Wall clock time and date at job start Tue Mar 31 2020 06:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47032 * 2 1 4 4 H 1.08996 * 110.41786 * 304.14179 * 3 2 1 5 5 C 1.54479 * 110.37139 * 181.83208 * 3 2 1 6 6 C 1.54514 * 104.06221 * 217.19081 * 5 3 2 7 7 C 1.54482 * 104.06276 * 359.97438 * 6 5 3 8 8 H 1.08997 * 110.46393 * 265.10122 * 7 6 5 9 9 C 1.50699 * 110.37262 * 142.81064 * 7 6 5 10 10 O 1.20823 * 119.99963 * 248.16739 * 9 7 6 11 11 O 1.34231 * 119.99761 * 68.16249 * 9 7 6 12 12 C 1.45206 * 116.99738 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.47070 * 30.00177 * 12 11 9 14 14 C 1.50701 * 109.47004 * 270.00284 * 12 11 9 15 15 H 1.07993 * 120.00098 * 119.99989 * 14 12 11 16 16 C 1.37880 * 119.99861 * 299.99776 * 14 12 11 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 12 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47295 * 60.00554 * 18 16 14 20 20 H 1.48503 * 109.46954 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47431 * 300.00157 * 18 16 14 22 22 C 1.50699 * 109.47021 * 150.00237 * 12 11 9 23 23 C 1.34512 * 125.78803 * 219.99797 * 22 12 11 24 24 C 1.41382 * 106.84050 * 180.02562 * 23 22 12 25 25 C 1.34521 * 106.83972 * 0.02562 * 24 23 22 26 26 O 1.34301 * 108.41905 * 359.73391 * 25 24 23 27 27 O 1.44424 * 104.80140 * 23.98086 * 7 6 5 28 28 H 1.09002 * 109.47035 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47441 * 300.00157 * 1 2 3 30 30 H 1.09010 * 109.46956 * 60.00365 * 1 2 3 31 31 H 1.08998 * 109.47441 * 239.99843 * 2 1 3 32 32 H 1.09003 * 109.47054 * 120.00035 * 2 1 3 33 33 H 1.09009 * 110.50948 * 335.83134 * 5 3 2 34 34 H 1.08998 * 110.51187 * 98.40875 * 5 3 2 35 35 H 1.09002 * 110.50788 * 241.35120 * 6 5 3 36 36 H 1.09006 * 110.51020 * 118.64324 * 6 5 3 37 37 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 38 38 H 1.07996 * 126.58167 * 359.97211 * 23 22 12 39 39 H 1.08002 * 126.58210 * 180.02562 * 24 23 22 40 40 H 1.07994 * 125.78430 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6262 1.9921 -0.8454 5 6 3.5839 1.4670 -0.0463 6 6 3.9678 2.6571 0.8613 7 6 2.6104 3.2112 1.3480 8 1 2.2836 4.0328 0.7106 9 6 2.7136 3.6686 2.7802 10 8 2.1263 3.0695 3.6495 11 8 3.4582 4.7417 3.0900 12 6 3.5123 5.1247 4.4896 13 1 3.3979 4.2382 5.1135 14 6 2.3993 6.0959 4.7880 15 1 1.6523 5.8504 5.5282 16 6 2.3348 7.2981 4.1159 17 7 3.2443 7.5970 3.2142 18 14 0.9557 8.5023 4.4863 19 1 1.0117 8.8941 5.9176 20 1 1.1111 9.7097 3.6358 21 1 -0.3524 7.8604 4.1996 22 6 4.8394 5.7764 4.7811 23 6 5.5771 5.5965 5.8914 24 6 6.7355 6.3941 5.7472 25 6 6.6362 7.0141 4.5576 26 8 5.4883 6.6319 3.9744 27 8 1.6973 2.0974 1.2405 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9927 0.5373 0.3497 34 1 3.9328 1.6331 -1.0655 35 1 4.5066 3.4139 0.2911 36 1 4.5664 2.3158 1.7059 37 1 3.1987 8.4426 2.7412 38 1 5.3312 4.9648 6.7322 39 1 7.5449 6.4876 6.4562 40 1 7.3589 7.6996 4.1404 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350311742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:33 Heat of formation + Delta-G solvation = -117.330135 kcal Electronic energy + Delta-G solvation = -24292.683607 eV Core-core repulsion = 20653.576595 eV Total energy + Delta-G solvation = -3639.107012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31975 -39.94479 -38.49651 -35.36668 -33.57776 -32.96771 -31.98036 -31.84083 -29.95584 -28.57230 -26.51696 -24.56422 -23.03648 -21.75380 -20.94194 -20.71436 -19.88441 -19.43046 -17.20981 -16.58979 -16.46862 -16.37562 -15.66494 -15.35801 -14.91081 -14.44390 -14.25973 -13.95130 -13.64795 -13.57703 -13.20869 -13.05857 -12.53807 -12.11989 -11.81634 -11.74964 -11.65059 -11.51674 -11.41103 -11.30008 -11.03099 -10.96930 -10.90196 -10.70676 -10.59528 -10.39147 -9.83441 -9.76127 -9.29599 -9.04817 -8.83757 -8.74797 -7.36734 -6.23454 -4.44924 2.86781 3.14275 3.23668 3.25945 3.30370 3.37629 3.66616 4.24514 4.26988 4.30105 4.58520 4.77691 4.97054 5.07686 5.10777 5.20095 5.26314 5.34054 5.54745 5.68000 5.72004 5.80783 5.83815 5.89257 5.89442 5.96454 6.06003 6.13252 6.14956 6.32278 6.33790 6.46076 6.79570 6.85147 6.98457 7.19870 7.46648 7.61927 7.75569 7.81005 8.41111 8.58597 8.98274 9.28563 10.75647 Molecular weight = 294.13amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.004984 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.080137 B = 5617.151977 C = 6649.972776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.069 3.931 4 H 0.070 0.930 5 C -0.150 4.150 6 C -0.138 4.138 7 C 0.083 3.917 8 H 0.101 0.899 9 C 0.464 3.536 10 O -0.511 6.511 11 O -0.333 6.333 12 C 0.279 3.721 13 H 0.071 0.929 14 C -0.548 4.548 15 H 0.074 0.926 16 C 0.080 3.920 17 N -0.825 5.825 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.272 1.272 22 C 0.080 3.920 23 C -0.265 4.265 24 C -0.222 4.222 25 C -0.082 4.082 26 O -0.112 6.112 27 O -0.342 6.342 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.268 0.732 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 -8.357 -7.805 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C 0.012 3.988 4 H 0.088 0.912 5 C -0.187 4.187 6 C -0.176 4.176 7 C 0.024 3.976 8 H 0.119 0.881 9 C 0.306 3.694 10 O -0.400 6.400 11 O -0.248 6.248 12 C 0.227 3.773 13 H 0.089 0.911 14 C -0.584 4.584 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.458 5.458 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.197 1.197 22 C 0.027 3.973 23 C -0.284 4.284 24 C -0.241 4.241 25 C -0.151 4.151 26 O -0.003 6.003 27 O -0.261 6.261 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.713 -8.322 -7.789 11.717 hybrid contribution -0.408 0.996 0.435 1.161 sum 2.305 -7.325 -7.355 10.633 Atomic orbital electron populations 1.21736 0.95261 1.01367 1.02555 1.21565 0.96850 0.94289 1.02540 1.23105 0.93767 0.94229 0.87736 0.91181 1.23017 0.95978 0.99267 1.00482 1.22811 0.96543 0.97968 1.00261 1.22382 0.90566 0.91297 0.93324 0.88149 1.22616 0.77625 0.79019 0.90147 1.90565 1.43558 1.55950 1.49965 1.86717 1.62322 1.41099 1.34678 1.18786 0.87526 0.93551 0.77402 0.91090 1.21243 1.10946 1.01711 1.24514 0.90771 1.25161 0.95939 0.97794 0.94165 1.70030 1.31640 1.22850 1.21291 0.86552 0.82298 0.79986 0.78767 1.19708 1.20812 1.19689 1.22766 0.92776 0.91548 0.90255 1.21196 0.97007 1.09024 1.01222 1.21496 1.00456 1.03244 0.98932 1.23816 0.90694 1.04789 0.95852 1.84468 1.26542 1.47588 1.41721 1.89250 1.54995 1.42057 1.39785 0.92926 0.91624 0.92949 0.90843 0.90991 0.90439 0.90302 0.89152 0.90254 0.92188 0.84947 0.85165 0.80030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.83 37.16 0.37 -1.28 16 2 C -0.12 -1.24 5.57 -26.73 -0.15 -1.39 16 3 C 0.07 0.88 3.27 -25.95 -0.08 0.80 16 4 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 5 C -0.15 -1.70 6.63 -25.16 -0.17 -1.86 16 6 C -0.14 -1.99 6.62 -25.16 -0.17 -2.15 16 7 C 0.08 1.51 3.82 -27.11 -0.10 1.41 16 8 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 9 C 0.46 10.79 7.16 36.00 0.26 11.05 16 10 O -0.51 -13.22 15.77 -25.28 -0.40 -13.62 16 11 O -0.33 -8.40 9.26 -41.33 -0.38 -8.79 16 12 C 0.28 7.30 2.58 -29.03 -0.07 7.23 16 13 H 0.07 1.83 7.15 -51.93 -0.37 1.46 16 14 C -0.55 -15.24 8.90 -34.44 -0.31 -15.54 16 15 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 16 C 0.08 2.17 5.24 -17.82 -0.09 2.08 16 17 N -0.83 -22.57 10.46 55.43 0.58 -21.99 16 18 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 22 C 0.08 2.00 5.67 -35.63 -0.20 1.79 16 23 C -0.27 -5.87 10.80 -39.70 -0.43 -6.30 16 24 C -0.22 -4.37 10.91 -39.70 -0.43 -4.80 16 25 C -0.08 -1.66 12.09 29.42 0.36 -1.30 16 26 O -0.11 -2.76 8.64 4.38 0.04 -2.72 16 27 O -0.34 -6.10 10.26 -54.47 -0.56 -6.65 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.86 7.91 -51.93 -0.41 0.45 16 30 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.82 7.87 -51.92 -0.41 0.41 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.21 7.87 -51.93 -0.41 0.80 16 37 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 39 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 40 H 0.18 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 340.59 15.07 5.13 5.13 Total: -1.00 -31.98 340.59 -7.64 -39.61 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.79 Total: 3.39 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.23 Total: -10.28 kcal Atomic # 7 Polarization: -22.57 SS G_CDS: 0.58 Total: -21.99 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -1.30 Total: -31.78 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.98 -7.64 -39.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350311742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.717 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds