Wall clock time and date at job start Tue Mar 31 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46913 * 2 1 4 4 C 1.52998 * 109.47302 * 119.99194 * 2 1 3 5 5 C 1.50699 * 113.00150 * 180.50269 * 4 2 1 6 6 O 1.20823 * 120.00302 * 344.86324 * 5 4 2 7 7 O 1.34237 * 119.99865 * 164.86780 * 5 4 2 8 8 C 1.45200 * 116.99520 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.47425 * 329.99891 * 8 7 5 10 10 C 1.50700 * 109.46604 * 209.99689 * 8 7 5 11 11 H 1.08005 * 120.00022 * 264.82979 * 10 8 7 12 12 C 1.37872 * 120.00252 * 84.83236 * 10 8 7 13 13 N 1.31519 * 119.99753 * 358.26758 * 12 10 8 14 14 Si 1.86800 * 120.00409 * 178.26201 * 12 10 8 15 15 H 1.48495 * 109.47225 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47330 * 300.00554 * 14 12 10 17 17 H 1.48501 * 109.46742 * 60.00310 * 14 12 10 18 18 C 1.50703 * 109.47131 * 90.00216 * 8 7 5 19 19 C 1.34517 * 125.78700 * 215.94809 * 18 8 7 20 20 C 1.41381 * 106.83965 * 179.88343 * 19 18 8 21 21 C 1.34520 * 106.83943 * 0.37153 * 20 19 18 22 22 O 1.34300 * 125.78933 * 36.24591 * 18 8 7 23 23 C 1.54035 * 113.92749 * 312.43902 * 4 2 1 24 24 O 1.44179 * 85.51824 * 91.65803 * 23 4 2 25 25 C 1.44175 * 93.34412 * 24.19228 * 24 23 4 26 26 H 1.08999 * 109.47098 * 300.66243 * 1 2 3 27 27 H 1.08997 * 109.47073 * 60.66329 * 1 2 3 28 28 H 1.09003 * 109.47120 * 180.66034 * 1 2 3 29 29 H 1.08992 * 109.47296 * 239.99840 * 2 1 3 30 30 H 1.09001 * 109.47077 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47280 * 299.99514 * 3 2 1 32 32 H 1.08995 * 109.48001 * 59.99776 * 3 2 1 33 33 H 0.97001 * 119.99912 * 354.78183 * 13 12 10 34 34 H 1.07994 * 126.58107 * 0.02562 * 19 18 8 35 35 H 1.07994 * 126.58059 * 180.16092 * 20 19 18 36 36 H 1.08003 * 125.78710 * 179.74385 * 21 20 19 37 37 H 1.08998 * 113.86279 * 205.79931 * 23 4 2 38 38 H 1.08997 * 113.86431 * 337.51130 * 23 4 2 39 39 H 1.08999 * 113.86936 * 221.66794 * 25 24 23 40 40 H 1.08996 * 113.98119 * 89.96521 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5441 -0.7569 1.3357 6 8 4.2115 -0.5005 0.3617 7 8 4.1424 -1.0737 2.4949 8 6 5.5943 -1.0890 2.5046 9 1 5.9614 -1.3581 1.5142 10 6 6.0791 -2.0997 3.5118 11 1 6.3352 -1.7845 4.5127 12 6 6.1958 -3.4265 3.1559 13 7 5.8517 -3.8159 1.9477 14 14 6.8428 -4.6712 4.3894 15 1 6.8717 -6.0181 3.7648 16 1 8.2165 -4.2889 4.8043 17 1 5.9551 -4.6958 5.5796 18 6 6.1086 0.2777 2.8768 19 6 7.2133 0.8642 2.3815 20 6 7.3164 2.1315 2.9998 21 6 6.2731 2.2402 3.8420 22 8 5.5450 1.1144 3.7632 23 6 1.3525 -0.2739 2.5532 24 8 0.4265 -1.3498 2.3008 25 6 1.3700 -2.0859 1.4967 26 1 -0.3633 0.5241 0.8840 27 1 -0.3633 0.5035 -0.8959 28 1 -0.3633 -1.0276 0.0118 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9565 0.8899 33 1 5.4454 -3.1857 1.3324 34 1 7.8901 0.4480 1.6501 35 1 8.0869 2.8691 2.8311 36 1 6.0579 3.0887 4.4746 37 1 1.9626 -0.4173 3.4450 38 1 0.9027 0.7174 2.4970 39 1 0.9342 -2.5317 0.6026 40 1 1.9864 -2.7833 2.0641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345974475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:02 Heat of formation + Delta-G solvation = -92.768204 kcal Electronic energy + Delta-G solvation = -25122.661990 eV Core-core repulsion = 21484.620063 eV Total energy + Delta-G solvation = -3638.041927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.89222 -41.19790 -38.87256 -35.97606 -34.44064 -33.39550 -32.32431 -30.32949 -29.12572 -27.29414 -26.41621 -26.28448 -23.50470 -22.70558 -21.53066 -21.01016 -19.83734 -18.33817 -17.71170 -17.11345 -17.03386 -16.43297 -15.86246 -15.49517 -15.27766 -14.84849 -14.47064 -13.98327 -13.89690 -13.29474 -13.09094 -13.03945 -12.65599 -12.24380 -12.16220 -12.05223 -12.02718 -11.88756 -11.64827 -11.31871 -11.06609 -11.04065 -10.90287 -10.69789 -10.31432 -10.28181 -9.90433 -9.57353 -9.37497 -9.35379 -9.09887 -8.85008 -7.79949 -6.83966 -4.67927 2.38000 2.81150 3.15065 3.26261 3.31187 3.47931 3.52659 3.71271 3.82323 4.24111 4.38842 4.65124 4.95793 5.12714 5.20592 5.30357 5.39082 5.52271 5.57105 5.58286 5.62382 5.64883 5.72716 5.90179 5.92724 5.98160 6.04440 6.14909 6.23512 6.26730 6.32802 6.40367 6.42138 6.45704 6.55139 6.71269 7.09141 7.31367 7.59289 7.84813 8.00971 8.31820 8.66903 9.08201 10.49789 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.007025 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.195545 B = 3984.545340 C = 5419.504902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.060 4.060 3 C -0.151 4.151 4 C -0.131 4.131 5 C 0.458 3.542 6 O -0.519 6.519 7 O -0.352 6.352 8 C 0.264 3.736 9 H 0.082 0.918 10 C -0.579 4.579 11 H 0.068 0.932 12 C 0.034 3.966 13 N -0.869 5.869 14 Si 1.077 2.923 15 H -0.276 1.276 16 H -0.281 1.281 17 H -0.280 1.280 18 C 0.031 3.969 19 C -0.229 4.229 20 C -0.210 4.210 21 C -0.074 4.074 22 O -0.170 6.170 23 C 0.057 3.943 24 O -0.373 6.373 25 C 0.060 3.940 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.275 0.725 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.193 0.807 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.554 7.798 -0.581 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.208 4.208 4 C -0.132 4.132 5 C 0.300 3.700 6 O -0.409 6.409 7 O -0.269 6.269 8 C 0.213 3.787 9 H 0.099 0.901 10 C -0.614 4.614 11 H 0.086 0.914 12 C -0.175 4.175 13 N -0.502 5.502 14 Si 0.902 3.098 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.206 1.206 18 C -0.020 4.020 19 C -0.249 4.249 20 C -0.229 4.229 21 C -0.142 4.142 22 O -0.066 6.066 23 C -0.020 4.020 24 O -0.292 6.292 25 C -0.016 4.016 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.210 0.790 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.422 6.187 -0.435 8.928 hybrid contribution 0.210 1.970 -0.417 2.025 sum -6.213 8.157 -0.852 10.289 Atomic orbital electron populations 1.21870 0.93934 1.02471 1.01553 1.20692 0.95758 0.96293 0.95105 1.21880 1.02666 0.94959 1.01317 1.23877 0.90631 0.99538 0.99182 1.23281 0.90601 0.73139 0.82930 1.90542 1.66757 1.45474 1.38138 1.87123 1.28019 1.77396 1.34324 1.19440 0.74756 0.84899 0.99636 0.90075 1.21952 1.45883 0.93656 0.99939 0.91355 1.26306 0.94000 0.98118 0.99108 1.70806 1.34762 1.39309 1.05348 0.83424 0.76629 0.75418 0.74288 1.20127 1.20669 1.20587 1.23479 0.94914 0.92834 0.90755 1.21385 1.00969 0.95846 1.06667 1.21680 1.01082 0.98696 1.01438 1.23826 0.94916 0.90644 1.04778 1.84069 1.47551 1.23998 1.50957 1.23999 0.89662 0.92458 0.95839 1.89635 1.32471 1.35196 1.71877 1.23936 0.89421 0.92787 0.95498 0.92167 0.92789 0.92052 0.89858 0.91361 0.92389 0.93013 0.91403 0.84113 0.84221 0.79021 0.88349 0.88892 0.88546 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.91 37.16 0.29 -1.40 16 2 C -0.06 -0.87 2.26 -90.62 -0.20 -1.08 16 3 C -0.15 -2.15 8.85 37.16 0.33 -1.82 16 4 C -0.13 -2.21 0.97 -154.58 -0.15 -2.36 16 5 C 0.46 9.87 6.64 36.01 0.24 10.11 16 6 O -0.52 -12.23 14.11 -18.75 -0.26 -12.49 16 7 O -0.35 -8.49 8.99 -41.89 -0.38 -8.86 16 8 C 0.26 6.76 1.96 -29.03 -0.06 6.70 16 9 H 0.08 2.24 5.96 -51.93 -0.31 1.94 16 10 C -0.58 -15.63 8.69 -34.44 -0.30 -15.93 16 11 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 12 C 0.03 0.92 5.46 -17.82 -0.10 0.82 16 13 N -0.87 -24.45 13.59 55.43 0.75 -23.70 16 14 Si 1.08 23.29 29.90 -169.99 -5.08 18.21 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 18 C 0.03 0.74 6.17 -35.62 -0.22 0.52 16 19 C -0.23 -4.91 10.81 -39.70 -0.43 -5.34 16 20 C -0.21 -3.75 10.91 -39.70 -0.43 -4.18 16 21 C -0.07 -1.30 12.09 29.42 0.36 -0.94 16 22 O -0.17 -3.72 10.64 2.69 0.03 -3.69 16 23 C 0.06 0.89 7.52 37.61 0.28 1.18 16 24 O -0.37 -5.95 10.86 -35.23 -0.38 -6.33 16 25 C 0.06 0.97 7.73 37.62 0.29 1.26 16 26 H 0.06 0.72 6.57 -51.93 -0.34 0.38 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.74 6.50 -51.93 -0.34 0.40 16 29 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 30 H 0.07 1.17 6.35 -51.93 -0.33 0.84 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.68 7.28 -51.93 -0.38 0.30 16 33 H 0.27 7.88 6.82 -40.82 -0.28 7.60 16 34 H 0.14 2.88 8.06 -52.49 -0.42 2.45 16 35 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 36 H 0.19 2.39 8.06 -52.48 -0.42 1.97 16 37 H 0.10 1.67 7.45 -51.93 -0.39 1.28 16 38 H 0.09 1.23 6.51 -51.93 -0.34 0.89 16 39 H 0.10 1.32 7.36 -51.93 -0.38 0.94 16 40 H 0.10 1.70 8.09 -51.93 -0.42 1.28 16 LS Contribution 332.63 15.07 5.01 5.01 Total: -1.00 -30.43 332.63 -5.65 -36.08 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.24 Total: 8.24 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.10 Total: -12.47 kcal Atomic # 7 Polarization: -24.45 SS G_CDS: 0.75 Total: -23.70 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.00 Total: -31.38 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -5.08 Total: 18.21 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.43 -5.65 -36.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345974475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.686 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds