Wall clock time and date at job start Tue Mar 31 2020 07:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00142 * 2 1 4 4 O 1.42899 * 109.47087 * 135.00399 * 3 2 1 5 5 C 1.42899 * 114.00262 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47127 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.46952 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47298 * 180.02562 * 7 6 5 9 9 O 1.20833 * 119.99655 * 359.97438 * 8 7 6 10 10 O 1.34222 * 120.00432 * 180.27351 * 8 7 6 11 11 C 1.45201 * 117.00137 * 179.71953 * 10 8 7 12 12 H 1.08993 * 109.47491 * 330.00073 * 11 10 8 13 13 C 1.50706 * 109.46887 * 90.00045 * 11 10 8 14 14 H 1.08001 * 119.99914 * 239.99856 * 13 11 10 15 15 C 1.37878 * 119.99966 * 60.00384 * 13 11 10 16 16 N 1.31520 * 119.99989 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00079 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47014 * 89.99290 * 17 15 13 19 19 H 1.48495 * 109.47169 * 209.99697 * 17 15 13 20 20 H 1.48498 * 109.46855 * 329.99737 * 17 15 13 21 21 C 1.50704 * 109.46907 * 209.99697 * 11 10 8 22 22 C 1.34516 * 125.78433 * 145.00355 * 21 11 10 23 23 C 1.41385 * 106.84086 * 179.97438 * 22 21 11 24 24 C 1.34521 * 106.83744 * 0.02562 * 23 22 21 25 25 O 1.34299 * 125.79250 * 324.69650 * 21 11 10 26 26 H 1.07990 * 120.00448 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.99673 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99859 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.47011 * 15.01044 * 3 2 1 30 30 H 1.09000 * 109.47621 * 255.00798 * 3 2 1 31 31 H 1.09000 * 109.47391 * 60.00045 * 5 4 3 32 32 H 1.08998 * 109.47282 * 300.00210 * 5 4 3 33 33 H 1.08994 * 109.47101 * 59.99986 * 6 5 4 34 34 H 1.09006 * 109.46726 * 299.99777 * 6 5 4 35 35 H 1.09000 * 109.47764 * 59.99520 * 7 6 5 36 36 H 1.09006 * 109.46938 * 299.99298 * 7 6 5 37 37 H 0.97003 * 119.99499 * 180.02562 * 16 15 13 38 38 H 1.07996 * 126.58313 * 0.03006 * 22 21 11 39 39 H 1.07992 * 126.58013 * 179.97438 * 23 22 21 40 40 H 1.07996 * 125.78786 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9079 2.4351 1.0328 6 6 5.0109 2.2537 2.0776 7 6 5.8467 3.5323 2.1639 8 6 6.9335 3.3535 3.1925 9 8 7.0293 2.3105 3.7950 10 8 7.7913 4.3548 3.4436 11 6 8.8086 4.1143 4.4513 12 1 8.4262 3.4140 5.1938 13 6 10.0357 3.5328 3.7975 14 1 10.3965 2.5595 4.0955 15 6 10.6977 4.2435 2.8188 16 7 10.2581 5.4286 2.4556 17 14 12.2190 3.5231 2.0089 18 1 11.8183 2.7341 0.8163 19 1 13.1261 4.6228 1.5930 20 1 12.9219 2.6396 2.9735 21 6 9.1664 5.4144 5.1243 22 6 9.4959 5.5649 6.4197 23 6 9.7538 6.9406 6.6196 24 6 9.5660 7.5485 5.4343 25 8 9.2159 6.6183 4.5311 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3856 2.1161 0.2662 30 1 2.4755 1.4869 -0.9927 31 1 3.2680 3.2693 1.3206 32 1 4.3581 2.6408 0.0617 33 1 5.6507 1.4197 1.7894 34 1 4.5609 2.0479 3.0489 35 1 5.2067 4.3661 2.4523 36 1 6.2967 3.7385 1.1927 37 1 10.7237 5.9284 1.7668 38 1 9.5533 4.7846 7.1641 39 1 10.0449 7.4129 7.5461 40 1 9.6822 8.6046 5.2408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350310890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:02 Heat of formation + Delta-G solvation = -119.133942 kcal Electronic energy + Delta-G solvation = -22968.498006 eV Core-core repulsion = 19329.312775 eV Total energy + Delta-G solvation = -3639.185231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -43.03619 -41.03644 -39.16395 -37.43579 -35.36622 -34.92942 -34.01581 -33.55780 -31.69097 -28.84607 -28.21798 -26.46954 -25.06746 -23.20017 -22.30306 -21.31904 -21.15860 -20.72695 -19.01684 -18.27548 -18.16507 -17.60819 -17.35147 -17.04789 -16.73955 -16.34779 -16.24455 -16.00818 -15.22493 -14.95613 -14.49030 -14.31389 -13.71462 -13.57686 -13.45816 -13.37366 -13.20374 -13.05268 -12.95490 -12.87391 -12.79088 -12.22464 -12.15194 -11.95417 -11.83981 -11.80501 -11.30264 -10.98040 -10.79363 -10.78545 -10.49094 -10.22528 -9.07722 -8.22729 -6.53272 1.18404 1.24834 1.36800 1.38642 1.47542 1.54980 1.90992 2.18025 2.33142 2.59602 2.89052 3.09821 3.81169 3.96788 3.98264 4.19588 4.20858 4.31084 4.37636 4.40934 4.45890 4.48433 4.51826 4.54443 4.60524 4.65601 4.75933 4.99412 5.09603 5.14032 5.22774 5.24825 5.44000 5.56938 5.66779 5.73434 5.79736 5.90038 6.02038 6.28638 6.51163 6.71925 7.13921 7.26841 8.74991 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.018281 B = 0.003196 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.252887 B = 8758.810260 C = 9690.464168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.176 4.176 3 C 0.083 3.917 4 O -0.411 6.411 5 C 0.069 3.931 6 C -0.099 4.099 7 C -0.099 4.099 8 C 0.446 3.554 9 O -0.560 6.560 10 O -0.350 6.350 11 C 0.278 3.722 12 H 0.056 0.944 13 C -0.578 4.578 14 H 0.058 0.942 15 C 0.042 3.958 16 N -0.845 5.845 17 Si 0.956 3.044 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.271 1.271 21 C 0.042 3.958 22 C -0.267 4.267 23 C -0.219 4.219 24 C -0.081 4.081 25 O -0.144 6.144 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.269 0.731 38 H 0.144 0.856 39 H 0.170 0.830 40 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.558 0.473 -4.469 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.007 3.993 4 O -0.332 6.332 5 C -0.007 4.007 6 C -0.136 4.136 7 C -0.137 4.137 8 C 0.292 3.708 9 O -0.453 6.453 10 O -0.265 6.265 11 C 0.225 3.775 12 H 0.074 0.926 13 C -0.614 4.614 14 H 0.076 0.924 15 C -0.166 4.166 16 N -0.477 5.477 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.197 1.197 20 H -0.196 1.196 21 C -0.011 4.011 22 C -0.286 4.286 23 C -0.238 4.238 24 C -0.149 4.149 25 O -0.037 6.037 26 H 0.134 0.866 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.079 0.921 38 H 0.162 0.838 39 H 0.188 0.812 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -13.502 0.281 -4.585 14.262 hybrid contribution 1.244 -0.448 -0.080 1.325 sum -12.258 -0.167 -4.666 13.117 Atomic orbital electron populations 1.24055 0.95015 1.03452 0.98000 1.22828 0.96371 0.98037 1.02213 1.21713 0.88607 0.96506 0.92473 1.87876 1.45567 1.38211 1.61514 1.22467 0.92275 0.87250 0.98752 1.21157 0.96161 0.96320 1.00010 1.21249 0.93750 1.00960 0.97725 1.24295 0.82009 0.81685 0.82804 1.90531 1.73670 1.29665 1.51468 1.86690 1.40378 1.42666 1.56789 1.18600 0.85832 0.86895 0.86187 0.92624 1.21378 1.11812 1.04486 1.23694 0.92381 1.25791 0.99739 0.94807 0.96296 1.70156 1.39073 1.10989 1.27506 0.85594 0.79076 0.78487 0.78810 1.19664 1.19718 1.19592 1.22723 1.01797 0.85460 0.91119 1.21560 1.13055 0.98474 0.95538 1.21904 1.08889 0.92965 1.00065 1.24733 1.06050 0.95979 0.88166 1.84348 1.66033 1.15474 1.37889 0.86576 0.87210 0.87329 0.91409 0.91394 0.90882 0.91490 0.92391 0.91634 0.85450 0.86647 0.92148 0.83849 0.81249 0.75771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 14.31 67.78 0.97 -1.25 16 2 C -0.18 -3.08 9.89 25.64 0.25 -2.82 16 3 C 0.08 1.51 6.35 71.24 0.45 1.96 16 4 O -0.41 -10.37 10.33 -148.98 -1.54 -11.90 16 5 C 0.07 1.51 5.94 71.98 0.43 1.94 16 6 C -0.10 -2.86 4.87 30.59 0.15 -2.71 16 7 C -0.10 -3.07 5.81 29.85 0.17 -2.90 16 8 C 0.45 20.07 7.92 71.23 0.56 20.64 16 9 O -0.56 -28.17 15.20 21.94 0.33 -27.84 16 10 O -0.35 -18.02 9.25 -48.71 -0.45 -18.48 16 11 C 0.28 15.00 2.58 29.10 0.07 15.08 16 12 H 0.06 3.04 7.15 -2.39 -0.02 3.02 16 13 C -0.58 -32.99 8.91 25.60 0.23 -32.76 16 14 H 0.06 3.36 7.81 -2.91 -0.02 3.34 16 15 C 0.04 2.31 5.24 84.65 0.44 2.75 16 16 N -0.84 -46.56 10.62 21.45 0.23 -46.33 16 17 Si 0.96 43.06 29.54 68.60 2.03 45.08 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 C 0.04 2.12 5.59 24.83 0.14 2.26 16 22 C -0.27 -11.83 10.81 22.19 0.24 -11.59 16 23 C -0.22 -8.18 10.91 22.19 0.24 -7.94 16 24 C -0.08 -3.12 12.09 66.97 0.81 -2.31 16 25 O -0.14 -7.12 8.87 0.89 0.01 -7.12 16 26 H 0.12 1.20 8.06 -2.92 -0.02 1.18 16 27 H 0.11 1.16 7.90 -2.91 -0.02 1.14 16 28 H 0.11 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.07 1.02 7.86 -2.38 -0.02 1.00 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 34 H 0.06 2.04 8.10 -2.38 -0.02 2.02 16 35 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.12 3.27 8.14 -2.38 -0.02 3.25 16 37 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 38 H 0.14 5.83 8.06 -2.91 -0.02 5.80 16 39 H 0.17 4.86 8.06 -2.91 -0.02 4.84 16 40 H 0.23 6.30 8.06 -2.91 -0.02 6.28 16 Total: -1.00 -71.02 352.59 6.79 -64.23 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 1.02 Total: 22.01 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 5.17 Total: -19.66 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.23 Total: -46.33 kcal Atomic # 8 Polarization: -63.69 SS G_CDS: -1.65 Total: -65.33 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.02 6.79 -64.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350310890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.905 kcal (2) G-P(sol) polarization free energy of solvation -71.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds