Wall clock time and date at job start Tue Mar 31 2020 06:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47095 * 2 1 4 4 H 1.08998 * 110.67552 * 303.48591 * 3 2 1 5 5 C 1.55001 * 110.61672 * 180.52508 * 3 2 1 6 6 C 1.54813 * 102.09227 * 204.47137 * 5 3 2 7 7 C 1.54110 * 104.18515 * 20.88018 * 6 5 3 8 8 H 1.08997 * 110.00380 * 242.53178 * 7 6 5 9 9 C 1.50698 * 109.87672 * 121.45242 * 7 6 5 10 10 O 1.20826 * 120.00216 * 245.71186 * 9 7 6 11 11 O 1.34235 * 120.00151 * 65.71556 * 9 7 6 12 12 C 1.45203 * 117.00099 * 180.02562 * 11 9 7 13 13 H 1.08997 * 109.46824 * 29.99540 * 12 11 9 14 14 C 1.50700 * 109.47106 * 149.99889 * 12 11 9 15 15 H 1.07995 * 119.99759 * 95.11638 * 14 12 11 16 16 C 1.37873 * 119.99805 * 275.11751 * 14 12 11 17 17 N 1.31520 * 119.99733 * 185.55778 * 16 14 12 18 18 Si 1.86798 * 120.00423 * 5.56229 * 16 14 12 19 19 H 1.48497 * 109.47265 * 84.92254 * 18 16 14 20 20 H 1.48498 * 109.47202 * 204.92322 * 18 16 14 21 21 H 1.48504 * 109.46755 * 324.92460 * 18 16 14 22 22 C 1.50704 * 109.46646 * 269.99816 * 12 11 9 23 23 C 1.34510 * 125.78570 * 144.97158 * 22 12 11 24 24 C 1.41380 * 106.84241 * 179.88574 * 23 22 12 25 25 C 1.34515 * 106.83812 * 0.37445 * 24 23 22 26 26 O 1.34302 * 125.78958 * 325.28009 * 22 12 11 27 27 O 1.43740 * 107.29391 * 2.03155 * 7 6 5 28 28 H 1.09001 * 109.46940 * 300.00133 * 1 2 3 29 29 H 1.08999 * 109.47138 * 60.00116 * 1 2 3 30 30 H 1.09003 * 109.47167 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46940 * 239.99866 * 2 1 3 32 32 H 1.08999 * 109.47138 * 119.99884 * 2 1 3 33 33 H 1.08994 * 110.90536 * 322.66967 * 5 3 2 34 34 H 1.08999 * 110.90562 * 86.27776 * 5 3 2 35 35 H 1.08998 * 110.48901 * 262.20738 * 6 5 3 36 36 H 1.08998 * 110.48702 * 139.55209 * 6 5 3 37 37 H 0.97005 * 119.99707 * 179.97438 * 17 16 14 38 38 H 1.08008 * 126.58327 * 0.02716 * 23 22 12 39 39 H 1.07997 * 126.58726 * 180.12188 * 24 23 22 40 40 H 1.08001 * 125.79215 * 179.78833 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6378 1.9928 -0.8505 5 6 3.5896 1.4735 -0.0133 6 6 3.8917 2.8555 0.6154 7 6 2.6051 3.2091 1.3864 8 1 2.1572 4.1116 0.9705 9 6 2.9230 3.4201 2.8443 10 8 2.4815 2.6618 3.6749 11 8 3.6966 4.4507 3.2202 12 6 3.9617 4.5922 4.6408 13 1 3.9524 3.6093 5.1118 14 6 5.3120 5.2314 4.8387 15 1 5.3881 6.2991 4.9825 16 6 6.4501 4.4532 4.8360 17 7 7.6162 4.9928 5.1169 18 14 6.3360 2.6327 4.4335 19 1 6.3761 2.4480 2.9606 20 1 7.4792 1.9160 5.0536 21 1 5.0618 2.0870 4.9663 22 6 2.8991 5.4589 5.2661 23 6 2.3933 5.3134 6.5040 24 6 1.4318 6.3354 6.6763 25 6 1.4016 7.0393 5.5304 26 8 2.2924 6.5038 4.6798 27 8 1.7005 2.1018 1.2388 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0000 0.6699 0.5982 34 1 3.9710 1.4183 -1.0329 35 1 4.0856 3.5943 -0.1622 36 1 4.7389 2.7872 1.2979 37 1 8.4169 4.4452 5.1154 38 1 2.6703 4.5615 7.2283 39 1 0.8332 6.5142 7.5573 40 1 0.7687 7.8908 5.3287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350311741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:30 Heat of formation + Delta-G solvation = -122.419379 kcal Electronic energy + Delta-G solvation = -24399.895903 eV Core-core repulsion = 20760.568204 eV Total energy + Delta-G solvation = -3639.327698 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.83037 -40.18920 -38.72629 -35.66689 -33.69923 -33.16840 -32.28882 -32.12551 -30.59055 -28.76786 -27.08930 -24.57244 -22.88544 -21.89702 -21.13860 -21.03291 -20.38893 -19.47184 -17.59914 -17.23776 -16.74148 -16.54722 -16.06374 -15.69733 -15.13383 -14.79300 -14.46233 -14.02791 -13.82386 -13.66373 -13.28281 -13.11774 -12.88222 -12.31970 -12.29554 -12.10786 -11.94215 -11.76395 -11.64969 -11.49650 -11.35360 -11.04705 -11.00309 -10.77921 -10.67435 -10.15488 -9.99054 -9.74511 -9.73425 -9.44545 -9.23308 -8.97728 -7.73685 -6.53427 -4.62598 2.43007 2.86545 2.99274 3.12577 3.18393 3.23851 3.35786 3.75642 4.06779 4.07996 4.48538 4.64992 4.84475 4.88495 5.00632 5.15715 5.18227 5.23413 5.35240 5.50248 5.60078 5.64368 5.66140 5.73061 5.74694 5.83035 5.90846 5.98725 6.08086 6.11211 6.23601 6.24150 6.44244 6.56480 6.74298 6.88014 7.06897 7.14457 7.41259 7.89053 8.03108 8.56264 8.63750 9.02680 10.54884 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.006089 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.212425 B = 4597.335453 C = 6022.338671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.073 3.927 4 H 0.074 0.926 5 C -0.152 4.152 6 C -0.146 4.146 7 C 0.082 3.918 8 H 0.103 0.897 9 C 0.444 3.556 10 O -0.505 6.505 11 O -0.353 6.353 12 C 0.246 3.754 13 H 0.087 0.913 14 C -0.502 4.502 15 H 0.091 0.909 16 C 0.094 3.906 17 N -0.857 5.857 18 Si 0.862 3.138 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.251 1.251 22 C 0.031 3.969 23 C -0.225 4.225 24 C -0.210 4.210 25 C -0.071 4.071 26 O -0.169 6.169 27 O -0.345 6.345 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.276 0.724 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 -5.236 -9.667 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.015 3.985 4 H 0.091 0.909 5 C -0.189 4.189 6 C -0.184 4.184 7 C 0.022 3.978 8 H 0.120 0.880 9 C 0.285 3.715 10 O -0.394 6.394 11 O -0.270 6.270 12 C 0.195 3.805 13 H 0.104 0.896 14 C -0.538 4.538 15 H 0.109 0.891 16 C -0.115 4.115 17 N -0.491 5.491 18 Si 0.687 3.313 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.176 1.176 22 C -0.020 4.020 23 C -0.245 4.245 24 C -0.229 4.229 25 C -0.139 4.139 26 O -0.064 6.064 27 O -0.264 6.264 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -9.622 -5.414 -9.480 14.552 hybrid contribution 0.122 -0.704 0.080 0.719 sum -9.501 -6.118 -9.400 14.698 Atomic orbital electron populations 1.21722 0.95213 1.01457 1.02389 1.21551 0.96848 0.94223 1.02772 1.23279 0.93691 0.94103 0.87407 0.90858 1.23226 0.96048 0.97726 1.01933 1.22912 0.97539 0.97548 1.00391 1.22266 0.91629 0.92304 0.91552 0.87982 1.23462 0.76645 0.80279 0.91093 1.90593 1.49570 1.45450 1.53764 1.87143 1.60638 1.45427 1.33809 1.19896 0.90286 0.94399 0.75903 0.89575 1.20829 0.86800 0.97328 1.48807 0.89076 1.25069 0.94951 0.99178 0.92324 1.69862 0.98804 1.37311 1.43156 0.87052 0.79385 0.84650 0.80198 1.18934 1.20173 1.17551 1.23209 0.95961 0.89101 0.93752 1.21386 1.01677 1.03546 0.97862 1.21674 1.03056 0.98768 0.99445 1.23836 0.97537 1.02042 0.90441 1.84067 1.43079 1.37847 1.41416 1.88985 1.53713 1.43227 1.40467 0.91766 0.92941 0.92842 0.90666 0.90907 0.90253 0.89729 0.89063 0.89355 0.91384 0.83943 0.84159 0.78955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.83 37.16 0.37 -1.18 16 2 C -0.12 -1.25 5.71 -26.73 -0.15 -1.40 16 3 C 0.07 0.90 3.33 -25.68 -0.09 0.81 16 4 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.15 -1.84 6.59 -24.72 -0.16 -2.00 16 6 C -0.15 -2.15 6.63 -25.20 -0.17 -2.32 16 7 C 0.08 1.41 3.96 -27.30 -0.11 1.31 16 8 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 9 C 0.44 9.88 7.03 36.00 0.25 10.13 16 10 O -0.51 -12.60 15.75 -25.38 -0.40 -13.00 16 11 O -0.35 -8.50 9.45 -42.10 -0.40 -8.90 16 12 C 0.25 6.27 1.74 -29.03 -0.05 6.22 16 13 H 0.09 2.27 4.77 -51.93 -0.25 2.02 16 14 C -0.50 -13.98 9.23 -34.44 -0.32 -14.30 16 15 H 0.09 2.74 8.05 -52.49 -0.42 2.32 16 16 C 0.09 2.58 5.47 -17.82 -0.10 2.49 16 17 N -0.86 -24.33 13.96 55.43 0.77 -23.55 16 18 Si 0.86 20.70 27.34 -169.99 -4.65 16.05 16 19 H -0.26 -6.08 6.95 56.52 0.39 -5.68 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.25 -6.16 6.14 56.52 0.35 -5.81 16 22 C 0.03 0.74 6.17 -35.62 -0.22 0.52 16 23 C -0.23 -4.85 10.81 -39.70 -0.43 -5.28 16 24 C -0.21 -3.82 10.91 -39.70 -0.43 -4.25 16 25 C -0.07 -1.27 12.09 29.42 0.36 -0.91 16 26 O -0.17 -3.76 10.63 1.87 0.02 -3.74 16 27 O -0.34 -5.88 10.11 -54.84 -0.55 -6.43 16 28 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.53 7.53 -51.93 -0.39 1.14 16 37 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.14 2.86 8.06 -52.48 -0.42 2.44 16 39 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 40 H 0.19 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -32.35 340.85 -7.06 -39.41 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.74 Total: 5.19 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -1.25 Total: -10.17 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.77 Total: -23.55 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -1.33 Total: -32.07 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.65 Total: 16.05 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.35 -7.06 -39.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.006 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds