.18424 -10.80161 -10.52689 -10.29776 -9.11774 -8.22350 -6.48673 1.09989 1.21417 1.36986 1.38728 1.51774 1.88463 2.11830 2.39451 2.42002 2.59460 2.92628 3.02426 3.69604 3.80863 3.84257 3.93435 4.20709 4.27512 4.36840 4.38933 4.52133 4.54234 4.60151 4.64127 4.66069 4.68511 4.82084 4.89559 4.94097 5.12729 5.15161 5.15767 5.32153 5.36201 5.43895 5.53279 5.71107 5.85019 6.00301 6.48995 6.51902 6.62142 7.01098 7.23218 8.75410 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.012257 B = 0.007204 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.787623 B = 3885.722944 C = 5138.197138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.395 6.395 4 C 0.104 3.896 5 C -0.171 4.171 6 C 0.480 3.520 7 O -0.561 6.561 8 O -0.317 6.317 9 C 0.296 3.704 10 H 0.032 0.968 11 C -0.541 4.541 12 H 0.072 0.928 13 C 0.021 3.979 14 N -0.894 5.894 15 Si 0.978 3.022 16 H -0.261 1.261 17 H -0.271 1.271 18 H -0.277 1.277 19 C 0.002 3.998 20 C -0.198 4.198 21 C -0.227 4.227 22 C -0.072 4.072 23 O -0.194 6.194 24 C -0.129 4.129 25 C -0.116 4.116 26 H 0.094 0.906 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.269 0.731 34 H 0.120 0.880 35 H 0.166 0.834 36 H 0.240 0.760 37 H 0.148 0.852 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.283 -8.900 -9.939 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.019 4.019 3 O -0.315 6.315 4 C 0.028 3.972 5 C -0.172 4.172 6 C 0.326 3.674 7 O -0.454 6.454 8 O -0.231 6.231 9 C 0.242 3.758 10 H 0.050 0.950 11 C -0.578 4.578 12 H 0.090 0.910 13 C -0.182 4.182 14 N -0.530 5.530 15 Si 0.801 3.199 16 H -0.185 1.185 17 H -0.196 1.196 18 H -0.203 1.203 19 C -0.049 4.049 20 C -0.217 4.217 21 C -0.246 4.246 22 C -0.139 4.139 23 O -0.091 6.091 24 C -0.166 4.166 25 C -0.153 4.153 26 H 0.113 0.887 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.138 0.862 35 H 0.184 0.816 36 H 0.256 0.744 37 H 0.166 0.834 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.145 -8.575 -9.807 15.364 hybrid contribution -0.988 0.545 1.129 1.597 sum 7.157 -8.030 -8.678 13.821 Atomic orbital electron populations 1.21728 0.94648 1.02567 1.01772 1.22555 0.95298 0.83174 1.00899 1.88245 1.20564 1.27227 1.95446 1.21997 0.82435 0.90398 1.02380 1.21259 0.95097 0.95031 1.05809 1.23285 0.83132 0.83375 0.77620 1.90559 1.77763 1.32014 1.45086 1.86745 1.17954 1.52268 1.66135 1.18714 0.88598 0.83242 0.85255 0.95030 1.21114 1.06899 0.96675 1.33153 0.90967 1.25839 1.01006 0.95816 0.95494 1.70187 1.36587 1.08916 1.37275 0.85209 0.77643 0.78981 0.78094 1.18453 1.19632 1.20257 1.23360 1.02183 0.96948 0.82408 1.21280 1.08027 0.93100 0.99331 1.22029 1.07841 1.01439 0.93269 1.24678 1.06316 0.81360 1.01509 1.83980 1.65314 1.33979 1.25825 1.23341 0.99207 1.02748 0.91312 1.23290 0.88021 1.04829 0.99130 0.88702 0.94571 0.93063 0.91062 0.92940 0.91937 0.88668 0.92225 0.86204 0.81632 0.74406 0.83404 0.89809 0.88789 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 10.28 71.98 0.74 -3.59 16 2 C 0.06 1.50 6.66 71.98 0.48 1.98 16 3 O -0.40 -13.83 7.99 -127.21 -1.02 -14.85 16 4 C 0.10 2.76 6.06 71.98 0.44 3.20 16 5 C -0.17 -5.39 2.54 -52.92 -0.13 -5.53 16 6 C 0.48 22.30 7.45 71.24 0.53 22.83 16 7 O -0.56 -29.19 15.48 21.97 0.34 -28.85 16 8 O -0.32 -16.72 7.61 -43.41 -0.33 -17.05 16 9 C 0.30 17.35 2.42 29.10 0.07 17.42 16 10 H 0.03 2.07 7.15 -2.39 -0.02 2.05 16 11 C -0.54 -32.11 8.89 25.60 0.23 -31.88 16 12 H 0.07 4.25 7.81 -2.91 -0.02 4.23 16 13 C 0.02 1.19 5.30 84.66 0.45 1.64 16 14 N -0.89 -52.54 10.92 21.45 0.23 -52.31 16 15 Si 0.98 44.50 29.54 68.60 2.03 46.53 16 16 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 C 0.00 0.09 5.54 24.83 0.14 0.23 16 20 C -0.20 -10.59 9.16 22.19 0.20 -10.38 16 21 C -0.23 -9.84 10.91 22.19 0.24 -9.60 16 22 C -0.07 -2.96 12.09 66.97 0.81 -2.15 16 23 O -0.19 -10.01 10.65 -1.33 -0.01 -10.02 16 24 C -0.13 -3.05 9.88 30.60 0.30 -2.75 16 25 C -0.12 -2.63 9.76 30.60 0.30 -2.34 16 26 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 1.69 7.90 -2.39 -0.02 1.67 16 33 H 0.27 14.82 8.31 -92.70 -0.77 14.05 16 34 H 0.12 6.76 7.85 -2.91 -0.02 6.74 16 35 H 0.17 5.82 8.06 -2.91 -0.02 5.79 16 36 H 0.24 6.70 8.06 -2.91 -0.02 6.68 16 37 H 0.15 2.27 8.05 -2.39 -0.02 2.25 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.09 2.52 7.67 -2.39 -0.02 2.50 16 40 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -78.79 346.43 7.06 -71.73 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 1.03 Total: 25.73 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 4.79 Total: -20.92 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.23 Total: -52.31 kcal Atomic # 8 Polarization: -69.75 SS G_CDS: -1.02 Total: -70.77 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -78.79 7.06 -71.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344935695.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.181 kcal (2) G-P(sol) polarization free energy of solvation -78.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds