Wall clock time and date at job start Tue Mar 31 2020 06:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47095 * 2 1 4 4 H 1.08998 * 110.67552 * 303.48591 * 3 2 1 5 5 C 1.55001 * 110.61672 * 180.52508 * 3 2 1 6 6 C 1.54813 * 102.09227 * 204.47137 * 5 3 2 7 7 C 1.54110 * 104.18515 * 20.88018 * 6 5 3 8 8 H 1.08997 * 110.00380 * 242.53178 * 7 6 5 9 9 C 1.50698 * 109.87672 * 121.45242 * 7 6 5 10 10 O 1.20826 * 120.00216 * 245.71186 * 9 7 6 11 11 O 1.34235 * 120.00151 * 65.71556 * 9 7 6 12 12 C 1.45203 * 117.00099 * 180.02562 * 11 9 7 13 13 H 1.08997 * 109.46824 * 29.99540 * 12 11 9 14 14 C 1.50700 * 109.47106 * 149.99889 * 12 11 9 15 15 H 1.07995 * 119.99759 * 95.11638 * 14 12 11 16 16 C 1.37873 * 119.99805 * 275.11751 * 14 12 11 17 17 N 1.31520 * 119.99733 * 185.55778 * 16 14 12 18 18 Si 1.86798 * 120.00423 * 5.56229 * 16 14 12 19 19 H 1.48497 * 109.47265 * 84.92254 * 18 16 14 20 20 H 1.48498 * 109.47202 * 204.92322 * 18 16 14 21 21 H 1.48504 * 109.46755 * 324.92460 * 18 16 14 22 22 C 1.50704 * 109.46646 * 269.99816 * 12 11 9 23 23 C 1.34510 * 125.78570 * 144.97158 * 22 12 11 24 24 C 1.41380 * 106.84241 * 179.88574 * 23 22 12 25 25 C 1.34515 * 106.83812 * 0.37445 * 24 23 22 26 26 O 1.34302 * 125.78958 * 325.28009 * 22 12 11 27 27 O 1.43740 * 107.29391 * 2.03155 * 7 6 5 28 28 H 1.09001 * 109.46940 * 300.00133 * 1 2 3 29 29 H 1.08999 * 109.47138 * 60.00116 * 1 2 3 30 30 H 1.09003 * 109.47167 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46940 * 239.99866 * 2 1 3 32 32 H 1.08999 * 109.47138 * 119.99884 * 2 1 3 33 33 H 1.08994 * 110.90536 * 322.66967 * 5 3 2 34 34 H 1.08999 * 110.90562 * 86.27776 * 5 3 2 35 35 H 1.08998 * 110.48901 * 262.20738 * 6 5 3 36 36 H 1.08998 * 110.48702 * 139.55209 * 6 5 3 37 37 H 0.97005 * 119.99707 * 179.97438 * 17 16 14 38 38 H 1.08008 * 126.58327 * 0.02716 * 23 22 12 39 39 H 1.07997 * 126.58726 * 180.12188 * 24 23 22 40 40 H 1.08001 * 125.79215 * 179.78833 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6378 1.9928 -0.8505 5 6 3.5896 1.4735 -0.0133 6 6 3.8917 2.8555 0.6154 7 6 2.6051 3.2091 1.3864 8 1 2.1572 4.1116 0.9705 9 6 2.9230 3.4201 2.8443 10 8 2.4815 2.6618 3.6749 11 8 3.6966 4.4507 3.2202 12 6 3.9617 4.5922 4.6408 13 1 3.9524 3.6093 5.1118 14 6 5.3120 5.2314 4.8387 15 1 5.3881 6.2991 4.9825 16 6 6.4501 4.4532 4.8360 17 7 7.6162 4.9928 5.1169 18 14 6.3360 2.6327 4.4335 19 1 6.3761 2.4480 2.9606 20 1 7.4792 1.9160 5.0536 21 1 5.0618 2.0870 4.9663 22 6 2.8991 5.4589 5.2661 23 6 2.3933 5.3134 6.5040 24 6 1.4318 6.3354 6.6763 25 6 1.4016 7.0393 5.5304 26 8 2.2924 6.5038 4.6798 27 8 1.7005 2.1018 1.2388 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.0000 0.6699 0.5982 34 1 3.9710 1.4183 -1.0329 35 1 4.0856 3.5943 -0.1622 36 1 4.7389 2.7872 1.2979 37 1 8.4169 4.4452 5.1154 38 1 2.6703 4.5615 7.2283 39 1 0.8332 6.5142 7.5573 40 1 0.7687 7.8908 5.3287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350311741.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:29 Heat of formation + Delta-G solvation = -141.994931 kcal Electronic energy + Delta-G solvation = -24400.744762 eV Core-core repulsion = 20760.568204 eV Total energy + Delta-G solvation = -3640.176558 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.45509 -41.71387 -40.18541 -37.54144 -35.24076 -34.64086 -33.94426 -33.31504 -32.33760 -29.94992 -28.88903 -25.84064 -24.65682 -23.04887 -22.69111 -22.04519 -21.90777 -21.16211 -19.62433 -18.87898 -18.30725 -18.02784 -17.57060 -17.13925 -16.77982 -16.41054 -16.19982 -15.34168 -15.18082 -14.79599 -14.65414 -14.52310 -14.16061 -14.02313 -13.88135 -13.71944 -13.46583 -13.27800 -12.99971 -12.87602 -12.76030 -12.46913 -12.14109 -12.01548 -11.85684 -11.78338 -11.66199 -11.59415 -11.43804 -11.09966 -10.83066 -10.74666 -9.36998 -8.65573 -6.80544 0.80533 1.12095 1.12946 1.19615 1.27814 1.52865 1.77132 2.05253 2.19015 2.72106 2.95374 3.38217 3.61219 3.74223 3.79184 3.97233 4.11283 4.13343 4.14806 4.21876 4.26159 4.35083 4.38413 4.52350 4.72319 4.81574 4.88301 4.88592 4.94768 4.97712 5.02531 5.06705 5.06851 5.17926 5.21557 5.41900 5.54404 5.66897 5.78907 5.94357 6.26233 6.32062 6.82637 6.88633 8.47744 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.006089 C = 0.004648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.212425 B = 4597.335453 C = 6022.338671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.065 3.935 4 H 0.102 0.898 5 C -0.145 4.145 6 C -0.148 4.148 7 C 0.086 3.914 8 H 0.129 0.871 9 C 0.436 3.564 10 O -0.540 6.540 11 O -0.359 6.359 12 C 0.256 3.744 13 H 0.070 0.930 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.911 3.089 19 H -0.248 1.248 20 H -0.257 1.257 21 H -0.266 1.266 22 C -0.020 4.020 23 C -0.230 4.230 24 C -0.215 4.215 25 C -0.055 4.055 26 O -0.190 6.190 27 O -0.373 6.373 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.056 0.944 37 H 0.284 0.716 38 H 0.146 0.854 39 H 0.181 0.819 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 -5.749 -11.822 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.009 3.991 4 H 0.120 0.880 5 C -0.183 4.183 6 C -0.185 4.185 7 C 0.027 3.973 8 H 0.146 0.854 9 C 0.280 3.720 10 O -0.430 6.430 11 O -0.276 6.276 12 C 0.204 3.796 13 H 0.087 0.913 14 C -0.555 4.555 15 H 0.072 0.928 16 C -0.148 4.148 17 N -0.530 5.530 18 Si 0.734 3.266 19 H -0.172 1.172 20 H -0.181 1.181 21 H -0.191 1.191 22 C -0.070 4.070 23 C -0.250 4.250 24 C -0.234 4.234 25 C -0.122 4.122 26 O -0.086 6.086 27 O -0.293 6.293 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.164 0.836 39 H 0.199 0.801 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -11.223 -5.929 -11.651 17.229 hybrid contribution 0.457 -0.475 0.770 1.014 sum -10.765 -6.405 -10.881 16.592 Atomic orbital electron populations 1.21709 0.95005 1.02160 1.01758 1.21619 0.97045 0.93354 1.03350 1.23669 0.94055 0.94948 0.86398 0.87979 1.23270 0.95876 0.95454 1.03666 1.23006 0.94837 1.00322 1.00356 1.22405 0.93453 0.93810 0.87608 0.85408 1.24553 0.75282 0.78796 0.93389 1.90562 1.50769 1.46343 1.55327 1.87017 1.61535 1.46432 1.32664 1.19417 0.90092 0.93832 0.76247 0.91255 1.20784 0.88682 0.95743 1.50245 0.92802 1.25661 0.94433 1.02778 0.91936 1.69929 0.99557 1.39002 1.44557 0.86291 0.79118 0.80185 0.81017 1.17192 1.18101 1.19127 1.22983 0.97993 0.91029 0.95037 1.21771 1.01907 1.04279 0.96993 1.22106 1.02595 0.97468 1.01187 1.24980 0.95705 1.02084 0.89411 1.84024 1.44140 1.37719 1.42756 1.88975 1.53779 1.43481 1.43079 0.94617 0.91272 0.91558 0.87372 0.92989 0.91551 0.85754 0.85722 0.92493 0.90633 0.83622 0.80121 0.73638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.83 71.98 0.71 -2.05 16 2 C -0.12 -2.21 5.71 30.59 0.17 -2.04 16 3 C 0.07 1.44 3.33 31.28 0.10 1.54 16 4 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 5 C -0.15 -3.08 6.59 31.90 0.21 -2.87 16 6 C -0.15 -4.06 6.63 31.59 0.21 -3.85 16 7 C 0.09 2.90 3.96 30.22 0.12 3.02 16 8 H 0.13 3.60 8.14 -2.39 -0.02 3.58 16 9 C 0.44 19.80 7.03 71.24 0.50 20.30 16 10 O -0.54 -27.84 15.75 28.30 0.45 -27.39 16 11 O -0.36 -17.88 9.45 -48.75 -0.46 -18.34 16 12 C 0.26 13.66 1.74 29.10 0.05 13.71 16 13 H 0.07 3.87 4.77 -2.39 -0.01 3.86 16 14 C -0.52 -30.50 9.23 25.60 0.24 -30.26 16 15 H 0.05 3.47 8.05 -2.91 -0.02 3.45 16 16 C 0.06 3.31 5.47 84.65 0.46 3.77 16 17 N -0.89 -52.51 13.96 21.45 0.30 -52.21 16 18 Si 0.91 43.86 27.34 68.60 1.88 45.74 16 19 H -0.25 -11.16 6.95 99.48 0.69 -10.47 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.27 -13.38 6.14 99.48 0.61 -12.77 16 22 C -0.02 -0.98 6.17 24.83 0.15 -0.83 16 23 C -0.23 -10.02 10.81 22.19 0.24 -9.78 16 24 C -0.21 -7.37 10.91 22.19 0.24 -7.12 16 25 C -0.06 -1.85 12.09 66.97 0.81 -1.04 16 26 O -0.19 -8.50 10.63 1.13 0.01 -8.49 16 27 O -0.37 -12.33 10.11 -130.23 -1.32 -13.65 16 28 H 0.03 0.85 7.92 -2.39 -0.02 0.83 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.58 8.06 -2.39 -0.02 1.56 16 34 H 0.12 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.06 1.93 7.53 -2.39 -0.02 1.91 16 37 H 0.28 15.18 8.31 -92.70 -0.77 14.41 16 38 H 0.15 6.03 8.06 -2.91 -0.02 6.01 16 39 H 0.18 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.25 5.17 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -76.10 340.85 6.00 -70.10 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.92 Total: 21.75 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 4.22 Total: -17.51 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: 0.30 Total: -52.21 kcal Atomic # 8 Polarization: -66.55 SS G_CDS: -1.32 Total: -67.87 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.88 Total: 45.74 kcal Total: -76.10 6.00 -70.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311741.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.891 kcal (2) G-P(sol) polarization free energy of solvation -76.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds