Wall clock time and date at job start Tue Mar 31 2020 06:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46913 * 2 1 4 4 C 1.52998 * 109.47302 * 119.99194 * 2 1 3 5 5 C 1.50699 * 113.00150 * 180.50269 * 4 2 1 6 6 O 1.20823 * 120.00302 * 344.86324 * 5 4 2 7 7 O 1.34237 * 119.99865 * 164.86780 * 5 4 2 8 8 C 1.45200 * 116.99520 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.47425 * 329.99891 * 8 7 5 10 10 C 1.50700 * 109.46604 * 209.99689 * 8 7 5 11 11 H 1.08005 * 120.00022 * 264.82979 * 10 8 7 12 12 C 1.37872 * 120.00252 * 84.83236 * 10 8 7 13 13 N 1.31519 * 119.99753 * 358.26758 * 12 10 8 14 14 Si 1.86800 * 120.00409 * 178.26201 * 12 10 8 15 15 H 1.48495 * 109.47225 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47330 * 300.00554 * 14 12 10 17 17 H 1.48501 * 109.46742 * 60.00310 * 14 12 10 18 18 C 1.50703 * 109.47131 * 90.00216 * 8 7 5 19 19 C 1.34517 * 125.78700 * 215.94809 * 18 8 7 20 20 C 1.41381 * 106.83965 * 179.88343 * 19 18 8 21 21 C 1.34520 * 106.83943 * 0.37153 * 20 19 18 22 22 O 1.34300 * 125.78933 * 36.24591 * 18 8 7 23 23 C 1.54035 * 113.92749 * 312.43902 * 4 2 1 24 24 O 1.44179 * 85.51824 * 91.65803 * 23 4 2 25 25 C 1.44175 * 93.34412 * 24.19228 * 24 23 4 26 26 H 1.08999 * 109.47098 * 300.66243 * 1 2 3 27 27 H 1.08997 * 109.47073 * 60.66329 * 1 2 3 28 28 H 1.09003 * 109.47120 * 180.66034 * 1 2 3 29 29 H 1.08992 * 109.47296 * 239.99840 * 2 1 3 30 30 H 1.09001 * 109.47077 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.47280 * 299.99514 * 3 2 1 32 32 H 1.08995 * 109.48001 * 59.99776 * 3 2 1 33 33 H 0.97001 * 119.99912 * 354.78183 * 13 12 10 34 34 H 1.07994 * 126.58107 * 0.02562 * 19 18 8 35 35 H 1.07994 * 126.58059 * 180.16092 * 20 19 18 36 36 H 1.08003 * 125.78710 * 179.74385 * 21 20 19 37 37 H 1.08998 * 113.86279 * 205.79931 * 23 4 2 38 38 H 1.08997 * 113.86431 * 337.51130 * 23 4 2 39 39 H 1.08999 * 113.86936 * 221.66794 * 25 24 23 40 40 H 1.08996 * 113.98119 * 89.96521 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5441 -0.7569 1.3357 6 8 4.2115 -0.5005 0.3617 7 8 4.1424 -1.0737 2.4949 8 6 5.5943 -1.0890 2.5046 9 1 5.9614 -1.3581 1.5142 10 6 6.0791 -2.0997 3.5118 11 1 6.3352 -1.7845 4.5127 12 6 6.1958 -3.4265 3.1559 13 7 5.8517 -3.8159 1.9477 14 14 6.8428 -4.6712 4.3894 15 1 6.8717 -6.0181 3.7648 16 1 8.2165 -4.2889 4.8043 17 1 5.9551 -4.6958 5.5796 18 6 6.1086 0.2777 2.8768 19 6 7.2133 0.8642 2.3815 20 6 7.3164 2.1315 2.9998 21 6 6.2731 2.2402 3.8420 22 8 5.5450 1.1144 3.7632 23 6 1.3525 -0.2739 2.5532 24 8 0.4265 -1.3498 2.3008 25 6 1.3700 -2.0859 1.4967 26 1 -0.3633 0.5241 0.8840 27 1 -0.3633 0.5035 -0.8959 28 1 -0.3633 -1.0276 0.0118 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9565 0.8899 33 1 5.4454 -3.1857 1.3324 34 1 7.8901 0.4480 1.6501 35 1 8.0869 2.8691 2.8311 36 1 6.0579 3.0887 4.4746 37 1 1.9626 -0.4173 3.4450 38 1 0.9027 0.7174 2.4970 39 1 0.9342 -2.5317 0.6026 40 1 1.9864 -2.7833 2.0641 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345974475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:02 Heat of formation + Delta-G solvation = -111.021616 kcal Electronic energy + Delta-G solvation = -25123.453518 eV Core-core repulsion = 21484.620063 eV Total energy + Delta-G solvation = -3638.833454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.50377 -42.61892 -40.59027 -37.77968 -35.73228 -35.37673 -33.94578 -32.04971 -30.50536 -28.45057 -28.21019 -27.52341 -25.41501 -24.13143 -23.02389 -22.58890 -21.48719 -19.82126 -19.58055 -18.73348 -18.65910 -17.83413 -17.30888 -17.12243 -16.94715 -16.43845 -15.76127 -15.67379 -15.62655 -14.85852 -14.67972 -14.52718 -14.08354 -13.78132 -13.72301 -13.42799 -13.26435 -13.07981 -12.95658 -12.88799 -12.78909 -12.61988 -12.28817 -12.07143 -11.96212 -11.81254 -11.50094 -11.23935 -11.09071 -10.86319 -10.83196 -10.69395 -9.46548 -8.94116 -6.82581 0.77968 1.10936 1.47916 1.51417 1.67041 1.78765 1.88391 2.15014 2.41924 2.47765 2.98964 3.02365 3.37968 3.70667 3.86817 4.02968 4.09064 4.12867 4.22052 4.25510 4.27049 4.35245 4.38208 4.43477 4.71711 4.74300 4.78286 4.84267 4.88854 4.92959 4.96503 5.02535 5.10133 5.14505 5.28150 5.37443 5.43601 5.57574 5.72768 5.86168 6.14748 6.23725 6.85919 7.02733 8.35489 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.012608 B = 0.007025 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.195545 B = 3984.545340 C = 5419.504902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C -0.148 4.148 4 C -0.130 4.130 5 C 0.451 3.549 6 O -0.545 6.545 7 O -0.363 6.363 8 C 0.269 3.731 9 H 0.046 0.954 10 C -0.599 4.599 11 H 0.061 0.939 12 C -0.008 4.008 13 N -0.894 5.894 14 Si 1.123 2.877 15 H -0.274 1.274 16 H -0.264 1.264 17 H -0.264 1.264 18 C -0.015 4.015 19 C -0.235 4.235 20 C -0.214 4.214 21 C -0.055 4.055 22 O -0.189 6.189 23 C 0.063 3.937 24 O -0.367 6.367 25 C 0.062 3.938 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.257 0.743 34 H 0.137 0.863 35 H 0.180 0.820 36 H 0.248 0.752 37 H 0.080 0.920 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.742 9.666 0.350 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.076 4.076 3 C -0.205 4.205 4 C -0.131 4.131 5 C 0.296 3.704 6 O -0.436 6.436 7 O -0.279 6.279 8 C 0.218 3.782 9 H 0.064 0.936 10 C -0.634 4.634 11 H 0.080 0.920 12 C -0.211 4.211 13 N -0.528 5.528 14 Si 0.941 3.059 15 H -0.199 1.199 16 H -0.188 1.188 17 H -0.189 1.189 18 C -0.065 4.065 19 C -0.255 4.255 20 C -0.232 4.232 21 C -0.121 4.121 22 O -0.085 6.085 23 C -0.014 4.014 24 O -0.285 6.285 25 C -0.015 4.015 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.155 0.845 35 H 0.198 0.802 36 H 0.264 0.736 37 H 0.098 0.902 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.622 8.076 0.491 11.116 hybrid contribution 0.584 1.569 -0.738 1.830 sum -7.038 9.646 -0.246 11.943 Atomic orbital electron populations 1.21824 0.91106 1.03028 1.02997 1.20767 0.97810 0.95944 0.93089 1.21854 1.00205 0.95190 1.03247 1.24175 0.86569 1.00912 1.01491 1.24220 0.92657 0.71939 0.81601 1.90517 1.67900 1.46530 1.38671 1.87002 1.27151 1.78053 1.35735 1.18991 0.75133 0.86569 0.97534 0.93620 1.22145 1.46890 0.94519 0.99854 0.92049 1.27785 0.93331 1.00133 0.99824 1.70931 1.36850 1.38777 1.06202 0.82900 0.77232 0.73168 0.72639 1.19890 1.18841 1.18853 1.23112 0.96609 0.93237 0.93567 1.21700 0.99990 0.97522 1.06240 1.22081 1.02450 0.97762 1.00930 1.24969 0.93355 0.89956 1.03835 1.84028 1.48550 1.25205 1.50746 1.24034 0.89312 0.93865 0.94164 1.89639 1.31972 1.35139 1.71787 1.23937 0.89283 0.92131 0.96144 0.91547 0.90513 0.91940 0.90983 0.95103 0.89905 0.91638 0.93286 0.84459 0.80227 0.73566 0.90201 0.85660 0.85766 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 7.91 71.98 0.57 -2.20 16 2 C -0.06 -1.61 2.26 -10.80 -0.02 -1.63 16 3 C -0.15 -4.01 8.85 71.98 0.64 -3.38 16 4 C -0.13 -4.41 0.97 -52.23 -0.05 -4.46 16 5 C 0.45 20.46 6.64 71.24 0.47 20.93 16 6 O -0.54 -27.31 14.11 21.97 0.31 -27.00 16 7 O -0.36 -18.54 8.99 -48.98 -0.44 -18.98 16 8 C 0.27 14.69 1.96 29.10 0.06 14.75 16 9 H 0.05 2.77 5.96 -2.39 -0.01 2.76 16 10 C -0.60 -33.92 8.69 25.60 0.22 -33.70 16 11 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 12 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 13 N -0.89 -52.92 13.59 21.45 0.29 -52.63 16 14 Si 1.12 47.59 29.90 68.60 2.05 49.64 16 15 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 16 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 17 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 18 C -0.01 -0.72 6.17 24.83 0.15 -0.56 16 19 C -0.24 -10.24 10.81 22.19 0.24 -10.00 16 20 C -0.21 -7.16 10.91 22.19 0.24 -6.92 16 21 C -0.05 -1.76 12.09 66.97 0.81 -0.95 16 22 O -0.19 -8.22 10.64 0.42 0.00 -8.22 16 23 C 0.06 1.90 7.52 72.27 0.54 2.44 16 24 O -0.37 -11.15 10.86 -148.98 -1.62 -12.77 16 25 C 0.06 1.99 7.73 72.28 0.56 2.55 16 26 H 0.07 1.32 6.57 -2.39 -0.02 1.31 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 1.31 6.50 -2.39 -0.02 1.29 16 29 H 0.07 2.17 8.11 -2.39 -0.02 2.15 16 30 H 0.03 1.06 6.35 -2.39 -0.02 1.04 16 31 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.06 1.57 7.28 -2.39 -0.02 1.55 16 33 H 0.26 15.84 6.82 -92.71 -0.63 15.21 16 34 H 0.14 5.88 8.06 -2.91 -0.02 5.85 16 35 H 0.18 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.25 4.87 8.06 -2.91 -0.02 4.84 16 37 H 0.08 2.74 7.45 -2.39 -0.02 2.72 16 38 H 0.13 2.98 6.51 -2.39 -0.02 2.96 16 39 H 0.12 3.28 7.36 -2.39 -0.02 3.26 16 40 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 Total: -1.00 -71.29 332.63 6.68 -64.61 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 1.19 Total: 28.42 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 4.89 Total: -23.09 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.29 Total: -52.63 kcal Atomic # 8 Polarization: -65.22 SS G_CDS: -1.74 Total: -66.96 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.05 Total: 49.64 kcal Total: -71.29 6.68 -64.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345974475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.410 kcal (2) G-P(sol) polarization free energy of solvation -71.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds