Wall clock time and date at job start Tue Mar 31 2020 07:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00142 * 2 1 4 4 O 1.42899 * 109.47087 * 135.00399 * 3 2 1 5 5 C 1.42899 * 114.00262 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47127 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.46952 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47298 * 180.02562 * 7 6 5 9 9 O 1.20833 * 119.99655 * 359.97438 * 8 7 6 10 10 O 1.34222 * 120.00432 * 180.27351 * 8 7 6 11 11 C 1.45201 * 117.00137 * 179.71953 * 10 8 7 12 12 H 1.08993 * 109.47491 * 330.00073 * 11 10 8 13 13 C 1.50706 * 109.46887 * 90.00045 * 11 10 8 14 14 H 1.08001 * 119.99914 * 239.99856 * 13 11 10 15 15 C 1.37878 * 119.99966 * 60.00384 * 13 11 10 16 16 N 1.31520 * 119.99989 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00079 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47014 * 89.99290 * 17 15 13 19 19 H 1.48495 * 109.47169 * 209.99697 * 17 15 13 20 20 H 1.48498 * 109.46855 * 329.99737 * 17 15 13 21 21 C 1.50704 * 109.46907 * 209.99697 * 11 10 8 22 22 C 1.34516 * 125.78433 * 145.00355 * 21 11 10 23 23 C 1.41385 * 106.84086 * 179.97438 * 22 21 11 24 24 C 1.34521 * 106.83744 * 0.02562 * 23 22 21 25 25 O 1.34299 * 125.79250 * 324.69650 * 21 11 10 26 26 H 1.07990 * 120.00448 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.99673 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99859 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47011 * 15.01044 * 3 2 1 30 30 H 1.09000 * 109.47621 * 255.00798 * 3 2 1 31 31 H 1.09000 * 109.47391 * 60.00045 * 5 4 3 32 32 H 1.08998 * 109.47282 * 300.00210 * 5 4 3 33 33 H 1.08994 * 109.47101 * 59.99986 * 6 5 4 34 34 H 1.09006 * 109.46726 * 299.99777 * 6 5 4 35 35 H 1.09000 * 109.47764 * 59.99520 * 7 6 5 36 36 H 1.09006 * 109.46938 * 299.99298 * 7 6 5 37 37 H 0.97003 * 119.99499 * 180.02562 * 16 15 13 38 38 H 1.07996 * 126.58313 * 0.03006 * 22 21 11 39 39 H 1.07992 * 126.58013 * 179.97438 * 23 22 21 40 40 H 1.07996 * 125.78786 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9079 2.4351 1.0328 6 6 5.0109 2.2537 2.0776 7 6 5.8467 3.5323 2.1639 8 6 6.9335 3.3535 3.1925 9 8 7.0293 2.3105 3.7950 10 8 7.7913 4.3548 3.4436 11 6 8.8086 4.1143 4.4513 12 1 8.4262 3.4140 5.1938 13 6 10.0357 3.5328 3.7975 14 1 10.3965 2.5595 4.0955 15 6 10.6977 4.2435 2.8188 16 7 10.2581 5.4286 2.4556 17 14 12.2190 3.5231 2.0089 18 1 11.8183 2.7341 0.8163 19 1 13.1261 4.6228 1.5930 20 1 12.9219 2.6396 2.9735 21 6 9.1664 5.4144 5.1243 22 6 9.4959 5.5649 6.4197 23 6 9.7538 6.9406 6.6196 24 6 9.5660 7.5485 5.4343 25 8 9.2159 6.6183 4.5311 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3856 2.1161 0.2662 30 1 2.4755 1.4869 -0.9927 31 1 3.2680 3.2693 1.3206 32 1 4.3581 2.6408 0.0617 33 1 5.6507 1.4197 1.7894 34 1 4.5609 2.0479 3.0489 35 1 5.2067 4.3661 2.4523 36 1 6.2967 3.7385 1.1927 37 1 10.7237 5.9284 1.7668 38 1 9.5533 4.7846 7.1641 39 1 10.0449 7.4129 7.5461 40 1 9.6822 8.6046 5.2408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350310890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:04 Heat of formation + Delta-G solvation = -101.254358 kcal Electronic energy + Delta-G solvation = -22967.722689 eV Core-core repulsion = 19329.312775 eV Total energy + Delta-G solvation = -3638.409914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31010 -39.26875 -38.24039 -35.63616 -34.43295 -33.02244 -32.84949 -31.83080 -29.88209 -27.63436 -26.47700 -25.53676 -23.27999 -21.92299 -20.66337 -20.15490 -19.60591 -19.39269 -17.16150 -16.82084 -16.58667 -16.46243 -16.09059 -15.59286 -15.01525 -14.88910 -14.77732 -14.44039 -14.06608 -13.50171 -13.17393 -12.86230 -12.54355 -12.16667 -12.01995 -11.83365 -11.72881 -11.49823 -11.35449 -11.22658 -11.03922 -11.01982 -10.93988 -10.74888 -10.36247 -9.99158 -9.82451 -9.51269 -9.47640 -9.06195 -8.82885 -8.75387 -7.33966 -6.22479 -4.44247 1.88699 2.91095 3.19764 3.26522 3.27412 3.32120 3.45827 3.64283 4.06440 4.25276 4.26990 4.72107 4.85905 5.03576 5.07138 5.13044 5.19389 5.25226 5.31301 5.51722 5.57900 5.59103 5.70758 5.84864 5.93505 6.00487 6.27336 6.28341 6.34532 6.39563 6.45000 6.49031 6.81149 6.90549 7.11550 7.21035 7.48959 7.62641 7.79901 7.82992 8.41424 8.59420 8.99799 9.29659 10.76582 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.003196 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.252887 B = 8758.810260 C = 9690.464168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C 0.087 3.913 4 O -0.384 6.384 5 C 0.063 3.937 6 C -0.105 4.105 7 C -0.113 4.113 8 C 0.459 3.541 9 O -0.530 6.530 10 O -0.336 6.336 11 C 0.279 3.721 12 H 0.071 0.929 13 C -0.548 4.548 14 H 0.074 0.926 15 C 0.080 3.920 16 N -0.827 5.827 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.270 1.270 21 C 0.082 3.918 22 C -0.265 4.265 23 C -0.221 4.221 24 C -0.083 4.083 25 O -0.117 6.117 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.267 0.733 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.876 -1.037 -3.825 13.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.166 4.166 3 C 0.011 3.989 4 O -0.303 6.303 5 C -0.013 4.013 6 C -0.143 4.143 7 C -0.151 4.151 8 C 0.303 3.697 9 O -0.422 6.422 10 O -0.251 6.251 11 C 0.226 3.774 12 H 0.089 0.911 13 C -0.584 4.584 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.460 5.460 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.208 1.208 20 H -0.194 1.194 21 C 0.028 3.972 22 C -0.284 4.284 23 C -0.241 4.241 24 C -0.152 4.152 25 O -0.008 6.008 26 H 0.121 0.879 27 H 0.115 0.885 28 H 0.135 0.865 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -12.802 -1.228 -3.939 13.451 hybrid contribution 1.135 0.012 -0.359 1.190 sum -11.668 -1.216 -4.297 12.493 Atomic orbital electron populations 1.23824 0.95568 1.02194 1.00587 1.22792 0.95651 0.98400 0.99777 1.21527 0.89084 0.95687 0.92651 1.87919 1.44524 1.37552 1.60319 1.22537 0.92783 0.86840 0.99144 1.21260 0.95747 0.97783 0.99515 1.21169 0.95333 0.99263 0.99299 1.23063 0.81647 0.82730 0.82302 1.90558 1.72838 1.28698 1.50083 1.86716 1.39920 1.41593 1.56848 1.18786 0.86131 0.85976 0.86470 0.91117 1.21255 1.10379 1.04569 1.22182 0.90792 1.25169 0.97331 0.94463 0.96124 1.70059 1.38225 1.10396 1.27336 0.86491 0.82239 0.79000 0.79849 1.20154 1.20828 1.19406 1.22835 0.98900 0.85329 0.90116 1.21172 1.14499 0.96593 0.96182 1.21497 1.09662 0.94361 0.98537 1.23789 1.07983 0.94784 0.88614 1.84414 1.65155 1.14987 1.36276 0.87861 0.88470 0.86532 0.92855 0.92349 0.93139 0.93025 0.90132 0.90353 0.88553 0.88163 0.92313 0.84929 0.85161 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 14.31 29.01 0.42 -0.98 16 2 C -0.15 -1.36 9.89 -36.03 -0.36 -1.72 16 3 C 0.09 0.86 6.35 36.00 0.23 1.09 16 4 O -0.38 -4.99 10.33 -35.23 -0.36 -5.36 16 5 C 0.06 0.75 5.94 37.16 0.22 0.97 16 6 C -0.11 -1.54 4.87 -26.73 -0.13 -1.67 16 7 C -0.11 -1.78 5.81 -27.89 -0.16 -1.94 16 8 C 0.46 10.03 7.92 36.00 0.29 10.32 16 9 O -0.53 -12.72 15.20 -18.76 -0.29 -13.00 16 10 O -0.34 -8.39 9.25 -41.99 -0.39 -8.78 16 11 C 0.28 7.23 2.58 -29.03 -0.07 7.15 16 12 H 0.07 1.81 7.15 -51.93 -0.37 1.43 16 13 C -0.55 -15.09 8.91 -34.44 -0.31 -15.40 16 14 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 15 C 0.08 2.15 5.24 -17.82 -0.09 2.05 16 16 N -0.83 -22.66 10.62 55.43 0.59 -22.07 16 17 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 C 0.08 2.04 5.59 -35.62 -0.20 1.84 16 22 C -0.27 -5.91 10.81 -39.70 -0.43 -6.34 16 23 C -0.22 -4.39 10.91 -39.70 -0.43 -4.82 16 24 C -0.08 -1.68 12.09 29.42 0.36 -1.32 16 25 O -0.12 -2.89 8.87 2.21 0.02 -2.87 16 26 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 27 H 0.10 0.64 7.90 -52.48 -0.41 0.22 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.05 0.46 7.86 -51.93 -0.41 0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 38 H 0.13 2.69 8.06 -52.49 -0.42 2.27 16 39 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 40 H 0.18 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 352.59 15.07 5.31 5.31 Total: -1.00 -31.77 352.59 -6.62 -38.40 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.81 Total: 3.34 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.68 Total: -10.76 kcal Atomic # 7 Polarization: -22.66 SS G_CDS: 0.59 Total: -22.07 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.02 Total: -30.01 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.77 -6.62 -38.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350310890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.857 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds